Wall clock time and date at job start Tue Mar 31 2020 23:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33820 * 126.08237 * 2 1 4 4 H 0.97000 * 124.98061 * 0.02562 * 3 2 1 5 5 N 1.39912 * 110.02841 * 180.02562 * 3 2 1 6 6 C 1.31924 * 109.06373 * 0.02562 * 5 3 2 7 7 C 1.41381 * 134.39834 * 180.02562 * 6 5 3 8 8 C 1.35194 * 119.93366 * 179.97438 * 7 6 5 9 9 C 1.41035 * 121.65130 * 0.02562 * 8 7 6 10 10 C 1.47524 * 119.38911 * 179.97438 * 9 8 7 11 11 O 1.21604 * 119.99534 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00276 * 359.97438 * 10 9 8 13 13 C 1.46494 * 120.00266 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.68047 * 37.12057 * 13 12 10 15 15 C 1.54849 * 110.62694 * 160.10674 * 13 12 10 16 16 C 1.56307 * 103.40245 * 118.36768 * 15 13 12 17 17 H 1.09000 * 115.71334 * 158.93705 * 16 15 13 18 18 C 1.55842 * 105.08350 * 288.42591 * 16 15 13 19 19 C 1.54221 * 103.56483 * 71.68986 * 18 16 15 20 20 C 1.55844 * 110.63037 * 274.13955 * 13 12 10 21 21 H 1.08995 * 115.56649 * 82.69100 * 20 13 12 22 22 N 1.50235 * 100.84234 * 33.12438 * 16 15 13 23 23 C 1.36935 * 130.84121 * 126.10007 * 22 16 15 24 24 H 1.08001 * 120.00310 * 189.84068 * 23 22 16 25 25 C 1.38817 * 119.99861 * 9.84685 * 23 22 16 26 26 N 1.31621 * 119.99523 * 9.13053 * 25 23 22 27 27 Si 1.86795 * 119.99921 * 189.12789 * 25 23 22 28 28 H 1.48505 * 109.47335 * 265.01881 * 27 25 23 29 29 H 1.48508 * 109.47020 * 145.02058 * 27 25 23 30 30 H 1.48502 * 109.47433 * 25.02103 * 27 25 23 31 31 C 1.38218 * 121.21830 * 0.27119 * 9 8 7 32 32 C 1.38542 * 126.08275 * 180.02562 * 2 1 3 33 33 H 1.09004 * 109.47325 * 89.97657 * 1 2 3 34 34 H 1.09004 * 109.47217 * 209.97250 * 1 2 3 35 35 H 1.08994 * 109.47509 * 329.97609 * 1 2 3 36 36 H 1.08000 * 120.03530 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.17181 * 180.02562 * 8 7 6 38 38 H 0.97003 * 119.99675 * 0.02562 * 12 10 9 39 39 H 1.09000 * 110.63050 * 236.98146 * 15 13 12 40 40 H 1.09001 * 110.62899 * 0.02562 * 15 13 12 41 41 H 1.08992 * 110.62955 * 190.09146 * 18 16 15 42 42 H 1.09002 * 110.62645 * 312.95851 * 18 16 15 43 43 H 1.09000 * 110.64734 * 241.44256 * 19 18 16 44 44 H 1.08996 * 110.49815 * 118.49321 * 19 18 16 45 45 H 0.97004 * 119.99535 * 180.02562 * 26 25 23 46 46 H 1.08005 * 120.33051 * 179.72211 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0815 0.0000 4 1 1.9803 1.9990 0.0004 5 7 3.6397 0.6946 -0.0006 6 6 3.7089 -0.6228 -0.0015 7 6 4.7696 -1.5576 -0.0020 8 6 4.5011 -2.8826 -0.0024 9 6 3.1775 -3.3695 -0.0031 10 6 2.9418 -4.8258 -0.0041 11 8 1.8051 -5.2577 -0.0051 12 7 3.9863 -5.6775 -0.0051 13 6 3.7523 -7.1236 -0.0056 14 1 2.8877 -7.3735 -0.6207 15 6 5.0101 -7.8796 -0.4997 16 6 5.4103 -8.7590 0.7290 17 1 6.0363 -9.6235 0.5080 18 6 5.9726 -7.7553 1.7802 19 6 4.7184 -7.0025 2.2687 20 6 3.5614 -7.6495 1.4490 21 1 2.5591 -7.5368 1.8622 22 7 4.0592 -9.0605 1.3128 23 6 3.4662 -10.2536 1.6289 24 1 2.4201 -10.2828 1.8958 25 6 4.2097 -11.4257 1.6064 26 7 5.5166 -11.3731 1.4591 27 14 3.3555 -13.0772 1.7853 28 1 3.3896 -13.5007 3.2082 29 1 4.0533 -14.0884 0.9510 30 1 1.9444 -12.9556 1.3387 31 6 2.0971 -2.5075 -0.0088 32 6 2.3229 -1.1197 -0.0005 33 1 -0.3634 0.0004 -1.0277 34 1 -0.3634 -0.8903 0.5134 35 1 -0.3634 0.8897 0.5142 36 1 5.7934 -1.2136 -0.0019 37 1 5.3208 -3.5858 -0.0024 38 1 4.8931 -5.3329 -0.0046 39 1 4.7695 -8.5044 -1.3598 40 1 5.8082 -7.1786 -0.7440 41 1 6.4438 -8.2880 2.6061 42 1 6.6794 -7.0680 1.3151 43 1 4.7979 -5.9384 2.0464 44 1 4.5687 -7.1627 3.3363 45 1 6.0361 -12.1922 1.4430 46 1 1.0894 -2.8960 -0.0137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095741776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:32 Heat of formation + Delta-G solvation = 83.699665 kcal Electronic energy + Delta-G solvation = -29137.247825 eV Core-core repulsion = 25221.683632 eV Total energy + Delta-G solvation = -3915.564193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.43733 -41.45567 -39.90440 -37.69367 -35.45561 -34.19986 -34.11172 -31.93093 -31.24796 -31.00961 -30.60335 -29.25526 -27.91431 -26.17453 -25.11135 -23.89537 -22.76937 -21.81440 -21.22153 -20.94902 -20.13809 -19.05155 -18.72533 -18.36209 -17.36674 -16.94912 -16.79510 -16.44041 -16.23437 -15.89069 -15.47145 -15.27284 -15.18671 -14.92687 -14.40599 -14.05914 -13.90462 -13.84514 -13.80035 -13.40753 -13.19418 -13.13001 -12.83082 -12.80215 -12.66516 -12.56551 -12.50306 -12.31216 -11.95752 -11.88174 -11.59120 -11.36963 -11.25933 -11.18397 -10.94327 -10.79723 -10.73532 -9.99437 -9.83842 -8.81441 -8.61674 -7.81931 -5.17009 -0.51568 0.40377 1.28359 1.47284 1.47974 1.57569 1.70011 2.00925 2.24649 2.53083 2.93290 3.20144 3.33875 3.48172 3.54902 3.85037 3.90602 3.99795 4.04964 4.14492 4.19326 4.27520 4.42716 4.48837 4.52864 4.54416 4.65001 4.68658 4.72981 4.75542 4.83634 5.02459 5.07605 5.11693 5.12412 5.18045 5.25362 5.36491 5.37408 5.38264 5.43578 5.50866 5.60477 5.73512 5.80458 5.90956 6.16292 6.24053 6.50833 6.71454 7.05282 7.37615 7.69991 8.59017 9.28594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.002391 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.763439 B =11708.674031 C =12361.690131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.157 3.843 3 N -0.411 5.411 4 H 0.459 0.541 5 N -0.342 5.342 6 C 0.106 3.894 7 C -0.120 4.120 8 C -0.045 4.045 9 C -0.194 4.194 10 C 0.559 3.441 11 O -0.589 6.589 12 N -0.695 5.695 13 C 0.149 3.851 14 H 0.057 0.943 15 C -0.128 4.128 16 C 0.147 3.853 17 H 0.107 0.893 18 C -0.121 4.121 19 C -0.117 4.117 20 C 0.117 3.883 21 H 0.065 0.935 22 N -0.617 5.617 23 C -0.227 4.227 24 H 0.068 0.932 25 C -0.061 4.061 26 N -0.940 5.940 27 Si 0.973 3.027 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.276 1.276 31 C 0.041 3.959 32 C -0.249 4.249 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.412 0.588 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.030 0.970 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.035 0.965 45 H 0.249 0.751 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 27.870 -4.959 28.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.016 3.984 3 N -0.113 5.113 4 H 0.308 0.692 5 N -0.169 5.169 6 C -0.048 4.048 7 C -0.141 4.141 8 C -0.067 4.067 9 C -0.199 4.199 10 C 0.349 3.651 11 O -0.471 6.471 12 N -0.347 5.347 13 C 0.042 3.958 14 H 0.076 0.924 15 C -0.168 4.168 16 C 0.041 3.959 17 H 0.125 0.875 18 C -0.160 4.160 19 C -0.156 4.156 20 C 0.009 3.991 21 H 0.083 0.917 22 N -0.339 5.339 23 C -0.356 4.356 24 H 0.086 0.914 25 C -0.255 4.255 26 N -0.589 5.589 27 Si 0.802 3.198 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.202 1.202 31 C 0.020 3.980 32 C -0.259 4.259 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.251 0.749 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.049 0.951 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.334 28.384 -4.924 29.132 hybrid contribution -0.621 -1.493 0.364 1.657 sum -4.955 26.891 -4.559 27.721 Atomic orbital electron populations 1.20862 0.82814 1.06422 1.05830 1.21961 0.96071 0.86159 0.94253 1.46317 1.03881 1.09730 1.51341 0.69241 1.77590 0.94511 1.12159 1.32680 1.21373 0.94981 0.91297 0.97199 1.19958 0.97603 0.90557 1.06004 1.20833 0.95185 0.95692 0.95000 1.19383 0.95008 0.91248 1.14224 1.18534 0.84410 0.86918 0.75218 1.90745 1.23900 1.79802 1.52696 1.45861 1.09510 1.05436 1.73875 1.22057 0.98062 0.78758 0.96890 0.92444 1.23239 0.96423 0.98623 0.98515 1.23450 0.87174 0.94801 0.90518 0.87542 1.22769 0.96596 0.97716 0.98897 1.22691 0.95660 0.99201 0.98081 1.23333 0.95800 0.85024 0.94900 0.91684 1.46721 1.15739 0.99659 1.71768 1.19257 0.93207 0.84363 1.38757 0.91385 1.25442 0.96130 1.00567 1.03315 1.69861 1.04871 1.26557 1.57599 0.85150 0.77690 0.79899 0.77095 1.21665 1.21655 1.20152 1.20729 0.99097 0.89820 0.88369 1.19456 0.93038 0.93900 1.19486 0.87350 0.88584 0.87356 0.83149 0.82861 0.74921 0.92775 0.88272 0.95071 0.89329 0.89538 0.94559 0.94190 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 10.44 71.23 0.74 0.32 16 2 C 0.16 2.02 7.28 42.33 0.31 2.33 16 3 N -0.41 -5.14 7.17 -46.73 -0.34 -5.47 16 4 H 0.46 1.92 8.96 -213.44 -1.91 0.01 16 5 N -0.34 -7.11 12.69 -48.55 -0.62 -7.73 16 6 C 0.11 2.33 7.49 42.27 0.32 2.65 16 7 C -0.12 -2.32 10.05 22.34 0.22 -2.09 16 8 C -0.04 -0.85 9.39 22.25 0.21 -0.64 16 9 C -0.19 -4.74 5.86 -20.15 -0.12 -4.86 16 10 C 0.56 17.15 7.75 86.69 0.67 17.82 16 11 O -0.59 -23.03 15.99 -4.04 -0.06 -23.10 16 12 N -0.69 -19.46 3.58 -438.08 -1.57 -21.03 16 13 C 0.15 5.47 3.07 46.61 0.14 5.61 16 14 H 0.06 2.42 7.71 -2.39 -0.02 2.40 16 15 C -0.13 -4.58 6.22 32.38 0.20 -4.38 16 16 C 0.15 6.57 4.65 46.39 0.22 6.79 16 17 H 0.11 5.58 5.90 -2.39 -0.01 5.56 16 18 C -0.12 -4.56 6.41 31.99 0.21 -4.35 16 19 C -0.12 -4.29 6.29 31.99 0.20 -4.09 16 20 C 0.12 5.04 5.35 46.23 0.25 5.29 16 21 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 22 N -0.62 -31.66 2.97 -614.37 -1.83 -33.48 16 23 C -0.23 -13.02 10.55 84.04 0.89 -12.14 16 24 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 25 C -0.06 -3.49 5.46 84.86 0.46 -3.02 16 26 N -0.94 -55.19 10.75 21.65 0.23 -54.96 16 27 Si 0.97 46.58 29.56 68.60 2.03 48.61 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 30 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 31 C 0.04 0.95 9.64 22.84 0.22 1.17 16 32 C -0.25 -5.04 6.25 -20.26 -0.13 -5.16 16 33 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.15 2.04 6.27 -2.91 -0.02 2.02 16 38 H 0.41 8.57 5.94 -92.71 -0.55 8.02 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.10 2.66 7.35 -2.39 -0.02 2.65 16 41 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 2.55 7.83 -2.39 -0.02 2.53 16 43 H 0.09 2.55 6.48 -2.39 -0.02 2.53 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.14 3.07 7.58 -2.91 -0.02 3.05 16 Total: -1.00 -79.07 371.44 1.44 -77.63 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -1.42 Total: 18.29 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.01 Total: 1.25 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -4.11 Total: -122.68 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -79.07 1.44 -77.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095741776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.330 kcal (2) G-P(sol) polarization free energy of solvation -79.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds