Wall clock time and date at job start Tue Mar 31 2020 23:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38895 * 119.73722 * 2 1 4 4 C 1.36685 * 120.89148 * 179.70053 * 3 2 1 5 5 C 1.39118 * 119.78732 * 0.28177 * 4 3 2 6 6 N 1.37053 * 134.72623 * 179.97438 * 5 4 3 7 7 H 0.96994 * 124.37468 * 0.02982 * 6 5 4 8 8 N 1.28389 * 111.25409 * 180.02562 * 6 5 4 9 9 C 1.31570 * 111.96709 * 359.97438 * 8 6 5 10 10 C 1.47390 * 126.82576 * 180.02562 * 9 8 6 11 11 O 1.21610 * 120.00311 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99764 * 359.97438 * 10 9 8 13 13 C 1.46495 * 120.00183 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.55797 * 32.09877 * 13 12 10 15 15 C 1.54856 * 110.62870 * 269.02727 * 13 12 10 16 16 C 1.55837 * 103.44854 * 241.51176 * 15 13 12 17 17 H 1.08997 * 115.56292 * 158.81246 * 16 15 13 18 18 C 1.55852 * 105.74016 * 287.98892 * 16 15 13 19 19 C 1.57710 * 103.12364 * 70.91014 * 18 16 15 20 20 C 1.55843 * 110.62763 * 155.00095 * 13 12 10 21 21 H 1.08992 * 115.56419 * 319.68122 * 20 13 12 22 22 N 1.50233 * 101.05361 * 32.93434 * 16 15 13 23 23 C 1.36944 * 130.84121 * 126.01104 * 22 16 15 24 24 H 1.07996 * 119.99922 * 180.02562 * 23 22 16 25 25 C 1.38805 * 119.99643 * 0.02892 * 23 22 16 26 26 N 1.31618 * 120.00260 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00048 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47015 * 90.00137 * 27 25 23 29 29 H 1.48497 * 109.47400 * 210.00398 * 27 25 23 30 30 H 1.48498 * 109.47066 * 330.00450 * 27 25 23 31 31 C 1.40869 * 119.22446 * 359.97438 * 5 4 3 32 32 C 1.36720 * 119.73668 * 180.25132 * 2 1 3 33 33 H 1.09003 * 109.47138 * 89.99627 * 1 2 3 34 34 H 1.09006 * 109.47390 * 209.99776 * 1 2 3 35 35 H 1.08997 * 109.47131 * 329.99544 * 1 2 3 36 36 H 1.08002 * 119.55685 * 359.97438 * 3 2 1 37 37 H 1.08004 * 120.10691 * 180.25924 * 4 3 2 38 38 H 0.97004 * 119.99673 * 0.02562 * 12 10 9 39 39 H 1.08998 * 110.62297 * 0.02562 * 15 13 12 40 40 H 1.09002 * 110.62430 * 123.01453 * 15 13 12 41 41 H 1.08994 * 110.62642 * 190.49731 * 18 16 15 42 42 H 1.09005 * 110.62397 * 313.36312 * 18 16 15 43 43 H 1.09006 * 111.90840 * 242.53773 * 19 18 16 44 44 H 1.08994 * 110.07049 * 119.02244 * 19 18 16 45 45 H 0.97004 * 120.00619 * 179.97438 * 26 25 23 46 46 H 1.07998 * 120.24580 * 0.03096 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2060 0.0000 4 6 3.5625 1.2336 0.0061 5 6 4.2778 0.0404 0.0065 6 7 5.6089 -0.2862 0.0112 7 1 6.3314 0.3608 0.0159 8 7 5.7758 -1.5592 0.0087 9 6 4.6300 -2.2058 0.0029 10 6 4.4404 -3.6674 -0.0009 11 8 3.3178 -4.1351 -0.0068 12 7 5.5113 -4.4858 0.0011 13 6 5.3230 -5.9386 -0.0021 14 1 4.4182 -6.2061 -0.5479 15 6 5.2727 -6.4854 1.4458 16 6 6.4914 -7.4545 1.5099 17 1 6.8642 -7.6758 2.5099 18 6 6.0925 -8.6927 0.6517 19 6 6.1221 -8.1316 -0.8220 20 6 6.5654 -6.6519 -0.6158 21 1 7.0034 -6.1663 -1.4877 22 7 7.4568 -6.7645 0.5885 23 6 8.7507 -6.3617 0.7856 24 1 9.2912 -5.8725 -0.0112 25 6 9.3673 -6.5822 2.0094 26 7 8.7087 -7.1788 2.9802 27 14 11.1326 -6.0334 2.2782 28 1 11.1446 -4.6443 2.8031 29 1 11.7888 -6.9378 3.2562 30 1 11.8677 -6.0816 0.9888 31 6 3.5770 -1.1816 0.0011 32 6 2.1851 -1.1871 -0.0052 33 1 -0.3633 0.0001 -1.0277 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3633 0.8899 0.5139 36 1 1.6444 2.1346 -0.0004 37 1 4.0853 2.1786 0.0103 38 1 6.4068 -4.1128 0.0054 39 1 5.3873 -5.6755 2.1662 40 1 4.3424 -7.0262 1.6198 41 1 6.8091 -9.5023 0.7894 42 1 5.0855 -9.0258 0.9030 43 1 5.1406 -8.1762 -1.2940 44 1 6.8589 -8.6743 -1.4141 45 1 9.1397 -7.3333 3.8354 46 1 1.6449 -2.1223 -0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097425106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:56 Heat of formation + Delta-G solvation = 92.945121 kcal Electronic energy + Delta-G solvation = -29341.038190 eV Core-core repulsion = 25425.874911 eV Total energy + Delta-G solvation = -3915.163279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51659 -39.58303 -38.28598 -38.08519 -33.75206 -32.82852 -32.42897 -31.90444 -30.11662 -29.03492 -28.71205 -27.76475 -26.94796 -24.32925 -23.81931 -23.13911 -21.75348 -21.05387 -19.80082 -19.57587 -18.67347 -18.24867 -17.29688 -16.97181 -16.19821 -15.84066 -15.61721 -15.34748 -14.79264 -14.32428 -14.20709 -14.13333 -13.86758 -13.76501 -13.68268 -13.37540 -12.77844 -12.37360 -12.07981 -12.00460 -11.81249 -11.77443 -11.34207 -11.21359 -11.09504 -10.94618 -10.89972 -10.88354 -10.50798 -10.30861 -10.17953 -10.07872 -9.92938 -9.79387 -9.26547 -9.15491 -8.94532 -8.82229 -8.46177 -8.08829 -6.91854 -5.71835 -3.10699 0.74302 1.20548 1.92691 2.61206 3.37745 3.40090 3.42805 3.44707 3.50633 3.75284 4.30458 4.41337 4.43083 4.66474 4.73697 4.94556 5.16258 5.20909 5.26636 5.38669 5.42434 5.45926 5.54325 5.66935 5.72060 5.82877 5.85215 5.90600 6.04204 6.06098 6.13738 6.20240 6.28307 6.33259 6.44417 6.45670 6.51743 6.62236 6.66862 6.76972 6.85373 6.89308 6.98617 7.14209 7.36151 7.49975 7.69611 7.81629 8.08013 8.19992 8.60081 9.09961 9.73186 10.54211 11.37148 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.003084 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.325618 B = 9076.596366 C =10445.099442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.113 4.113 3 C -0.084 4.084 4 C -0.118 4.118 5 C 0.058 3.942 6 N -0.417 5.417 7 H 0.446 0.554 8 N -0.201 5.201 9 C 0.011 3.989 10 C 0.599 3.401 11 O -0.542 6.542 12 N -0.688 5.688 13 C 0.127 3.873 14 H 0.083 0.917 15 C -0.143 4.143 16 C 0.152 3.848 17 H 0.152 0.848 18 C -0.136 4.136 19 C -0.130 4.130 20 C 0.125 3.875 21 H 0.087 0.913 22 N -0.590 5.590 23 C -0.212 4.212 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 C -0.105 4.105 32 C -0.041 4.041 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.409 0.591 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.253 0.747 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.362 14.626 -6.629 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.114 4.114 3 C -0.104 4.104 4 C -0.140 4.140 5 C -0.055 4.055 6 N -0.136 5.136 7 H 0.291 0.709 8 N -0.031 5.031 9 C -0.160 4.160 10 C 0.382 3.618 11 O -0.418 6.418 12 N -0.337 5.337 13 C 0.021 3.979 14 H 0.101 0.899 15 C -0.183 4.183 16 C 0.046 3.954 17 H 0.169 0.831 18 C -0.175 4.175 19 C -0.170 4.170 20 C 0.017 3.983 21 H 0.105 0.895 22 N -0.311 5.311 23 C -0.340 4.340 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.218 1.218 29 H -0.217 1.217 30 H -0.208 1.208 31 C -0.112 4.112 32 C -0.061 4.061 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.245 0.755 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.692 14.094 -6.447 19.415 hybrid contribution 1.119 1.113 0.177 1.588 sum -10.574 15.207 -6.270 19.555 Atomic orbital electron populations 1.20743 0.90698 1.02855 1.02319 1.19563 0.96454 0.92532 1.02848 1.20591 0.93025 0.97849 0.98971 1.19721 0.93797 0.94626 1.05821 1.19215 0.85023 0.96157 1.05084 1.43046 1.05933 1.04247 1.60380 0.70901 1.73007 1.26039 0.91330 1.12681 1.22981 0.88037 0.94758 1.10269 1.16663 0.85234 0.82659 0.77214 1.90751 1.23684 1.75718 1.51685 1.45900 1.08876 1.07187 1.71782 1.22732 0.99290 0.77659 0.98173 0.89921 1.23453 0.99335 1.00390 0.95116 1.23743 0.85749 0.88022 0.97890 0.83079 1.23515 0.98890 0.99776 0.95325 1.23366 0.99179 0.97054 0.97371 1.23144 0.89639 0.94023 0.91537 0.89503 1.46524 1.09468 1.67033 1.08067 1.19001 0.86203 1.31303 0.97492 0.90412 1.24684 0.98393 1.01416 0.96097 1.69460 1.35761 1.47504 1.04043 0.86073 0.84112 0.77818 0.77472 1.21773 1.21745 1.20823 1.19418 0.94236 0.90614 1.06952 1.20275 0.91194 0.98671 0.95989 0.91262 0.91301 0.91642 0.85283 0.85492 0.75506 0.92138 0.92662 0.92447 0.93442 0.92662 0.92500 0.93592 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.99 36.01 0.36 -0.46 16 2 C -0.11 -1.16 5.85 -104.93 -0.61 -1.77 16 3 C -0.08 -0.74 9.60 -39.90 -0.38 -1.13 16 4 C -0.12 -1.10 10.03 -39.82 -0.40 -1.50 16 5 C 0.06 0.71 7.38 -84.21 -0.62 0.09 16 6 N -0.42 -4.90 6.85 32.34 0.22 -4.68 16 7 H 0.45 3.47 8.96 -190.49 -1.71 1.77 16 8 N -0.20 -3.06 11.80 34.46 0.41 -2.65 16 9 C 0.01 0.19 7.32 -80.76 -0.59 -0.40 16 10 C 0.60 11.14 7.81 -12.53 -0.10 11.04 16 11 O -0.54 -11.00 16.05 5.27 0.08 -10.91 16 12 N -0.69 -12.87 5.07 -52.48 -0.27 -13.13 16 13 C 0.13 2.45 2.80 -65.44 -0.18 2.26 16 14 H 0.08 1.55 7.21 -51.93 -0.37 1.18 16 15 C -0.14 -2.96 6.24 -24.24 -0.15 -3.12 16 16 C 0.15 3.49 4.67 -62.80 -0.29 3.20 16 17 H 0.15 3.98 5.52 -51.93 -0.29 3.69 16 18 C -0.14 -2.69 6.58 -22.63 -0.15 -2.84 16 19 C -0.13 -2.36 6.60 -22.64 -0.15 -2.51 16 20 C 0.13 2.48 5.01 -62.80 -0.31 2.17 16 21 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 22 N -0.59 -14.12 2.99 -145.82 -0.44 -14.55 16 23 C -0.21 -5.60 10.59 -15.06 -0.16 -5.76 16 24 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 26 N -0.92 -25.97 10.46 55.49 0.58 -25.39 16 27 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 31 C -0.10 -1.56 6.34 -105.05 -0.67 -2.22 16 32 C -0.04 -0.54 9.50 -39.78 -0.38 -0.92 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.41 7.77 8.39 -40.82 -0.34 7.42 16 39 H 0.06 1.37 7.98 -51.93 -0.41 0.96 16 40 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 43 H 0.05 0.88 7.81 -51.93 -0.41 0.47 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.14 1.90 7.65 -52.49 -0.40 1.50 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -31.46 376.12 -11.32 -42.78 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.67 Total: 10.46 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -4.89 Total: -4.25 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.51 Total: -60.39 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.46 -11.32 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097425106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.726 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds