Wall clock time and date at job start Tue Mar 31 2020 23:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00543 * 2 1 4 4 H 1.48507 * 109.47179 * 270.00075 * 3 2 1 5 5 H 1.48501 * 109.47307 * 29.99956 * 3 2 1 6 6 H 1.48499 * 109.47498 * 149.99986 * 3 2 1 7 7 C 1.38818 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99452 * 164.52248 * 7 2 1 9 9 N 1.36937 * 120.00162 * 344.51716 * 7 2 1 10 10 C 1.47012 * 121.37477 * 335.96978 * 9 7 2 11 11 C 1.50316 * 109.16472 * 222.96977 * 10 9 7 12 12 C 1.29454 * 123.65460 * 349.02174 * 11 10 9 13 13 C 1.50701 * 117.69515 * 180.85752 * 12 11 10 14 14 C 1.52998 * 109.46807 * 95.00377 * 13 12 11 15 15 N 1.46504 * 109.46899 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99778 * 179.97438 * 15 14 13 17 17 O 1.21568 * 120.00428 * 0.02562 * 16 15 14 18 18 C 1.47768 * 119.99662 * 180.02562 * 16 15 14 19 19 N 1.32737 * 120.06137 * 359.72895 * 18 16 15 20 20 C 1.31723 * 122.13718 * 179.67530 * 19 18 16 21 21 C 1.38306 * 121.68467 * 0.62043 * 20 19 18 22 22 C 1.39025 * 119.09380 * 359.69406 * 21 20 19 23 23 N 1.37181 * 134.65108 * 180.02562 * 22 21 20 24 24 H 0.97003 * 125.06412 * 359.95795 * 23 22 21 25 25 C 1.36721 * 109.87698 * 179.97438 * 23 22 21 26 26 C 1.34559 * 109.95868 * 0.02562 * 25 23 22 27 27 C 1.40408 * 120.05679 * 180.02562 * 18 16 15 28 28 C 1.49972 * 124.60958 * 1.14389 * 12 11 10 29 29 C 1.47334 * 121.37472 * 155.99900 * 9 7 2 30 30 H 0.97005 * 119.99607 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.51643 * 103.06283 * 10 9 7 32 32 H 1.09004 * 109.51808 * 342.88077 * 10 9 7 33 33 H 1.08004 * 118.16918 * 169.00040 * 11 10 9 34 34 H 1.08997 * 109.47020 * 215.00431 * 13 12 11 35 35 H 1.09001 * 109.47326 * 335.00184 * 13 12 11 36 36 H 1.09007 * 109.47212 * 299.99326 * 14 13 12 37 37 H 1.08991 * 109.47395 * 60.00031 * 14 13 12 38 38 H 0.97001 * 120.00117 * 0.02562 * 15 14 13 39 39 H 1.07998 * 119.15672 * 180.29126 * 20 19 18 40 40 H 1.08001 * 120.45371 * 179.66575 * 21 20 19 41 41 H 1.08005 * 125.01877 * 179.97438 * 25 23 22 42 42 H 1.08003 * 126.50683 * 179.97438 * 26 25 23 43 43 H 1.09000 * 109.31400 * 101.00822 * 28 12 11 44 44 H 1.08997 * 109.31188 * 220.43728 * 28 12 11 45 45 H 1.09009 * 109.77415 * 237.78568 * 29 9 7 46 46 H 1.09001 * 109.77952 * 358.58972 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 3.0607 -1.2193 -0.2491 9 7 1.3626 -2.3665 0.3176 10 6 0.1442 -2.3650 1.1402 11 6 0.2243 -3.4820 2.1428 12 6 1.1199 -4.4161 2.1062 13 6 1.0634 -5.4827 3.1693 14 6 0.2866 -6.6897 2.6398 15 7 0.2321 -7.7269 3.6730 16 6 -0.4067 -8.8884 3.4289 17 8 -0.9372 -9.0755 2.3512 18 6 -0.4621 -9.9343 4.4713 19 7 0.1214 -9.7334 5.6465 20 6 0.0920 -10.6347 6.6066 21 6 -0.5409 -11.8531 6.4400 22 6 -1.1670 -12.1298 5.2300 23 7 -1.8681 -13.1973 4.7292 24 1 -2.0506 -14.0194 5.2106 25 6 -2.2709 -12.9301 3.4503 26 6 -1.8532 -11.7046 3.0837 27 6 -1.1267 -11.1449 4.2181 28 6 2.2135 -4.5080 1.0841 29 6 1.8587 -3.6723 -0.1509 30 1 -0.4850 0.8401 0.0004 31 1 -0.7268 -2.5109 0.5011 32 1 0.0584 -1.4121 1.6624 33 1 -0.5058 -3.5065 2.9383 34 1 2.0762 -5.7888 3.4311 35 1 0.5631 -5.0881 4.0537 36 1 -0.7264 -6.3836 2.3781 37 1 0.7868 -7.0843 1.7555 38 1 0.6551 -7.5775 4.5330 39 1 0.5790 -10.4188 7.5460 40 1 -0.5482 -12.5798 7.2389 41 1 -2.8397 -13.6035 2.8262 42 1 -2.0235 -11.2262 2.1305 43 1 3.1438 -4.1408 1.5174 44 1 2.3432 -5.5488 0.7876 45 1 1.0843 -4.1745 -0.7309 46 1 2.7473 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161291339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:09 Heat of formation + Delta-G solvation = 72.396765 kcal Electronic energy + Delta-G solvation = -27775.281304 eV Core-core repulsion = 23859.226981 eV Total energy + Delta-G solvation = -3916.054323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98597 -39.65667 -38.23053 -37.76276 -35.34674 -33.49580 -32.62410 -31.37075 -30.96695 -29.88465 -29.58621 -28.48023 -25.67426 -24.56564 -23.00186 -22.90466 -22.41714 -21.39500 -20.90853 -20.65368 -18.80471 -17.84019 -17.52046 -16.41501 -16.12359 -15.74596 -15.58645 -15.43960 -15.12362 -14.91121 -14.82005 -14.18614 -13.95409 -13.86707 -13.52554 -13.43146 -13.32026 -13.24325 -12.95255 -12.53574 -12.13097 -12.12366 -11.90047 -11.49625 -11.33642 -10.91583 -10.85916 -10.66697 -10.40246 -10.32209 -10.26223 -10.16997 -9.83909 -9.74430 -9.46615 -9.26294 -9.02350 -8.59255 -8.28423 -7.83948 -6.65830 -5.72885 -3.11169 0.14980 1.08711 2.25179 2.53156 2.66927 2.88915 3.20316 3.41909 3.48439 3.51028 3.71902 3.97044 4.21786 4.38232 4.54999 4.55882 4.77569 4.94153 5.04790 5.17608 5.22419 5.30849 5.37913 5.46248 5.58272 5.60946 5.65229 5.73875 5.89053 6.05248 6.11477 6.14197 6.22198 6.27260 6.30565 6.44013 6.47435 6.49702 6.63654 6.86663 6.93615 6.98425 7.31553 7.35948 7.41279 7.49232 7.66583 7.81201 7.96365 8.18126 8.45442 9.26828 9.89948 10.48866 11.37494 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.001773 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.707718 B =15790.797326 C =16168.254227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.197 3.803 11 C -0.147 4.147 12 C -0.141 4.141 13 C -0.092 4.092 14 C 0.123 3.877 15 N -0.709 5.709 16 C 0.568 3.432 17 O -0.528 6.528 18 C 0.138 3.862 19 N -0.474 5.474 20 C 0.099 3.901 21 C -0.160 4.160 22 C 0.118 3.882 23 N -0.589 5.589 24 H 0.419 0.581 25 C 0.047 3.953 26 C -0.167 4.167 27 C -0.110 4.110 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.409 0.591 39 H 0.165 0.835 40 H 0.136 0.864 41 H 0.179 0.821 42 H 0.164 0.836 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.024 0.976 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 -28.860 14.416 32.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.085 0.915 9 N -0.319 5.319 10 C 0.072 3.928 11 C -0.167 4.167 12 C -0.142 4.142 13 C -0.130 4.130 14 C 0.001 3.999 15 N -0.360 5.360 16 C 0.352 3.648 17 O -0.403 6.403 18 C -0.007 4.007 19 N -0.187 5.187 20 C -0.055 4.055 21 C -0.184 4.184 22 C 0.003 3.997 23 N -0.193 5.193 24 H 0.257 0.743 25 C -0.078 4.078 26 C -0.192 4.192 27 C -0.119 4.119 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.245 0.755 39 H 0.182 0.818 40 H 0.153 0.847 41 H 0.196 0.804 42 H 0.181 0.819 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.199 -28.134 13.807 31.502 hybrid contribution 0.017 -0.372 0.739 0.828 sum -3.182 -28.506 14.546 32.161 Atomic orbital electron populations 1.70023 1.05153 1.25379 1.54934 1.24989 0.95388 0.98246 1.01458 0.86268 0.79038 0.83683 0.77626 1.21493 1.21626 1.20595 1.19173 0.92169 0.84434 1.41522 0.91460 1.44136 1.29287 1.01137 1.57344 1.19702 0.88599 0.94777 0.89755 1.23114 0.96771 0.97377 0.99446 1.20232 0.99235 0.96561 0.98170 1.20910 1.00117 0.94065 0.97877 1.21496 1.01337 0.86670 0.90441 1.45955 1.55360 1.15759 1.18951 1.17729 0.79165 0.81701 0.86179 1.90781 1.45823 1.79490 1.24249 1.20703 0.95427 0.92430 0.92162 1.67552 1.17850 1.33056 1.00221 1.22359 0.96836 0.88580 0.97679 1.21198 1.01781 0.99919 0.95473 1.18278 0.97325 0.88859 0.95238 1.41665 1.47887 1.16067 1.13699 0.74327 1.22139 1.01935 0.98428 0.85304 1.21988 1.03036 0.94512 0.99689 1.19861 1.02287 0.94181 0.95564 1.20794 0.96571 0.99017 0.96645 1.20993 0.97283 0.87218 0.92864 0.93688 0.94450 0.89199 0.89045 0.91368 0.91438 0.91081 0.91079 0.75496 0.81793 0.84656 0.80422 0.81856 0.91921 0.92874 0.95787 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.77 11.08 55.49 0.61 -26.16 16 2 C 0.00 -0.09 5.01 -17.43 -0.09 -0.18 16 3 Si 0.90 22.07 29.58 -169.99 -5.03 17.04 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.83 9.71 -15.06 -0.15 -6.97 16 8 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 9 N -0.60 -15.40 3.01 -173.56 -0.52 -15.92 16 10 C 0.20 4.85 5.23 -5.10 -0.03 4.82 16 11 C -0.15 -2.94 9.47 -35.78 -0.34 -3.28 16 12 C -0.14 -2.52 5.11 -100.99 -0.52 -3.03 16 13 C -0.09 -1.28 5.32 -27.88 -0.15 -1.43 16 14 C 0.12 1.72 5.66 -4.04 -0.02 1.70 16 15 N -0.71 -9.10 5.55 -61.27 -0.34 -9.44 16 16 C 0.57 8.15 7.80 -12.36 -0.10 8.06 16 17 O -0.53 -8.89 15.15 5.31 0.08 -8.81 16 18 C 0.14 1.74 6.78 -82.76 -0.56 1.18 16 19 N -0.47 -5.17 9.54 -9.66 -0.09 -5.27 16 20 C 0.10 0.79 11.13 -17.57 -0.20 0.59 16 21 C -0.16 -1.11 10.14 -39.26 -0.40 -1.51 16 22 C 0.12 1.02 7.34 -84.03 -0.62 0.40 16 23 N -0.59 -3.39 6.04 -10.59 -0.06 -3.45 16 24 H 0.42 0.91 8.96 -40.82 -0.37 0.54 16 25 C 0.05 0.30 11.82 -16.67 -0.20 0.10 16 26 C -0.17 -1.70 10.26 -37.83 -0.39 -2.09 16 27 C -0.11 -1.28 6.15 -104.88 -0.65 -1.92 16 28 C -0.09 -1.66 5.95 -28.09 -0.17 -1.83 16 29 C 0.14 3.10 6.59 -3.44 -0.02 3.07 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16 33 H 0.09 1.63 7.73 -52.48 -0.41 1.22 16 34 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 35 H 0.07 0.89 7.78 -51.93 -0.40 0.48 16 36 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 37 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 38 H 0.41 4.55 7.81 -40.82 -0.32 4.23 16 39 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.16 1.80 7.23 -52.48 -0.38 1.42 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 45 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -34.59 381.87 -10.56 -45.15 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.39 Total: 3.42 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.57 Total: -2.31 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.40 Total: -60.24 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.59 -10.56 -45.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161291339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.545 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds