Wall clock time and date at job start Tue Mar 31 2020 23:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86809 * 119.99700 * 2 1 4 4 H 1.48498 * 109.46868 * 274.45340 * 3 2 1 5 5 H 1.48497 * 109.46789 * 34.45357 * 3 2 1 6 6 H 1.48496 * 109.46881 * 154.45323 * 3 2 1 7 7 C 1.38810 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00004 * 164.49626 * 7 2 1 9 9 N 1.36937 * 120.00162 * 344.49723 * 7 2 1 10 10 C 1.47007 * 121.37232 * 335.97753 * 9 7 2 11 11 C 1.50322 * 109.16442 * 222.96830 * 10 9 7 12 12 C 1.29448 * 123.65364 * 349.01813 * 11 10 9 13 13 C 1.50699 * 117.69703 * 180.85868 * 12 11 10 14 14 C 1.52996 * 109.47026 * 95.00471 * 13 12 11 15 15 N 1.46503 * 109.47174 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99988 * 180.02562 * 15 14 13 17 17 O 1.21612 * 120.00191 * 359.97438 * 16 15 14 18 18 C 1.47380 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.39253 * 120.84144 * 0.02562 * 18 16 15 20 20 N 1.31907 * 120.97491 * 179.97438 * 19 18 16 21 21 C 1.31922 * 122.71550 * 359.97438 * 20 19 18 22 22 C 1.38693 * 120.79654 * 359.97438 * 21 20 19 23 23 N 1.37747 * 134.30766 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.56140 * 0.04353 * 23 22 21 25 25 C 1.36558 * 108.88506 * 180.02562 * 23 22 21 26 26 C 1.34651 * 109.65902 * 359.97438 * 25 23 22 27 27 C 1.40989 * 118.84139 * 0.02696 * 22 21 20 28 28 C 1.49970 * 124.61146 * 1.14805 * 12 11 10 29 29 C 1.47332 * 121.37671 * 156.00102 * 9 7 2 30 30 H 0.96995 * 120.00536 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.52298 * 103.06341 * 10 9 7 32 32 H 1.09000 * 109.52790 * 342.87555 * 10 9 7 33 33 H 1.08003 * 118.17322 * 169.00211 * 11 10 9 34 34 H 1.08997 * 109.47230 * 335.00505 * 13 12 11 35 35 H 1.09001 * 109.47230 * 215.00708 * 13 12 11 36 36 H 1.08997 * 109.47088 * 59.99947 * 14 13 12 37 37 H 1.09001 * 109.47309 * 300.00188 * 14 13 12 38 38 H 0.97003 * 119.99813 * 359.97438 * 15 14 13 39 39 H 1.08007 * 119.51037 * 0.24788 * 19 18 16 40 40 H 1.07999 * 119.60087 * 180.02562 * 21 20 19 41 41 H 1.07999 * 125.17330 * 180.02562 * 25 23 22 42 42 H 1.07994 * 126.09216 * 180.02562 * 26 25 23 43 43 H 1.09002 * 109.31765 * 101.00273 * 28 12 11 44 44 H 1.08999 * 109.31582 * 220.43030 * 28 12 11 45 45 H 1.09002 * 109.77746 * 237.79211 * 29 9 7 46 46 H 1.08996 * 109.78055 * 358.59619 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4034 2.1008 -1.3958 5 1 1.4977 2.6237 0.7921 6 1 3.5915 1.4150 0.6038 7 6 2.0103 -1.2021 0.0005 8 1 3.0609 -1.2191 -0.2495 9 7 1.3631 -2.3663 0.3180 10 6 0.1448 -2.3649 1.1408 11 6 0.2253 -3.4817 2.1437 12 6 1.1210 -4.4156 2.1071 13 6 1.0649 -5.4820 3.1704 14 6 0.2881 -6.6893 2.6413 15 7 0.2330 -7.7258 3.6752 16 6 -0.4049 -8.8877 3.4312 17 8 -0.9352 -9.0755 2.3531 18 6 -0.4598 -9.9306 4.4712 19 6 0.1408 -9.7338 5.7120 20 7 0.0929 -10.6652 6.6448 21 6 -0.5161 -11.8218 6.4668 22 6 -1.1461 -12.1154 5.2666 23 7 -1.8457 -13.2009 4.7875 24 1 -2.0229 -14.0189 5.2777 25 6 -2.2494 -12.9377 3.5098 26 6 -1.8314 -11.7103 3.1464 27 6 -1.1253 -11.1548 4.2348 28 6 2.2144 -4.5076 1.0848 29 6 1.8592 -3.6721 -0.1504 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7263 -2.5111 0.5020 32 1 0.0589 -1.4119 1.6629 33 1 -0.5046 -3.5062 2.9394 34 1 0.5647 -5.0873 4.0548 35 1 2.0779 -5.7879 3.4320 36 1 0.7883 -7.0839 1.7570 37 1 -0.7248 -6.3833 2.3797 38 1 0.6563 -7.5761 4.5351 39 1 0.6497 -8.8030 5.9151 40 1 -0.5248 -12.5486 7.2656 41 1 -2.8182 -13.6111 2.8858 42 1 -2.0050 -11.2358 2.1920 43 1 3.1448 -4.1401 1.5178 44 1 2.3443 -5.5485 0.7886 45 1 1.0848 -4.1746 -0.7301 46 1 2.7476 -3.5300 -0.7657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160607144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:55 Heat of formation + Delta-G solvation = 49.922404 kcal Electronic energy + Delta-G solvation = -27792.573457 eV Core-core repulsion = 23875.544572 eV Total energy + Delta-G solvation = -3917.028885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.79404 -40.68745 -39.46027 -38.92376 -36.74695 -35.14240 -33.73398 -33.10041 -31.53730 -31.14544 -30.89425 -29.79410 -27.19850 -25.60799 -24.58717 -23.95648 -23.57609 -22.51095 -22.18134 -21.63193 -19.56333 -19.42077 -18.44451 -17.73599 -17.56661 -17.04902 -16.82739 -16.60179 -16.12707 -15.88455 -15.72948 -15.69607 -15.39426 -15.23291 -14.86596 -14.77195 -14.30521 -14.21003 -13.87675 -13.70238 -13.46003 -13.35072 -13.19492 -13.04207 -12.81245 -12.78200 -12.57093 -12.35771 -12.16892 -11.89184 -11.66996 -11.49154 -11.21796 -11.17174 -10.67798 -10.51799 -10.16221 -9.66697 -9.47792 -8.99708 -8.74423 -7.87475 -5.29561 -0.57918 0.37392 1.42388 1.46756 1.47879 1.58328 1.62659 1.90351 2.04617 2.15739 2.51514 2.90961 3.29192 3.35872 3.63207 3.68363 3.79085 3.88279 3.97850 4.05212 4.10543 4.13955 4.22449 4.31099 4.44692 4.56693 4.59877 4.67153 4.69577 4.77832 4.87738 4.92348 4.98717 5.08936 5.17728 5.19080 5.24826 5.38041 5.38666 5.42989 5.51210 5.55435 5.61425 5.81578 5.89186 6.29520 6.34264 6.50501 6.56532 6.89115 7.13650 7.18367 7.83845 8.38927 9.21237 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.001769 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.122085 B =15827.429767 C =16201.098875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.058 4.058 3 Si 0.972 3.028 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.206 3.794 11 C -0.175 4.175 12 C -0.119 4.119 13 C -0.079 4.079 14 C 0.134 3.866 15 N -0.711 5.711 16 C 0.559 3.441 17 O -0.574 6.574 18 C -0.174 4.174 19 C 0.107 3.893 20 N -0.497 5.497 21 C 0.152 3.848 22 C 0.008 3.992 23 N -0.555 5.555 24 H 0.444 0.556 25 C 0.108 3.892 26 C -0.245 4.245 27 C -0.050 4.050 28 C -0.087 4.087 29 C 0.135 3.865 30 H 0.249 0.751 31 H 0.002 0.998 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.414 0.586 39 H 0.180 0.820 40 H 0.196 0.804 41 H 0.223 0.777 42 H 0.136 0.864 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.017 0.983 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 -31.145 15.880 35.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.194 4.194 12 C -0.120 4.120 13 C -0.117 4.117 14 C 0.011 3.989 15 N -0.363 5.363 16 C 0.347 3.653 17 O -0.455 6.455 18 C -0.180 4.180 19 C -0.045 4.045 20 N -0.205 5.205 21 C -0.013 4.013 22 C -0.103 4.103 23 N -0.159 5.159 24 H 0.286 0.714 25 C -0.025 4.025 26 C -0.269 4.269 27 C -0.062 4.062 28 C -0.126 4.126 29 C 0.010 3.990 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.252 0.748 39 H 0.197 0.803 40 H 0.212 0.788 41 H 0.240 0.760 42 H 0.153 0.847 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.035 0.965 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.031 -31.012 15.964 34.939 hybrid contribution -0.363 1.128 -0.888 1.481 sum -2.394 -29.884 15.077 33.558 Atomic orbital electron populations 1.70199 1.06667 1.25766 1.56250 1.25813 0.96200 1.01558 1.01708 0.85192 0.78105 0.79387 0.77369 1.21287 1.21880 1.19305 1.19546 0.92579 0.85597 1.40962 0.91083 1.44428 1.29456 1.02080 1.57952 1.19352 0.87267 0.95272 0.89970 1.22826 0.99451 0.97186 0.99919 1.20562 0.97145 0.96198 0.98118 1.20818 1.01836 0.92306 0.96733 1.21199 1.00115 0.86969 0.90653 1.45808 1.56177 1.15470 1.18865 1.18273 0.77972 0.82195 0.86827 1.90748 1.47479 1.80427 1.26830 1.20360 1.05996 0.95096 0.96569 1.22933 0.95614 0.98713 0.87234 1.67692 1.18518 1.01911 1.32425 1.22561 0.90778 0.94346 0.93645 1.19422 1.03317 0.90389 0.97174 1.41798 1.45156 1.15777 1.13161 0.71388 1.22787 0.97705 0.96795 0.85196 1.20923 1.08103 0.97427 1.00481 1.18586 0.98527 0.93308 0.95777 1.20752 0.96803 1.00022 0.94993 1.21191 0.97036 0.86055 0.94757 0.94159 0.98053 0.92654 0.86907 0.89675 0.88702 0.92093 0.93120 0.74758 0.80336 0.78771 0.76030 0.84657 0.91195 0.89660 0.96460 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 11.08 21.65 0.24 -57.26 16 2 C -0.06 -3.36 5.01 84.86 0.43 -2.93 16 3 Si 0.97 45.97 29.58 68.60 2.03 48.00 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.26 -14.59 9.71 84.03 0.82 -13.78 16 8 H 0.07 3.89 7.88 -2.91 -0.02 3.86 16 9 N -0.62 -32.38 3.01 -703.03 -2.11 -34.49 16 10 C 0.21 10.58 5.23 85.42 0.45 11.03 16 11 C -0.17 -6.87 9.47 27.11 0.26 -6.61 16 12 C -0.12 -3.96 5.11 -15.13 -0.08 -4.04 16 13 C -0.08 -1.84 5.32 29.85 0.16 -1.68 16 14 C 0.13 3.37 5.66 86.38 0.49 3.86 16 15 N -0.71 -15.16 5.51 -466.41 -2.57 -17.73 16 16 C 0.56 15.10 7.77 86.65 0.67 15.77 16 17 O -0.57 -20.12 15.22 -4.07 -0.06 -20.18 16 18 C -0.17 -3.99 5.91 -19.87 -0.12 -4.11 16 19 C 0.11 1.91 10.71 84.93 0.91 2.82 16 20 N -0.50 -8.60 10.30 -194.56 -2.00 -10.60 16 21 C 0.15 1.95 11.21 84.79 0.95 2.90 16 22 C 0.01 0.11 7.31 39.00 0.29 0.40 16 23 N -0.55 -3.96 6.13 -187.55 -1.15 -5.11 16 24 H 0.44 -0.63 8.96 -92.71 -0.83 -1.46 16 25 C 0.11 1.02 11.84 83.13 0.98 2.01 16 26 C -0.24 -4.94 10.09 22.16 0.22 -4.72 16 27 C -0.05 -1.11 6.04 -21.14 -0.13 -1.23 16 28 C -0.09 -2.95 5.95 29.72 0.18 -2.77 16 29 C 0.13 5.80 6.59 86.32 0.57 6.37 16 30 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 32 H 0.06 3.16 6.41 -2.39 -0.02 3.15 16 33 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 34 H 0.08 1.76 7.78 -2.39 -0.02 1.74 16 35 H 0.09 1.80 8.11 -2.39 -0.02 1.78 16 36 H 0.06 1.67 8.11 -2.39 -0.02 1.65 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.41 5.88 6.55 -92.71 -0.61 5.27 16 39 H 0.18 2.12 6.42 -2.91 -0.02 2.10 16 40 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.22 0.05 8.06 -2.91 -0.02 0.02 16 42 H 0.14 3.34 7.19 -2.91 -0.02 3.32 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.09 2.39 8.10 -2.39 -0.02 2.37 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 2.46 7.96 -2.39 -0.02 2.44 16 Total: -1.00 -82.74 379.27 1.00 -81.74 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -0.41 Total: 12.36 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 7.04 Total: 3.28 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -7.60 Total: -125.19 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.06 Total: -20.18 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -82.74 1.00 -81.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160607144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.664 kcal (2) G-P(sol) polarization free energy of solvation -82.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds