Wall clock time and date at job start Tue Mar 31 2020 23:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33810 * 126.08228 * 2 1 4 4 H 0.97000 * 124.98919 * 359.93606 * 3 2 1 5 5 N 1.39924 * 110.02811 * 179.97438 * 3 2 1 6 6 C 1.31926 * 109.05872 * 0.02562 * 5 3 2 7 7 C 1.41383 * 134.39289 * 180.02562 * 6 5 3 8 8 C 1.35190 * 119.92717 * 179.97438 * 7 6 5 9 9 C 1.41036 * 121.65961 * 0.02562 * 8 7 6 10 10 C 1.47517 * 119.39342 * 179.97438 * 9 8 7 11 11 O 1.21598 * 119.99486 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00339 * 359.97438 * 10 9 8 13 13 C 1.46499 * 120.00333 * 179.97438 * 12 10 9 14 14 H 1.09008 * 110.68243 * 32.01330 * 13 12 10 15 15 C 1.55478 * 110.75775 * 268.96043 * 13 12 10 16 16 C 1.55845 * 103.32174 * 241.51067 * 15 13 12 17 17 H 1.09005 * 116.12422 * 159.23661 * 16 15 13 18 18 C 1.56855 * 105.77912 * 288.56510 * 16 15 13 19 19 C 1.54844 * 103.35668 * 71.46140 * 18 16 15 20 20 C 1.55840 * 110.62582 * 154.99586 * 13 12 10 21 21 H 1.08998 * 115.56895 * 319.68410 * 20 13 12 22 22 N 1.50234 * 101.05342 * 33.02501 * 16 15 13 23 23 C 1.36945 * 130.84057 * 126.06247 * 22 16 15 24 24 H 1.07999 * 120.00077 * 179.66596 * 23 22 16 25 25 C 1.38812 * 119.99637 * 359.66430 * 23 22 16 26 26 N 1.31617 * 120.00227 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99854 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47118 * 90.00067 * 27 25 23 29 29 H 1.48499 * 109.47293 * 210.00071 * 27 25 23 30 30 H 1.48504 * 109.47104 * 330.00316 * 27 25 23 31 31 C 1.38216 * 121.21128 * 0.26311 * 9 8 7 32 32 C 1.38542 * 126.07743 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47095 * 90.02587 * 1 2 3 34 34 H 1.09001 * 109.47462 * 210.03053 * 1 2 3 35 35 H 1.09000 * 109.47457 * 330.02654 * 1 2 3 36 36 H 1.07999 * 120.03524 * 359.95074 * 7 6 5 37 37 H 1.08007 * 119.17005 * 180.02562 * 8 7 6 38 38 H 0.96999 * 119.99702 * 0.02562 * 12 10 9 39 39 H 1.09002 * 110.61164 * 123.09871 * 15 13 12 40 40 H 1.08997 * 110.75754 * 359.97438 * 15 13 12 41 41 H 1.09001 * 110.43268 * 313.10489 * 18 16 15 42 42 H 1.09001 * 111.03898 * 190.09807 * 18 16 15 43 43 H 1.09004 * 110.62498 * 241.78509 * 19 18 16 44 44 H 1.08994 * 110.76793 * 118.82867 * 19 18 16 45 45 H 0.97005 * 120.00046 * 179.97438 * 26 25 23 46 46 H 1.07999 * 120.33045 * 179.72496 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0814 0.0000 4 1 1.9804 1.9990 -0.0009 5 7 3.6397 0.6945 0.0006 6 6 3.7089 -0.6230 0.0004 7 6 4.7696 -1.5577 0.0012 8 6 4.5010 -2.8827 0.0012 9 6 3.1773 -3.3697 -0.0001 10 6 2.9416 -4.8259 -0.0006 11 8 1.8049 -5.2577 -0.0012 12 7 3.9861 -5.6776 -0.0003 13 6 3.7520 -7.1238 -0.0002 14 1 2.8369 -7.3657 -0.5410 15 6 3.6897 -7.6719 1.4535 16 6 4.8782 -8.6784 1.5090 17 1 5.2521 -8.9252 2.5027 18 6 4.4406 -9.9039 0.6332 19 6 4.5000 -9.3503 -0.8117 20 6 4.9692 -7.8770 -0.6164 21 1 5.4197 -7.4071 -1.4906 22 7 5.8603 -8.0157 0.5853 23 6 7.1672 -7.6545 0.7774 24 1 7.7208 -7.1848 -0.0222 25 6 7.7803 -7.8920 1.9999 26 7 7.1058 -8.4648 2.9742 27 14 9.5633 -7.4000 2.2618 28 1 9.6219 -6.0108 2.7833 29 1 10.1929 -8.3230 3.2399 30 1 10.2923 -7.4750 0.9702 31 6 2.0970 -2.5075 -0.0069 32 6 2.3228 -1.1197 0.0005 33 1 -0.3633 -0.0005 -1.0277 34 1 -0.3634 -0.8897 0.5143 35 1 -0.3634 0.8902 0.5134 36 1 5.7933 -1.2137 0.0014 37 1 5.3207 -3.5860 0.0023 38 1 4.8928 -5.3331 0.0006 39 1 2.7440 -8.1843 1.6302 40 1 3.8333 -6.8683 2.1757 41 1 3.4252 -10.2091 0.8861 42 1 5.1321 -10.7378 0.7536 43 1 3.5141 -9.3809 -1.2755 44 1 5.2216 -9.9070 -1.4095 45 1 7.5344 -8.6312 3.8283 46 1 1.0893 -2.8960 -0.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097515231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:34 Heat of formation + Delta-G solvation = 79.416533 kcal Electronic energy + Delta-G solvation = -29250.067546 eV Core-core repulsion = 25334.317623 eV Total energy + Delta-G solvation = -3915.749923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.46750 -41.22905 -39.93754 -37.73511 -35.28233 -34.36753 -34.14263 -31.96433 -31.27211 -30.90313 -30.35789 -29.33025 -27.91515 -26.10750 -25.21838 -24.02492 -22.63664 -21.48685 -21.31285 -20.95016 -20.27680 -18.80957 -18.77725 -18.54742 -17.40460 -17.18193 -16.72142 -16.31625 -15.96071 -15.85163 -15.48051 -15.28207 -15.07263 -14.97487 -14.59211 -14.15616 -13.90068 -13.82110 -13.68075 -13.60619 -13.14151 -12.91698 -12.86904 -12.75299 -12.71725 -12.59142 -12.53214 -12.04698 -11.91899 -11.83921 -11.67036 -11.40669 -11.21660 -11.18937 -10.91269 -10.88523 -10.66665 -9.99877 -9.83555 -8.82609 -8.66106 -7.71730 -5.11099 -0.54822 0.34729 1.25230 1.51873 1.51971 1.59854 1.67735 1.97311 2.34072 2.53743 2.89050 3.16668 3.41918 3.44573 3.49734 3.84108 3.88053 4.00877 4.05338 4.13224 4.23558 4.32044 4.39962 4.47967 4.51009 4.54141 4.67986 4.69892 4.71687 4.75522 4.87341 4.95823 5.06758 5.09160 5.13687 5.21206 5.23601 5.31034 5.32236 5.39576 5.43456 5.56306 5.64299 5.68274 5.78994 5.94351 6.14825 6.31980 6.46983 6.70882 7.10342 7.32855 7.77057 8.63150 9.35515 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.003090 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.057263 B = 9060.499344 C =10607.316612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.163 3.837 3 N -0.409 5.409 4 H 0.460 0.540 5 N -0.343 5.343 6 C 0.107 3.893 7 C -0.124 4.124 8 C -0.048 4.048 9 C -0.200 4.200 10 C 0.560 3.440 11 O -0.586 6.586 12 N -0.702 5.702 13 C 0.140 3.860 14 H 0.089 0.911 15 C -0.131 4.131 16 C 0.139 3.861 17 H 0.115 0.885 18 C -0.132 4.132 19 C -0.118 4.118 20 C 0.125 3.875 21 H 0.101 0.899 22 N -0.610 5.610 23 C -0.212 4.212 24 H 0.086 0.914 25 C -0.067 4.067 26 N -0.948 5.948 27 Si 0.971 3.029 28 H -0.291 1.291 29 H -0.302 1.302 30 H -0.271 1.271 31 C 0.049 3.951 32 C -0.250 4.250 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.404 0.596 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.244 0.756 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.436 16.593 -8.310 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.021 3.979 3 N -0.111 5.111 4 H 0.309 0.691 5 N -0.171 5.171 6 C -0.047 4.047 7 C -0.145 4.145 8 C -0.070 4.070 9 C -0.205 4.205 10 C 0.350 3.650 11 O -0.469 6.469 12 N -0.350 5.350 13 C 0.034 3.966 14 H 0.107 0.893 15 C -0.172 4.172 16 C 0.033 3.967 17 H 0.132 0.868 18 C -0.171 4.171 19 C -0.158 4.158 20 C 0.018 3.982 21 H 0.118 0.882 22 N -0.332 5.332 23 C -0.341 4.341 24 H 0.103 0.897 25 C -0.259 4.259 26 N -0.598 5.598 27 Si 0.802 3.198 28 H -0.218 1.218 29 H -0.229 1.229 30 H -0.196 1.196 31 C 0.028 3.972 32 C -0.260 4.260 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.241 0.759 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.181 17.448 -8.168 23.922 hybrid contribution 1.264 -0.163 0.675 1.443 sum -12.917 17.285 -7.493 22.842 Atomic orbital electron populations 1.20891 0.82323 1.06572 1.06023 1.22001 0.96202 0.85859 0.93876 1.46316 1.03770 1.09810 1.51228 0.69124 1.77601 0.94701 1.11949 1.32813 1.21243 0.94958 0.91318 0.97217 1.19869 0.97622 0.90617 1.06426 1.20769 0.95523 0.95619 0.95125 1.19434 0.94648 0.91942 1.14441 1.18429 0.84432 0.86783 0.75353 1.90682 1.23131 1.79699 1.53379 1.45884 1.09327 1.06609 1.73218 1.22534 0.98808 0.78934 0.96349 0.89278 1.23383 0.98766 0.99072 0.95947 1.23782 0.86268 0.90003 0.96649 0.86802 1.23117 0.99569 0.98071 0.96360 1.22810 1.00831 0.95739 0.96374 1.23374 0.89157 0.95023 0.90613 0.88156 1.46729 1.07755 1.68629 1.10066 1.19356 0.86292 1.31128 0.97300 0.89668 1.25393 1.01551 1.02674 0.96330 1.69719 1.36263 1.49816 1.03978 0.85164 0.80590 0.76800 0.77287 1.21802 1.22949 1.19609 1.20729 0.99001 0.89599 0.87904 1.19489 0.92787 0.94102 1.19605 0.87060 0.88354 0.87256 0.83920 0.84694 0.75949 0.91442 0.94804 0.91170 0.94321 0.89986 0.92202 0.94616 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.44 71.24 0.74 0.27 16 2 C 0.16 2.39 7.28 42.33 0.31 2.69 16 3 N -0.41 -6.06 7.17 -46.73 -0.34 -6.39 16 4 H 0.46 2.77 8.96 -213.43 -1.91 0.85 16 5 N -0.34 -8.40 12.69 -48.54 -0.62 -9.01 16 6 C 0.11 2.85 7.49 42.27 0.32 3.17 16 7 C -0.12 -3.31 10.06 22.34 0.22 -3.09 16 8 C -0.05 -1.32 9.39 22.25 0.21 -1.11 16 9 C -0.20 -5.99 5.86 -20.15 -0.12 -6.11 16 10 C 0.56 19.58 7.75 86.69 0.67 20.25 16 11 O -0.59 -23.13 15.91 -4.03 -0.06 -23.19 16 12 N -0.70 -24.63 5.04 -437.05 -2.20 -26.83 16 13 C 0.14 5.15 2.84 46.83 0.13 5.29 16 14 H 0.09 3.17 7.26 -2.38 -0.02 3.16 16 15 C -0.13 -5.42 6.28 32.43 0.20 -5.22 16 16 C 0.14 6.43 4.72 46.60 0.22 6.65 16 17 H 0.11 6.23 5.52 -2.38 -0.01 6.21 16 18 C -0.13 -5.10 6.50 32.57 0.21 -4.89 16 19 C -0.12 -4.01 6.46 32.21 0.21 -3.80 16 20 C 0.13 4.70 5.01 46.23 0.23 4.93 16 21 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 22 N -0.61 -28.72 2.97 -613.33 -1.82 -30.54 16 23 C -0.21 -11.02 10.59 84.03 0.89 -10.13 16 24 H 0.09 4.20 7.83 -2.91 -0.02 4.18 16 25 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 26 N -0.95 -54.95 10.47 21.65 0.23 -54.73 16 27 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 28 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 29 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 30 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 31 C 0.05 1.27 9.64 22.84 0.22 1.49 16 32 C -0.25 -5.83 6.25 -20.26 -0.13 -5.95 16 33 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.14 3.55 6.27 -2.91 -0.02 3.54 16 38 H 0.40 13.84 6.59 -92.71 -0.61 13.23 16 39 H 0.07 2.55 7.88 -2.39 -0.02 2.53 16 40 H 0.03 1.55 8.00 -2.39 -0.02 1.53 16 41 H 0.07 2.36 7.88 -2.39 -0.02 2.34 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 43 H 0.08 2.32 7.85 -2.38 -0.02 2.31 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.24 13.99 8.31 -92.70 -0.77 13.22 16 46 H 0.15 3.43 7.58 -2.91 -0.02 3.40 16 Total: -1.00 -73.27 374.00 0.75 -72.52 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -1.48 Total: 30.12 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.01 Total: 1.26 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -4.75 Total: -127.50 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -73.27 0.75 -72.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097515231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.937 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds