Wall clock time and date at job start Tue Mar 31 2020 23:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00543 * 2 1 4 4 H 1.48507 * 109.47179 * 270.00075 * 3 2 1 5 5 H 1.48501 * 109.47307 * 29.99956 * 3 2 1 6 6 H 1.48499 * 109.47498 * 149.99986 * 3 2 1 7 7 C 1.38818 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99452 * 164.52248 * 7 2 1 9 9 N 1.36937 * 120.00162 * 344.51716 * 7 2 1 10 10 C 1.47012 * 121.37477 * 335.96978 * 9 7 2 11 11 C 1.50316 * 109.16472 * 222.96977 * 10 9 7 12 12 C 1.29454 * 123.65460 * 349.02174 * 11 10 9 13 13 C 1.50701 * 117.69515 * 180.85752 * 12 11 10 14 14 C 1.52998 * 109.46807 * 95.00377 * 13 12 11 15 15 N 1.46504 * 109.46899 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99778 * 179.97438 * 15 14 13 17 17 O 1.21568 * 120.00428 * 0.02562 * 16 15 14 18 18 C 1.47768 * 119.99662 * 180.02562 * 16 15 14 19 19 N 1.32737 * 120.06137 * 359.72895 * 18 16 15 20 20 C 1.31723 * 122.13718 * 179.67530 * 19 18 16 21 21 C 1.38306 * 121.68467 * 0.62043 * 20 19 18 22 22 C 1.39025 * 119.09380 * 359.69406 * 21 20 19 23 23 N 1.37181 * 134.65108 * 180.02562 * 22 21 20 24 24 H 0.97003 * 125.06412 * 359.95795 * 23 22 21 25 25 C 1.36721 * 109.87698 * 179.97438 * 23 22 21 26 26 C 1.34559 * 109.95868 * 0.02562 * 25 23 22 27 27 C 1.40408 * 120.05679 * 180.02562 * 18 16 15 28 28 C 1.49972 * 124.60958 * 1.14389 * 12 11 10 29 29 C 1.47334 * 121.37472 * 155.99900 * 9 7 2 30 30 H 0.97005 * 119.99607 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.51643 * 103.06283 * 10 9 7 32 32 H 1.09004 * 109.51808 * 342.88077 * 10 9 7 33 33 H 1.08004 * 118.16918 * 169.00040 * 11 10 9 34 34 H 1.08997 * 109.47020 * 215.00431 * 13 12 11 35 35 H 1.09001 * 109.47326 * 335.00184 * 13 12 11 36 36 H 1.09007 * 109.47212 * 299.99326 * 14 13 12 37 37 H 1.08991 * 109.47395 * 60.00031 * 14 13 12 38 38 H 0.97001 * 120.00117 * 0.02562 * 15 14 13 39 39 H 1.07998 * 119.15672 * 180.29126 * 20 19 18 40 40 H 1.08001 * 120.45371 * 179.66575 * 21 20 19 41 41 H 1.08005 * 125.01877 * 179.97438 * 25 23 22 42 42 H 1.08003 * 126.50683 * 179.97438 * 26 25 23 43 43 H 1.09000 * 109.31400 * 101.00822 * 28 12 11 44 44 H 1.08997 * 109.31188 * 220.43728 * 28 12 11 45 45 H 1.09009 * 109.77415 * 237.78568 * 29 9 7 46 46 H 1.09001 * 109.77952 * 358.58972 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 3.0607 -1.2193 -0.2491 9 7 1.3626 -2.3665 0.3176 10 6 0.1442 -2.3650 1.1402 11 6 0.2243 -3.4820 2.1428 12 6 1.1199 -4.4161 2.1062 13 6 1.0634 -5.4827 3.1693 14 6 0.2866 -6.6897 2.6398 15 7 0.2321 -7.7269 3.6730 16 6 -0.4067 -8.8884 3.4289 17 8 -0.9372 -9.0755 2.3512 18 6 -0.4621 -9.9343 4.4713 19 7 0.1214 -9.7334 5.6465 20 6 0.0920 -10.6347 6.6066 21 6 -0.5409 -11.8531 6.4400 22 6 -1.1670 -12.1298 5.2300 23 7 -1.8681 -13.1973 4.7292 24 1 -2.0506 -14.0194 5.2106 25 6 -2.2709 -12.9301 3.4503 26 6 -1.8532 -11.7046 3.0837 27 6 -1.1267 -11.1449 4.2181 28 6 2.2135 -4.5080 1.0841 29 6 1.8587 -3.6723 -0.1509 30 1 -0.4850 0.8401 0.0004 31 1 -0.7268 -2.5109 0.5011 32 1 0.0584 -1.4121 1.6624 33 1 -0.5058 -3.5065 2.9383 34 1 2.0762 -5.7888 3.4311 35 1 0.5631 -5.0881 4.0537 36 1 -0.7264 -6.3836 2.3781 37 1 0.7868 -7.0843 1.7555 38 1 0.6551 -7.5775 4.5330 39 1 0.5790 -10.4188 7.5460 40 1 -0.5482 -12.5798 7.2389 41 1 -2.8397 -13.6035 2.8262 42 1 -2.0235 -11.2262 2.1305 43 1 3.1438 -4.1408 1.5174 44 1 2.3432 -5.5488 0.7876 45 1 1.0843 -4.1745 -0.7309 46 1 2.7473 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161291339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:08 Heat of formation + Delta-G solvation = 48.985801 kcal Electronic energy + Delta-G solvation = -27776.296479 eV Core-core repulsion = 23859.226981 eV Total energy + Delta-G solvation = -3917.069499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60838 -40.66050 -39.46681 -38.84918 -36.74257 -35.09970 -33.41137 -33.01938 -31.67878 -31.46367 -30.60668 -29.76682 -27.24764 -25.68298 -24.56725 -23.90116 -23.53317 -22.50034 -22.20312 -21.51741 -19.57150 -19.41419 -18.60100 -17.60844 -17.09845 -16.98126 -16.81637 -16.65381 -16.11196 -15.83377 -15.78418 -15.54337 -15.37052 -15.24500 -14.90777 -14.84745 -14.28643 -14.12480 -13.89504 -13.84298 -13.64453 -13.37139 -13.18708 -12.84293 -12.78132 -12.77107 -12.56224 -12.35665 -12.17564 -11.88803 -11.66430 -11.36564 -11.14567 -10.97448 -10.67039 -10.64537 -10.13233 -9.88749 -9.47867 -8.88682 -8.73918 -7.86885 -5.28930 -0.55860 0.45434 1.42227 1.47033 1.48474 1.57848 1.58511 1.81474 2.03266 2.16559 2.52063 2.95062 3.21734 3.29863 3.60488 3.68472 3.84453 3.97221 4.03019 4.06212 4.12796 4.20501 4.30580 4.43738 4.53383 4.56809 4.58894 4.61762 4.69467 4.87685 4.91180 4.92186 4.98230 5.04056 5.09112 5.18589 5.24955 5.39559 5.43239 5.45361 5.51365 5.57848 5.61845 5.85167 5.89141 6.29202 6.34755 6.44333 6.57604 6.90174 7.14086 7.18123 7.84265 8.39597 9.21842 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.001773 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.707718 B =15790.797326 C =16168.254227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.207 3.793 11 C -0.174 4.174 12 C -0.119 4.119 13 C -0.078 4.078 14 C 0.132 3.868 15 N -0.700 5.700 16 C 0.563 3.437 17 O -0.566 6.566 18 C 0.097 3.903 19 N -0.482 5.482 20 C 0.083 3.917 21 C -0.136 4.136 22 C 0.105 3.895 23 N -0.572 5.572 24 H 0.440 0.560 25 C 0.088 3.912 26 C -0.224 4.224 27 C -0.135 4.135 28 C -0.087 4.087 29 C 0.136 3.864 30 H 0.249 0.751 31 H 0.003 0.997 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.419 0.581 39 H 0.199 0.801 40 H 0.178 0.822 41 H 0.221 0.779 42 H 0.140 0.860 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.018 0.982 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 -32.106 17.191 36.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.082 3.918 11 C -0.193 4.193 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.009 3.991 15 N -0.351 5.351 16 C 0.349 3.651 17 O -0.444 6.444 18 C -0.047 4.047 19 N -0.195 5.195 20 C -0.071 4.071 21 C -0.158 4.158 22 C -0.011 4.011 23 N -0.177 5.177 24 H 0.282 0.718 25 C -0.039 4.039 26 C -0.250 4.250 27 C -0.144 4.144 28 C -0.126 4.126 29 C 0.010 3.990 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.256 0.744 39 H 0.215 0.785 40 H 0.195 0.805 41 H 0.238 0.762 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.036 0.964 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.961 -31.421 16.620 35.600 hybrid contribution -0.367 0.433 -0.118 0.580 sum -2.328 -30.988 16.502 35.185 Atomic orbital electron populations 1.70204 1.06666 1.25770 1.56220 1.25820 0.96213 1.01568 1.01705 0.85201 0.77954 0.79285 0.77563 1.21102 1.21898 1.19450 1.19540 0.92573 0.85599 1.40999 0.91081 1.44427 1.29437 1.02096 1.57957 1.19349 0.87315 0.95189 0.89943 1.22828 0.99395 0.97188 0.99925 1.20549 0.97228 0.96124 0.98054 1.20796 1.01672 0.92410 0.96727 1.21257 1.00243 0.86981 0.90643 1.45803 1.55178 1.15147 1.19006 1.18163 0.78388 0.82237 0.86313 1.90746 1.47463 1.80308 1.25928 1.20409 0.98717 0.92788 0.92769 1.67472 1.17634 1.34319 1.00117 1.23013 0.97313 0.88688 0.98118 1.21662 0.98776 0.99957 0.95445 1.18516 0.98180 0.89027 0.95342 1.41683 1.46543 1.16143 1.13380 0.71807 1.22668 0.98906 0.97068 0.85292 1.21956 1.06607 0.96837 0.99552 1.20187 1.02397 0.94749 0.97047 1.20753 0.96736 1.00065 0.95017 1.21188 0.97086 0.86024 0.94677 0.94161 0.97939 0.92622 0.87002 0.89013 0.89983 0.92853 0.91842 0.74354 0.78467 0.80464 0.76248 0.84173 0.91231 0.89671 0.96359 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 11.08 21.65 0.24 -57.57 16 2 C -0.06 -3.39 5.01 84.86 0.43 -2.97 16 3 Si 0.97 46.27 29.58 68.60 2.03 48.30 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.26 -14.72 9.71 84.03 0.82 -13.90 16 8 H 0.07 3.92 7.88 -2.91 -0.02 3.89 16 9 N -0.62 -32.73 3.01 -703.02 -2.11 -34.84 16 10 C 0.21 10.75 5.23 85.41 0.45 11.20 16 11 C -0.17 -7.05 9.47 27.10 0.26 -6.79 16 12 C -0.12 -4.11 5.11 -15.14 -0.08 -4.19 16 13 C -0.08 -2.02 5.32 29.85 0.16 -1.86 16 14 C 0.13 3.64 5.66 86.38 0.49 4.13 16 15 N -0.70 -17.90 5.55 -466.04 -2.58 -20.48 16 16 C 0.56 16.86 7.80 86.76 0.68 17.53 16 17 O -0.57 -20.43 15.15 -3.93 -0.06 -20.49 16 18 C 0.10 2.48 6.78 42.06 0.29 2.77 16 19 N -0.48 -10.04 9.54 -184.49 -1.76 -11.80 16 20 C 0.08 1.09 11.13 84.73 0.94 2.03 16 21 C -0.14 -1.38 10.14 22.47 0.23 -1.15 16 22 C 0.10 1.56 7.34 39.24 0.29 1.85 16 23 N -0.57 -4.66 6.04 -187.43 -1.13 -5.80 16 24 H 0.44 -0.07 8.96 -92.71 -0.83 -0.90 16 25 C 0.09 0.92 11.82 83.09 0.98 1.90 16 26 C -0.22 -4.68 10.26 23.41 0.24 -4.44 16 27 C -0.13 -3.13 6.15 -20.03 -0.12 -3.25 16 28 C -0.09 -3.04 5.95 29.71 0.18 -2.86 16 29 C 0.14 5.91 6.59 86.31 0.57 6.48 16 30 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 31 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 32 H 0.06 3.21 6.41 -2.38 -0.02 3.20 16 33 H 0.11 4.00 7.73 -2.91 -0.02 3.98 16 34 H 0.09 2.02 8.11 -2.39 -0.02 2.00 16 35 H 0.08 1.95 7.78 -2.39 -0.02 1.93 16 36 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.06 1.85 8.11 -2.39 -0.02 1.83 16 38 H 0.42 8.92 7.81 -92.71 -0.72 8.20 16 39 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 41 H 0.22 0.29 8.06 -2.91 -0.02 0.27 16 42 H 0.14 3.47 7.23 -2.91 -0.02 3.45 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 45 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.06 2.52 7.96 -2.39 -0.02 2.50 16 Total: -1.00 -81.33 381.87 0.87 -80.46 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.53 Total: 15.75 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.78 Total: 6.47 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -7.35 Total: -130.49 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.06 Total: -20.49 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -81.33 0.87 -80.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161291339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.448 kcal (2) G-P(sol) polarization free energy of solvation -81.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds