Wall clock time and date at job start Tue Mar 31 2020 23:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38895 * 119.73722 * 2 1 4 4 C 1.36685 * 120.89148 * 179.70053 * 3 2 1 5 5 C 1.39118 * 119.78732 * 0.28177 * 4 3 2 6 6 N 1.37053 * 134.72623 * 179.97438 * 5 4 3 7 7 H 0.96994 * 124.37468 * 0.02982 * 6 5 4 8 8 N 1.28389 * 111.25409 * 180.02562 * 6 5 4 9 9 C 1.31570 * 111.96709 * 359.97438 * 8 6 5 10 10 C 1.47390 * 126.82576 * 180.02562 * 9 8 6 11 11 O 1.21610 * 120.00311 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99764 * 359.97438 * 10 9 8 13 13 C 1.46495 * 120.00183 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.55797 * 32.09877 * 13 12 10 15 15 C 1.54856 * 110.62870 * 269.02727 * 13 12 10 16 16 C 1.55837 * 103.44854 * 241.51176 * 15 13 12 17 17 H 1.08997 * 115.56292 * 158.81246 * 16 15 13 18 18 C 1.55852 * 105.74016 * 287.98892 * 16 15 13 19 19 C 1.57710 * 103.12364 * 70.91014 * 18 16 15 20 20 C 1.55843 * 110.62763 * 155.00095 * 13 12 10 21 21 H 1.08992 * 115.56419 * 319.68122 * 20 13 12 22 22 N 1.50233 * 101.05361 * 32.93434 * 16 15 13 23 23 C 1.36944 * 130.84121 * 126.01104 * 22 16 15 24 24 H 1.07996 * 119.99922 * 180.02562 * 23 22 16 25 25 C 1.38805 * 119.99643 * 0.02892 * 23 22 16 26 26 N 1.31618 * 120.00260 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00048 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47015 * 90.00137 * 27 25 23 29 29 H 1.48497 * 109.47400 * 210.00398 * 27 25 23 30 30 H 1.48498 * 109.47066 * 330.00450 * 27 25 23 31 31 C 1.40869 * 119.22446 * 359.97438 * 5 4 3 32 32 C 1.36720 * 119.73668 * 180.25132 * 2 1 3 33 33 H 1.09003 * 109.47138 * 89.99627 * 1 2 3 34 34 H 1.09006 * 109.47390 * 209.99776 * 1 2 3 35 35 H 1.08997 * 109.47131 * 329.99544 * 1 2 3 36 36 H 1.08002 * 119.55685 * 359.97438 * 3 2 1 37 37 H 1.08004 * 120.10691 * 180.25924 * 4 3 2 38 38 H 0.97004 * 119.99673 * 0.02562 * 12 10 9 39 39 H 1.08998 * 110.62297 * 0.02562 * 15 13 12 40 40 H 1.09002 * 110.62430 * 123.01453 * 15 13 12 41 41 H 1.08994 * 110.62642 * 190.49731 * 18 16 15 42 42 H 1.09005 * 110.62397 * 313.36312 * 18 16 15 43 43 H 1.09006 * 111.90840 * 242.53773 * 19 18 16 44 44 H 1.08994 * 110.07049 * 119.02244 * 19 18 16 45 45 H 0.97004 * 120.00619 * 179.97438 * 26 25 23 46 46 H 1.07998 * 120.24580 * 0.03096 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2060 0.0000 4 6 3.5625 1.2336 0.0061 5 6 4.2778 0.0404 0.0065 6 7 5.6089 -0.2862 0.0112 7 1 6.3314 0.3608 0.0159 8 7 5.7758 -1.5592 0.0087 9 6 4.6300 -2.2058 0.0029 10 6 4.4404 -3.6674 -0.0009 11 8 3.3178 -4.1351 -0.0068 12 7 5.5113 -4.4858 0.0011 13 6 5.3230 -5.9386 -0.0021 14 1 4.4182 -6.2061 -0.5479 15 6 5.2727 -6.4854 1.4458 16 6 6.4914 -7.4545 1.5099 17 1 6.8642 -7.6758 2.5099 18 6 6.0925 -8.6927 0.6517 19 6 6.1221 -8.1316 -0.8220 20 6 6.5654 -6.6519 -0.6158 21 1 7.0034 -6.1663 -1.4877 22 7 7.4568 -6.7645 0.5885 23 6 8.7507 -6.3617 0.7856 24 1 9.2912 -5.8725 -0.0112 25 6 9.3673 -6.5822 2.0094 26 7 8.7087 -7.1788 2.9802 27 14 11.1326 -6.0334 2.2782 28 1 11.1446 -4.6443 2.8031 29 1 11.7888 -6.9378 3.2562 30 1 11.8677 -6.0816 0.9888 31 6 3.5770 -1.1816 0.0011 32 6 2.1851 -1.1871 -0.0052 33 1 -0.3633 0.0001 -1.0277 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3633 0.8899 0.5139 36 1 1.6444 2.1346 -0.0004 37 1 4.0853 2.1786 0.0103 38 1 6.4068 -4.1128 0.0054 39 1 5.3873 -5.6755 2.1662 40 1 4.3424 -7.0262 1.6198 41 1 6.8091 -9.5023 0.7894 42 1 5.0855 -9.0258 0.9030 43 1 5.1406 -8.1762 -1.2940 44 1 6.8589 -8.6743 -1.4141 45 1 9.1397 -7.3333 3.8354 46 1 1.6449 -2.1223 -0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097425106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:55 Heat of formation + Delta-G solvation = 73.456345 kcal Electronic energy + Delta-G solvation = -29341.883287 eV Core-core repulsion = 25425.874911 eV Total energy + Delta-G solvation = -3916.008376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.52602 -41.16353 -39.65919 -39.11244 -35.32900 -34.40884 -33.69248 -32.80536 -31.10449 -30.91584 -30.29553 -29.31254 -27.79328 -26.16319 -25.17706 -24.01792 -22.76591 -22.39003 -21.50295 -21.04330 -20.27350 -19.25214 -18.84236 -18.46300 -17.41296 -16.99996 -16.90854 -16.73629 -16.15689 -15.89085 -15.68351 -15.34917 -15.02867 -14.95272 -14.81608 -14.39075 -14.33561 -13.70554 -13.65018 -13.01096 -12.91939 -12.88632 -12.81601 -12.75609 -12.69378 -12.55707 -12.22428 -12.12242 -11.97782 -11.93748 -11.88605 -11.66524 -11.36036 -11.19518 -11.01510 -10.93599 -10.77368 -10.01520 -9.69946 -9.02105 -8.85610 -7.75069 -5.14707 -0.24248 0.32673 0.83450 1.47804 1.48422 1.56576 1.68711 2.16228 2.23540 2.50415 2.74267 3.23846 3.37991 3.43869 3.46342 3.73111 3.97885 4.01357 4.05862 4.19977 4.27766 4.32499 4.42427 4.43989 4.49910 4.59231 4.65069 4.70587 4.80311 4.84687 4.91545 4.91670 5.04508 5.06849 5.17370 5.19700 5.21098 5.25317 5.36796 5.39039 5.51350 5.57683 5.65606 5.70534 5.85327 5.90112 6.08700 6.28478 6.47806 6.76069 7.06860 7.14415 7.73240 8.59245 9.32121 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.003084 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.325618 B = 9076.596366 C =10445.099442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.081 4.081 4 C -0.106 4.106 5 C 0.049 3.951 6 N -0.396 5.396 7 H 0.463 0.537 8 N -0.210 5.210 9 C -0.029 4.029 10 C 0.599 3.401 11 O -0.566 6.566 12 N -0.691 5.691 13 C 0.138 3.862 14 H 0.094 0.906 15 C -0.133 4.133 16 C 0.139 3.861 17 H 0.115 0.885 18 C -0.129 4.129 19 C -0.118 4.118 20 C 0.125 3.875 21 H 0.098 0.902 22 N -0.610 5.610 23 C -0.213 4.213 24 H 0.083 0.917 25 C -0.068 4.068 26 N -0.948 5.948 27 Si 0.974 3.026 28 H -0.292 1.292 29 H -0.299 1.299 30 H -0.271 1.271 31 C -0.131 4.131 32 C -0.078 4.078 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.407 0.593 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.245 0.755 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.515 17.534 -8.224 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.101 4.101 4 C -0.126 4.126 5 C -0.064 4.064 6 N -0.118 5.118 7 H 0.312 0.688 8 N -0.042 5.042 9 C -0.199 4.199 10 C 0.385 3.615 11 O -0.444 6.444 12 N -0.339 5.339 13 C 0.032 3.968 14 H 0.112 0.888 15 C -0.173 4.173 16 C 0.033 3.967 17 H 0.132 0.868 18 C -0.168 4.168 19 C -0.158 4.158 20 C 0.018 3.982 21 H 0.116 0.884 22 N -0.331 5.331 23 C -0.342 4.342 24 H 0.101 0.899 25 C -0.260 4.260 26 N -0.598 5.598 27 Si 0.803 3.197 28 H -0.220 1.220 29 H -0.226 1.226 30 H -0.196 1.196 31 C -0.138 4.138 32 C -0.098 4.098 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.188 0.812 37 H 0.185 0.815 38 H 0.242 0.758 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.860 17.014 -8.079 22.806 hybrid contribution 1.374 0.370 0.659 1.568 sum -11.486 17.384 -7.420 22.118 Atomic orbital electron populations 1.20832 0.88728 1.03796 1.03329 1.19967 0.97964 0.92096 1.00137 1.21097 0.93104 0.98672 0.97220 1.20250 0.94104 0.94914 1.03377 1.19512 0.84697 0.96419 1.05782 1.43088 1.06782 1.03505 1.58470 0.68831 1.72890 1.25876 0.92841 1.12610 1.22696 0.89527 0.94001 1.13643 1.16931 0.84666 0.83700 0.76245 1.90711 1.24385 1.76520 1.52827 1.45871 1.08852 1.07022 1.72157 1.22598 0.99381 0.78056 0.96812 0.88821 1.23319 0.99163 0.99189 0.95652 1.23583 0.86274 0.90008 0.96853 0.86759 1.23397 0.99691 0.97770 0.95931 1.23319 1.01034 0.95181 0.96238 1.23353 0.88888 0.95409 0.90569 0.88395 1.46709 1.09257 1.67268 1.09909 1.19335 0.87379 1.30083 0.97401 0.89939 1.25413 1.01786 1.02542 0.96268 1.69717 1.36790 1.49188 1.04059 0.85133 0.80358 0.76810 0.77355 1.21966 1.22612 1.19584 1.19655 0.94906 0.91142 1.08105 1.20285 0.90908 0.99349 0.99258 0.90084 0.91944 0.89162 0.81174 0.81523 0.75819 0.95092 0.91028 0.94012 0.90998 0.89458 0.92114 0.94544 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.99 71.24 0.71 -0.67 16 2 C -0.10 -1.86 5.85 -20.06 -0.12 -1.98 16 3 C -0.08 -1.09 9.60 22.06 0.21 -0.88 16 4 C -0.11 -1.56 10.03 22.12 0.22 -1.34 16 5 C 0.05 1.12 7.38 39.18 0.29 1.41 16 6 N -0.40 -8.83 6.85 -51.60 -0.35 -9.18 16 7 H 0.46 6.30 8.96 -220.04 -1.97 4.33 16 8 N -0.21 -6.45 11.80 -44.88 -0.53 -6.98 16 9 C -0.03 -1.01 7.32 43.86 0.32 -0.69 16 10 C 0.60 23.20 7.81 86.65 0.68 23.88 16 11 O -0.57 -23.90 16.05 -4.06 -0.07 -23.96 16 12 N -0.69 -26.53 5.07 -438.20 -2.22 -28.75 16 13 C 0.14 5.28 2.80 46.61 0.13 5.41 16 14 H 0.09 3.43 7.21 -2.39 -0.02 3.41 16 15 C -0.13 -5.65 6.24 32.21 0.20 -5.45 16 16 C 0.14 6.55 4.67 46.23 0.22 6.77 16 17 H 0.12 6.34 5.52 -2.39 -0.01 6.33 16 18 C -0.13 -5.03 6.58 33.25 0.22 -4.81 16 19 C -0.12 -4.07 6.60 33.25 0.22 -3.85 16 20 C 0.13 4.87 5.01 46.23 0.23 5.10 16 21 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 22 N -0.61 -29.61 2.99 -615.26 -1.84 -31.45 16 23 C -0.21 -11.44 10.59 84.03 0.89 -10.55 16 24 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 25 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 26 N -0.95 -55.75 10.46 21.65 0.23 -55.52 16 27 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 29 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 30 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 31 C -0.13 -3.93 6.34 -20.14 -0.13 -4.06 16 32 C -0.08 -2.08 9.50 22.14 0.21 -1.87 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.87 8.08 -2.38 -0.02 0.86 16 35 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 36 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.41 15.95 8.39 -92.71 -0.78 15.17 16 39 H 0.03 1.46 7.98 -2.39 -0.02 1.45 16 40 H 0.07 2.75 7.85 -2.39 -0.02 2.74 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 2.43 7.86 -2.38 -0.02 2.41 16 43 H 0.09 2.49 7.81 -2.38 -0.02 2.47 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.12 3.52 7.65 -2.91 -0.02 3.50 16 Total: -1.00 -72.21 376.12 0.50 -71.70 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -1.71 Total: 33.46 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 4.97 Total: 3.13 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -4.72 Total: -131.88 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.07 Total: -23.96 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -72.21 0.50 -71.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097425106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.158 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds