Wall clock time and date at job start Tue Mar 31 2020 23:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30845 * 119.18823 * 2 1 4 4 C 1.33821 * 121.80663 * 180.28227 * 3 2 1 5 5 N 1.33687 * 120.61190 * 179.97438 * 4 3 2 6 6 C 1.31147 * 121.48843 * 180.02562 * 5 4 3 7 7 C 1.39263 * 121.85351 * 0.02562 * 6 5 4 8 8 C 1.36651 * 119.79268 * 359.95568 * 7 6 5 9 9 C 1.40775 * 118.11598 * 0.04357 * 8 7 6 10 10 C 1.40370 * 121.33347 * 179.97438 * 9 8 7 11 11 C 1.39123 * 117.91733 * 180.02562 * 10 9 8 12 12 C 1.47754 * 120.32541 * 180.02562 * 11 10 9 13 13 O 1.21562 * 120.00379 * 229.52212 * 12 11 10 14 14 N 1.34784 * 120.00073 * 49.51357 * 12 11 10 15 15 C 1.47081 * 120.87751 * 5.47332 * 14 12 11 16 16 C 1.53696 * 108.27319 * 128.75079 * 15 14 12 17 17 N 1.46896 * 109.26109 * 54.08060 * 16 15 14 18 18 C 1.46893 * 111.00272 * 172.60460 * 17 16 15 19 19 C 1.50695 * 109.47270 * 55.27494 * 18 17 16 20 20 H 1.08001 * 119.99970 * 5.25593 * 19 18 17 21 21 C 1.37880 * 120.00399 * 185.24867 * 19 18 17 22 22 N 1.31512 * 120.00236 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99627 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47069 * 89.99886 * 23 21 19 25 25 H 1.48500 * 109.46674 * 209.99362 * 23 21 19 26 26 H 1.48497 * 109.47015 * 329.99435 * 23 21 19 27 27 C 1.46895 * 111.26937 * 296.75986 * 17 16 15 28 28 C 1.47080 * 120.88156 * 185.74584 * 14 12 11 29 29 H 1.09001 * 109.47445 * 263.75796 * 1 2 3 30 30 H 1.08996 * 109.47256 * 23.75962 * 1 2 3 31 31 H 1.09005 * 109.47212 * 143.75958 * 1 2 3 32 32 H 1.08003 * 119.07645 * 179.97438 * 6 5 4 33 33 H 1.07996 * 120.10383 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.94341 * 179.97438 * 8 7 6 35 35 H 1.07999 * 121.04107 * 359.97438 * 10 9 8 36 36 H 1.08991 * 109.62785 * 248.51757 * 15 14 12 37 37 H 1.08999 * 109.62898 * 9.10357 * 15 14 12 38 38 H 1.08999 * 109.64770 * 294.07577 * 16 15 14 39 39 H 1.09004 * 109.42172 * 173.94533 * 16 15 14 40 40 H 1.09005 * 109.47117 * 175.27771 * 18 17 16 41 41 H 1.08996 * 109.47326 * 295.27157 * 18 17 16 42 42 H 0.96995 * 120.00207 * 180.02562 * 22 21 19 43 43 H 1.09009 * 109.48860 * 303.14024 * 27 17 16 44 44 H 1.08999 * 109.51832 * 183.07880 * 27 17 16 45 45 H 1.08999 * 109.62602 * 350.89803 * 28 14 12 46 46 H 1.08997 * 109.62441 * 111.48269 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1452 1.1423 0.0000 4 6 3.4820 1.2034 -0.0056 5 7 4.1095 2.3839 -0.0060 6 6 5.4185 2.4639 -0.0119 7 6 6.2242 1.3280 -0.0187 8 6 5.6497 0.0881 -0.0183 9 6 4.2442 0.0081 -0.0119 10 6 3.5836 -1.2304 -0.0117 11 6 2.1924 -1.2266 -0.0057 12 6 1.4428 -2.4999 -0.0046 13 8 0.5421 -2.6757 -0.8018 14 7 1.7578 -3.4666 0.8803 15 6 2.7613 -3.2315 1.9296 16 6 2.1485 -3.6323 3.2809 17 7 1.6498 -5.0115 3.1968 18 6 1.2152 -5.4954 4.5139 19 6 0.1923 -4.5474 5.0849 20 1 -0.1680 -3.7203 4.4913 21 6 -0.2837 -4.7361 6.3651 22 7 -1.1760 -3.9085 6.8635 23 14 0.3399 -6.1665 7.3920 24 1 1.5330 -5.7376 8.1653 25 1 -0.7257 -6.6049 8.3287 26 1 0.7082 -7.2939 6.4984 27 6 0.5681 -5.1278 2.2099 28 6 1.1115 -4.7863 0.8184 29 1 -0.3634 -0.1117 1.0216 30 1 -0.3633 0.9405 -0.4140 31 1 -0.3634 -0.8289 -0.6075 32 1 5.8848 3.4380 -0.0124 33 1 7.2996 1.4267 -0.0239 34 1 6.2567 -0.8052 -0.0239 35 1 4.1379 -2.1573 -0.0168 36 1 3.6464 -3.8361 1.7318 37 1 3.0319 -2.1758 1.9475 38 1 1.3240 -2.9616 3.5228 39 1 2.9103 -3.5678 4.0578 40 1 0.7736 -6.4865 4.4093 41 1 2.0740 -5.5492 5.1828 42 1 -1.5105 -4.0410 7.7643 43 1 -0.2345 -4.4362 2.4667 44 1 0.1832 -6.1476 2.2099 45 1 0.2910 -4.7589 0.1014 46 1 1.8412 -5.5374 0.5158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149555990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:42 Heat of formation + Delta-G solvation = 55.872670 kcal Electronic energy + Delta-G solvation = -29538.231360 eV Core-core repulsion = 25621.460499 eV Total energy + Delta-G solvation = -3916.770862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61063 -40.10684 -38.26049 -37.43216 -34.89725 -34.24534 -32.43409 -32.31329 -31.74189 -30.57832 -28.84534 -28.25892 -26.07994 -24.94210 -23.56782 -23.41219 -22.54856 -22.29780 -20.91717 -19.53665 -18.70297 -17.56789 -17.41072 -16.83852 -16.59937 -15.81663 -15.60620 -15.25783 -14.85753 -14.69263 -14.63879 -14.52958 -14.17029 -13.94793 -13.62425 -13.52309 -13.43612 -13.17583 -12.59333 -12.56749 -12.40780 -12.39763 -12.16500 -11.75271 -11.44838 -11.38760 -11.25602 -11.09626 -10.77762 -10.71677 -10.57268 -10.35202 -10.12082 -9.95379 -9.61422 -9.27454 -9.10940 -9.07654 -8.69063 -8.60498 -7.41129 -6.19378 -4.20938 -0.19168 0.23475 1.53154 2.22988 2.69613 2.99771 3.20273 3.29016 3.31262 3.42484 3.80150 4.03790 4.19800 4.27582 4.30703 4.31208 4.43019 4.57800 4.68776 4.82663 4.98892 5.12235 5.13085 5.23484 5.32271 5.35228 5.39741 5.47548 5.55234 5.63154 5.65634 5.70771 5.77493 5.81968 5.82868 5.94695 6.10781 6.23355 6.34931 6.50885 6.54579 6.59664 6.79720 6.92462 7.15009 7.32976 7.43458 7.85121 7.87361 7.91431 8.05488 8.33151 8.81693 9.42358 10.93323 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.002976 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.172413 B = 9406.178992 C = 9857.604816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.236 3.764 3 N -0.470 5.470 4 C 0.325 3.675 5 N -0.469 5.469 6 C 0.165 3.835 7 C -0.188 4.188 8 C -0.032 4.032 9 C -0.169 4.169 10 C -0.004 4.004 11 C -0.177 4.177 12 C 0.567 3.433 13 O -0.532 6.532 14 N -0.596 5.596 15 C 0.104 3.896 16 C 0.049 3.951 17 N -0.534 5.534 18 C 0.156 3.844 19 C -0.557 4.557 20 H 0.074 0.926 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 C 0.046 3.954 28 C 0.117 3.883 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.490 5.896 -14.751 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.080 3.920 3 N -0.180 5.180 4 C 0.087 3.913 5 N -0.178 5.178 6 C -0.011 4.011 7 C -0.208 4.208 8 C -0.058 4.058 9 C -0.174 4.174 10 C -0.031 4.031 11 C -0.182 4.182 12 C 0.354 3.646 13 O -0.410 6.410 14 N -0.328 5.328 15 C -0.019 4.019 16 C -0.080 4.080 17 N -0.258 5.258 18 C 0.030 3.970 19 C -0.595 4.595 20 H 0.092 0.908 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 C -0.083 4.083 28 C -0.005 4.005 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.184 0.816 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.272 7.083 -15.148 21.985 hybrid contribution 0.722 -1.618 1.221 2.152 sum 14.994 5.465 -13.927 21.181 Atomic orbital electron populations 1.21185 0.87172 1.05552 1.04659 1.21563 0.97653 0.85565 0.87236 1.67435 1.07485 1.27952 1.15079 1.19419 0.89847 0.87783 0.94269 1.67639 1.10827 1.26103 1.13256 1.23149 0.88288 0.99408 0.90232 1.21970 1.02086 0.93247 1.03494 1.21527 0.92536 0.99057 0.92723 1.19510 0.95716 0.95179 1.06999 1.21945 0.92938 0.97549 0.90653 1.20867 0.94409 0.95582 1.07375 1.17913 0.82949 0.82646 0.81093 1.90740 1.30293 1.80011 1.39957 1.48128 1.41211 1.13406 1.30099 1.22266 0.91050 1.00854 0.87720 1.22330 0.99997 0.91465 0.94187 1.62417 1.34006 1.19689 1.09644 1.20175 0.95182 0.96003 0.85668 1.21652 1.24037 1.13579 1.00263 0.90812 1.24979 0.94381 0.95928 0.97679 1.69921 1.29776 1.37033 1.16577 0.86784 0.78725 0.83328 0.80474 1.20163 1.21257 1.18866 1.22300 0.93817 1.01853 0.90347 1.21890 0.97961 0.82052 0.98616 0.89295 0.89704 0.87570 0.81556 0.83791 0.83763 0.83188 0.90730 0.90374 0.92840 0.90168 0.95308 0.95451 0.92554 0.93339 0.90164 0.88978 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.62 36.01 0.35 -1.38 16 2 C 0.24 3.44 6.82 -82.15 -0.56 2.88 16 3 N -0.47 -7.33 10.29 -8.55 -0.09 -7.41 16 4 C 0.33 4.59 7.62 -157.70 -1.20 3.39 16 5 N -0.47 -6.14 10.42 -12.57 -0.13 -6.27 16 6 C 0.17 1.39 11.14 -17.46 -0.19 1.19 16 7 C -0.19 -1.21 10.04 -39.77 -0.40 -1.61 16 8 C -0.03 -0.24 9.90 -39.20 -0.39 -0.63 16 9 C -0.17 -1.88 5.74 -106.78 -0.61 -2.50 16 10 C 0.00 -0.04 7.53 -38.45 -0.29 -0.33 16 11 C -0.18 -2.38 4.79 -104.82 -0.50 -2.89 16 12 C 0.57 8.44 6.72 -12.37 -0.08 8.36 16 13 O -0.53 -9.12 14.27 5.31 0.08 -9.05 16 14 N -0.60 -8.52 3.00 -173.33 -0.52 -9.04 16 15 C 0.10 1.37 5.49 -3.36 -0.02 1.35 16 16 C 0.05 0.86 5.09 -3.46 -0.02 0.84 16 17 N -0.53 -9.99 4.83 -235.48 -1.14 -11.13 16 18 C 0.16 3.49 4.21 -4.98 -0.02 3.47 16 19 C -0.56 -14.79 8.32 -34.44 -0.29 -15.07 16 20 H 0.07 2.16 6.14 -52.49 -0.32 1.84 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -26.64 13.96 55.43 0.77 -25.86 16 23 Si 0.88 20.63 27.37 -169.99 -4.65 15.97 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.26 -5.92 6.70 56.52 0.38 -5.54 16 27 C 0.05 0.80 5.30 -3.70 -0.02 0.78 16 28 C 0.12 1.68 6.61 -3.60 -0.02 1.66 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.11 1.50 5.68 -51.93 -0.30 1.21 16 32 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.15 1.20 7.47 -52.49 -0.39 0.80 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.95 5.36 -51.93 -0.28 0.67 16 38 H 0.05 1.11 6.58 -51.93 -0.34 0.76 16 39 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 40 H 0.03 0.65 7.41 -51.93 -0.38 0.27 16 41 H 0.03 0.61 7.28 -51.93 -0.38 0.23 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.05 1.00 7.17 -51.92 -0.37 0.62 16 44 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 45 H 0.09 1.34 7.04 -51.93 -0.37 0.97 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -33.89 366.74 -10.61 -44.50 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.08 Total: 1.31 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -4.37 Total: 1.45 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -1.10 Total: -59.72 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.65 Total: 15.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.89 -10.61 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149555990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.372 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds