Wall clock time and date at job start Tue Mar 31 2020 23:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48504 * 109.46899 * 269.99967 * 3 2 1 5 5 H 1.48503 * 109.47120 * 29.99977 * 3 2 1 6 6 H 1.48495 * 109.47043 * 149.99788 * 3 2 1 7 7 C 1.38810 * 119.99539 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99833 * 164.51863 * 7 2 1 9 9 N 1.36937 * 120.00392 * 344.51832 * 7 2 1 10 10 C 1.47008 * 121.37213 * 335.96591 * 9 7 2 11 11 C 1.50316 * 109.16693 * 222.96746 * 10 9 7 12 12 C 1.29455 * 123.65216 * 349.02818 * 11 10 9 13 13 C 1.50703 * 117.69163 * 180.85417 * 12 11 10 14 14 C 1.53001 * 109.47063 * 95.00494 * 13 12 11 15 15 N 1.46498 * 109.47225 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00083 * 179.97438 * 15 14 13 17 17 O 1.21592 * 120.00140 * 0.02562 * 16 15 14 18 18 C 1.47589 * 120.00353 * 180.02562 * 16 15 14 19 19 C 1.40087 * 120.35242 * 359.97438 * 18 16 15 20 20 N 1.31164 * 121.11385 * 180.02562 * 19 18 16 21 21 C 1.33361 * 121.68111 * 359.97438 * 20 19 18 22 22 C 1.41848 * 133.17012 * 179.97438 * 21 20 19 23 23 C 1.34461 * 107.95914 * 180.02562 * 22 21 20 24 24 N 1.36543 * 109.71353 * 359.97438 * 23 22 21 25 25 H 0.96993 * 125.59434 * 180.02562 * 24 23 22 26 26 C 1.37856 * 108.80088 * 0.02562 * 24 23 22 27 27 C 1.38730 * 133.56341 * 179.97438 * 26 24 23 28 28 C 1.49965 * 124.61279 * 1.13606 * 12 11 10 29 29 C 1.47334 * 121.37626 * 155.99491 * 9 7 2 30 30 H 0.97001 * 120.00016 * 359.97438 * 1 2 3 31 31 H 1.09010 * 109.51730 * 103.06555 * 10 9 7 32 32 H 1.08996 * 109.52660 * 342.88200 * 10 9 7 33 33 H 1.07997 * 118.17346 * 169.00036 * 11 10 9 34 34 H 1.08997 * 109.47584 * 335.00234 * 13 12 11 35 35 H 1.09001 * 109.46743 * 215.00178 * 13 12 11 36 36 H 1.08997 * 109.47133 * 59.99463 * 14 13 12 37 37 H 1.08998 * 109.46596 * 299.99380 * 14 13 12 38 38 H 0.97002 * 119.99560 * 359.97438 * 15 14 13 39 39 H 1.07996 * 119.44039 * 0.04394 * 19 18 16 40 40 H 1.07998 * 126.02422 * 0.03884 * 22 21 20 41 41 H 1.07997 * 125.14016 * 180.26429 * 23 22 21 42 42 H 1.08007 * 120.91030 * 0.03997 * 27 26 24 43 43 H 1.09005 * 109.31402 * 101.00456 * 28 12 11 44 44 H 1.09001 * 109.31551 * 220.43477 * 28 12 11 45 45 H 1.09003 * 109.77646 * 237.78514 * 29 9 7 46 46 H 1.08996 * 109.78112 * 358.59578 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0608 -1.2193 -0.2491 9 7 1.3627 -2.3664 0.3176 10 6 0.1443 -2.3650 1.1402 11 6 0.2244 -3.4821 2.1428 12 6 1.1201 -4.4160 2.1062 13 6 1.0636 -5.4827 3.1693 14 6 0.2868 -6.6898 2.6397 15 7 0.2323 -7.7270 3.6729 16 6 -0.4063 -8.8884 3.4288 17 8 -0.9369 -9.0756 2.3510 18 6 -0.4617 -9.9331 4.4699 19 6 0.1475 -9.7255 5.7142 20 7 0.1078 -10.6439 6.6498 21 6 -0.5109 -11.8101 6.4609 22 6 -0.7013 -12.9517 7.2809 23 6 -1.4091 -13.8535 6.5782 24 7 -1.6900 -13.3541 5.3389 25 1 -2.1893 -13.8127 4.6452 26 6 -1.1474 -12.0910 5.2354 27 6 -1.1239 -11.1404 4.2253 28 6 2.2136 -4.5080 1.0840 29 6 1.8588 -3.6722 -0.1510 30 1 -0.4850 0.8401 0.0004 31 1 -0.7267 -2.5109 0.5012 32 1 0.0584 -1.4122 1.6624 33 1 -0.5056 -3.5066 2.9383 34 1 0.5633 -5.0882 4.0536 35 1 2.0764 -5.7888 3.4310 36 1 0.7871 -7.0843 1.7553 37 1 -0.7261 -6.3837 2.3780 38 1 0.6560 -7.5778 4.5327 39 1 0.6581 -8.7935 5.9063 40 1 -0.3414 -13.0749 8.2917 41 1 -1.7137 -14.8240 6.9411 42 1 -1.6034 -11.3277 3.2758 43 1 3.1439 -4.1407 1.5172 44 1 2.3434 -5.5489 0.7876 45 1 1.0844 -4.1744 -0.7309 46 1 2.7473 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160455958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:21 Heat of formation + Delta-G solvation = 72.779933 kcal Electronic energy + Delta-G solvation = -27476.872369 eV Core-core repulsion = 23560.834661 eV Total energy + Delta-G solvation = -3916.037708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20209 -39.99710 -38.08145 -37.72926 -35.49277 -33.61528 -33.29799 -31.47888 -30.63006 -30.26708 -29.70489 -28.45689 -25.55686 -24.21089 -23.96478 -22.89705 -22.36806 -21.35973 -21.03901 -20.68342 -18.91456 -17.67188 -17.56367 -17.04817 -16.51942 -15.89710 -15.75335 -15.39539 -15.24599 -14.94373 -14.60087 -14.10461 -14.01157 -13.82029 -13.65582 -13.54850 -13.35596 -13.30069 -12.92478 -12.88247 -12.58767 -12.19280 -11.97170 -11.56214 -11.39591 -11.00054 -10.89375 -10.77476 -10.69743 -10.51800 -10.29425 -10.19117 -9.78869 -9.68627 -9.51201 -9.22145 -8.94271 -8.62682 -8.60433 -7.89545 -6.69346 -5.75986 -3.14474 0.17491 0.84904 1.99249 2.38852 2.77950 2.83046 3.14106 3.39850 3.46522 3.48939 3.60302 3.77673 4.19703 4.40671 4.48144 4.52338 4.52810 4.73103 4.85373 5.10203 5.13287 5.22931 5.29416 5.42747 5.46221 5.58342 5.60702 5.67045 5.81852 5.85920 5.93926 6.03134 6.06770 6.17256 6.24050 6.31879 6.38564 6.42522 6.58803 6.81256 6.81986 6.93952 7.26296 7.29340 7.36784 7.44331 7.57113 7.77913 7.91387 8.01197 8.42188 9.23629 9.86654 10.45347 11.34410 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.001622 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.494476 B =17259.347393 C =17452.761125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.093 4.093 14 C 0.124 3.876 15 N -0.722 5.722 16 C 0.564 3.436 17 O -0.537 6.537 18 C -0.177 4.177 19 C 0.133 3.867 20 N -0.454 5.454 21 C 0.113 3.887 22 C -0.199 4.199 23 C 0.081 3.919 24 N -0.580 5.580 25 H 0.423 0.577 26 C 0.024 3.976 27 C -0.012 4.012 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.399 0.601 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.182 0.818 42 H 0.146 0.854 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -28.244 14.554 31.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.130 4.130 14 C 0.002 3.998 15 N -0.373 5.373 16 C 0.350 3.650 17 O -0.415 6.415 18 C -0.184 4.184 19 C -0.038 4.038 20 N -0.162 5.162 21 C -0.018 4.018 22 C -0.225 4.225 23 C -0.050 4.050 24 N -0.183 5.183 25 H 0.261 0.739 26 C -0.085 4.085 27 C -0.040 4.040 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.199 0.801 42 H 0.164 0.836 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.960 -28.181 14.506 31.833 hybrid contribution -0.099 0.563 -0.598 0.827 sum -3.058 -27.618 13.908 31.073 Atomic orbital electron populations 1.70019 1.05169 1.25424 1.54874 1.24984 0.95378 0.98252 1.01368 0.86268 0.79046 0.83654 0.77653 1.21469 1.21603 1.20576 1.19176 0.92190 0.84428 1.41639 0.91442 1.44129 1.29274 1.01133 1.57330 1.19706 0.88631 0.94781 0.89765 1.23123 0.96682 0.97344 0.99392 1.20221 0.99332 0.96594 0.98224 1.20923 1.00071 0.94086 0.97955 1.21496 1.01462 0.86532 0.90341 1.45994 1.56297 1.16355 1.18701 1.17870 0.78643 0.81723 0.86715 1.90806 1.45912 1.79683 1.25051 1.20621 1.04967 0.96001 0.96768 1.22765 0.95703 0.97613 0.87714 1.67182 1.16370 1.00362 1.32270 1.19200 0.97018 0.93303 0.92244 1.20613 1.07816 0.92545 1.01510 1.22103 0.99054 0.99721 0.84151 1.41775 1.48054 1.13486 1.14962 0.73864 1.19010 1.02973 0.88283 0.98229 1.20555 0.95737 0.90107 0.97646 1.20794 0.96565 0.99003 0.96659 1.20992 0.97304 0.87235 0.92853 0.93663 0.94433 0.89158 0.89038 0.91401 0.91329 0.91009 0.91012 0.76553 0.82188 0.82731 0.80075 0.83629 0.91896 0.92901 0.95808 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.50 11.08 55.49 0.61 -25.89 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 3 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.79 9.71 -15.06 -0.15 -6.93 16 8 H 0.07 1.83 7.88 -52.48 -0.41 1.41 16 9 N -0.60 -15.15 3.01 -173.56 -0.52 -15.67 16 10 C 0.20 4.74 5.23 -5.10 -0.03 4.72 16 11 C -0.15 -2.81 9.47 -35.78 -0.34 -3.15 16 12 C -0.14 -2.44 5.11 -100.99 -0.52 -2.96 16 13 C -0.09 -1.17 5.32 -27.88 -0.15 -1.32 16 14 C 0.12 1.57 5.66 -4.04 -0.02 1.55 16 15 N -0.72 -7.63 5.51 -61.33 -0.34 -7.96 16 16 C 0.56 6.99 7.77 -12.45 -0.10 6.89 16 17 O -0.54 -8.61 16.40 5.29 0.09 -8.53 16 18 C -0.18 -1.85 5.89 -104.79 -0.62 -2.47 16 19 C 0.13 1.26 10.69 -17.14 -0.18 1.08 16 20 N -0.45 -4.99 10.40 -10.71 -0.11 -5.10 16 21 C 0.11 1.13 7.32 -84.81 -0.62 0.51 16 22 C -0.20 -1.40 10.84 -39.54 -0.43 -1.83 16 23 C 0.08 0.34 11.82 -16.79 -0.20 0.14 16 24 N -0.58 -2.96 6.14 -10.66 -0.07 -3.03 16 25 H 0.42 0.87 8.96 -40.82 -0.37 0.51 16 26 C 0.02 0.21 7.27 -83.96 -0.61 -0.40 16 27 C -0.01 -0.11 9.72 -38.80 -0.38 -0.49 16 28 C -0.09 -1.61 5.95 -28.09 -0.17 -1.77 16 29 C 0.14 3.03 6.59 -3.44 -0.02 3.01 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 33 H 0.09 1.56 7.73 -52.49 -0.41 1.16 16 34 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 35 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 3.02 6.51 -40.82 -0.27 2.76 16 39 H 0.16 1.05 6.38 -52.49 -0.34 0.72 16 40 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.18 0.00 8.06 -52.49 -0.42 -0.43 16 42 H 0.15 1.31 7.72 -52.48 -0.41 0.90 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -35.40 381.44 -10.50 -45.90 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.28 Total: 1.28 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -4.61 Total: -3.57 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.42 Total: -57.64 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.40 -10.50 -45.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160455958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.679 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds