Wall clock time and date at job start Tue Mar 31 2020 22:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48508 * 109.47015 * 239.99652 * 3 2 1 5 5 H 1.48495 * 109.47441 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47163 * 120.00136 * 3 2 1 7 7 C 1.38811 * 119.99320 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99598 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00481 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00001 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46726 * 184.97697 * 10 9 7 12 12 C 1.52998 * 115.55235 * 294.86652 * 11 10 9 13 13 C 1.53007 * 109.46917 * 279.46529 * 12 11 10 14 14 N 1.46509 * 109.46736 * 184.96318 * 13 12 11 15 15 C 1.34777 * 119.99829 * 179.97438 * 14 13 12 16 16 O 1.21535 * 119.99845 * 0.02562 * 15 14 13 17 17 C 1.48001 * 119.99806 * 179.97438 * 15 14 13 18 18 C 1.38890 * 121.16899 * 354.22121 * 17 15 14 19 19 C 1.39352 * 119.66832 * 180.02562 * 18 17 15 20 20 N 1.31099 * 121.90496 * 0.02562 * 19 18 17 21 21 C 1.33288 * 121.61891 * 359.97438 * 20 19 18 22 22 C 1.40834 * 121.91694 * 180.02562 * 21 20 19 23 23 C 1.36166 * 118.77070 * 179.97438 * 22 21 20 24 24 N 1.32534 * 121.95868 * 359.97438 * 23 22 21 25 25 C 1.31342 * 122.60580 * 0.02562 * 24 23 22 26 26 C 1.40083 * 119.87289 * 0.27348 * 25 24 23 27 27 C 1.52999 * 117.51935 * 80.57424 * 11 10 9 28 28 C 1.52995 * 60.00062 * 107.47690 * 27 11 10 29 29 H 0.97005 * 119.99793 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00131 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46815 * 64.97824 * 10 9 7 32 32 H 1.08997 * 109.47025 * 304.97373 * 10 9 7 33 33 H 1.08995 * 109.47395 * 159.46283 * 12 11 10 34 34 H 1.08997 * 109.47096 * 39.45830 * 12 11 10 35 35 H 1.08992 * 109.47266 * 64.96531 * 13 12 11 36 36 H 1.09002 * 109.46672 * 304.95864 * 13 12 11 37 37 H 0.97002 * 119.99927 * 0.02562 * 14 13 12 38 38 H 1.07996 * 120.17022 * 0.03765 * 18 17 15 39 39 H 1.08003 * 119.05081 * 180.02562 * 19 18 17 40 40 H 1.07994 * 120.61672 * 359.95304 * 22 21 20 41 41 H 1.08004 * 119.02024 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.06132 * 180.02562 * 25 24 23 43 43 H 1.09004 * 117.49632 * 214.97005 * 27 11 10 44 44 H 1.09003 * 117.49923 * 359.97438 * 27 11 10 45 45 H 1.09002 * 117.50163 * 252.50588 * 28 27 11 46 46 H 1.09000 * 117.49811 * 107.49507 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0681 -4.8170 -0.1223 12 6 0.1076 -4.9936 1.0554 13 6 0.8216 -5.7317 2.1897 14 7 -0.1302 -6.0055 3.2693 15 6 0.2777 -6.6520 4.3793 16 8 1.4352 -7.0074 4.4849 17 6 -0.6836 -6.9282 5.4702 18 6 -1.9795 -6.4300 5.4296 19 6 -2.8587 -6.7089 6.4742 20 7 -2.5007 -7.4334 7.5064 21 6 -1.2734 -7.9429 7.6106 22 6 -0.8823 -8.7225 8.7164 23 6 0.3878 -9.2117 8.7570 24 7 1.2616 -8.9760 7.7888 25 6 0.9671 -8.2584 6.7289 26 6 -0.3125 -7.7043 6.5950 27 6 0.5417 -5.1510 -1.5195 28 6 1.5476 -6.0812 -0.8384 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0016 31 1 2.6167 -3.7538 0.9325 32 1 2.7490 -3.6774 -0.8410 33 1 -0.7587 -5.5719 0.7343 34 1 -0.2191 -4.0152 1.4077 35 1 1.6347 -5.1136 2.5702 36 1 1.2251 -6.6719 1.8138 37 1 -1.0540 -5.7222 3.1849 38 1 -2.3042 -5.8297 4.5926 39 1 -3.8642 -6.3168 6.4321 40 1 -1.5767 -8.9281 9.5176 41 1 0.6919 -9.8104 9.6029 42 1 1.7113 -8.0925 5.9640 43 1 -0.4890 -5.4965 -1.5996 44 1 0.9002 -4.5439 -2.3508 45 1 2.5680 -6.0862 -1.2217 46 1 1.1787 -7.0386 -0.4706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166408565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:33 Heat of formation + Delta-G solvation = 70.751153 kcal Electronic energy + Delta-G solvation = -27992.868422 eV Core-core repulsion = 24076.742740 eV Total energy + Delta-G solvation = -3916.125682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74758 -39.82587 -38.40723 -38.29155 -35.23075 -34.01800 -33.92717 -31.92515 -31.17124 -30.80123 -29.83776 -26.25862 -25.75137 -24.55841 -24.19267 -22.95651 -22.73409 -21.79802 -21.22782 -19.16318 -18.68348 -18.14438 -17.66284 -17.11493 -16.40205 -16.20119 -15.89860 -15.31670 -15.21766 -15.05320 -14.88753 -14.59586 -14.45298 -14.27494 -13.66476 -13.52011 -13.46620 -13.16700 -13.12931 -12.70068 -12.42306 -12.38069 -12.02461 -11.54215 -11.20071 -11.05071 -10.98572 -10.86427 -10.80688 -10.56436 -10.20422 -10.10535 -9.96432 -9.75606 -9.74881 -9.60468 -9.37802 -9.33406 -8.88893 -8.86953 -6.93756 -5.79466 -3.07240 -0.46065 0.26122 1.17009 2.40509 2.68715 2.81781 3.42465 3.47003 3.47700 3.69123 3.70748 3.97561 4.00213 4.08373 4.14424 4.28131 4.31000 4.58772 4.75152 4.89530 4.91923 4.95333 5.03386 5.07921 5.15276 5.20314 5.32783 5.43112 5.49943 5.51990 5.55620 5.58649 5.65801 5.85616 5.91451 6.01094 6.09969 6.16903 6.20521 6.31882 6.35691 6.41448 6.45585 6.71450 6.78611 7.12628 7.27959 7.61256 7.67486 7.81764 8.39926 9.51559 10.09266 10.44856 11.43381 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.002243 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.569837 B =12480.917539 C =13217.404863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.187 3.813 11 C -0.120 4.120 12 C -0.092 4.092 13 C 0.121 3.879 14 N -0.711 5.711 15 C 0.557 3.443 16 O -0.523 6.523 17 C -0.043 4.043 18 C -0.144 4.144 19 C 0.150 3.850 20 N -0.463 5.463 21 C 0.153 3.847 22 C -0.151 4.151 23 C 0.094 3.906 24 N -0.487 5.487 25 C 0.162 3.838 26 C -0.134 4.134 27 C -0.162 4.162 28 C -0.178 4.178 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.147 0.853 41 H 0.161 0.839 42 H 0.200 0.800 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -19.111 11.318 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.121 4.121 12 C -0.130 4.130 13 C -0.001 4.001 14 N -0.361 5.361 15 C 0.342 3.658 16 O -0.400 6.400 17 C -0.056 4.056 18 C -0.165 4.165 19 C -0.023 4.023 20 N -0.171 5.171 21 C 0.027 3.973 22 C -0.171 4.171 23 C -0.051 4.051 24 N -0.196 5.196 25 C -0.010 4.010 26 C -0.139 4.139 27 C -0.199 4.199 28 C -0.215 4.215 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.237 0.763 38 H 0.168 0.832 39 H 0.190 0.810 40 H 0.165 0.835 41 H 0.178 0.822 42 H 0.217 0.783 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.558 -19.878 12.327 24.042 hybrid contribution -0.777 1.769 -0.798 2.090 sum -6.335 -18.109 11.530 22.383 Atomic orbital electron populations 1.69643 1.05072 1.25709 1.57885 1.24711 0.95525 0.97619 1.03083 0.86278 0.78544 0.83562 0.77881 1.21293 1.21705 1.21280 1.19187 0.91010 0.84172 1.42593 0.91306 1.42280 1.05855 0.99642 1.89402 1.20190 0.91810 0.84117 0.97919 1.21544 1.00783 0.97167 0.92573 1.21272 0.96883 1.01516 0.93317 1.21540 0.91943 1.00599 0.86014 1.45962 1.14522 1.57705 1.17954 1.17995 0.87228 0.78621 0.81909 1.90626 1.18373 1.51825 1.79216 1.20386 0.94374 0.96579 0.94286 1.22565 0.93106 0.99892 1.00914 1.23164 0.99983 0.91496 0.87697 1.67872 1.16577 1.08738 1.23955 1.18926 0.89080 0.95504 0.93790 1.21715 0.98257 0.99051 0.98066 1.22437 0.89316 0.96416 0.96888 1.67759 1.35861 1.14233 1.01698 1.24486 0.94085 0.87713 0.94684 1.19677 0.97651 1.01003 0.95577 1.22961 0.98406 1.02581 0.95980 1.22991 0.99795 0.93915 1.04823 0.93524 0.78194 0.96142 0.95891 0.91759 0.89416 0.90281 0.90947 0.76256 0.83245 0.81001 0.83503 0.82228 0.78347 0.89337 0.88524 0.88874 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.60 5.41 -59.90 -0.32 -17.92 16 10 C 0.19 3.61 6.10 -4.04 -0.02 3.58 16 11 C -0.12 -1.76 1.54 -154.51 -0.24 -2.00 16 12 C -0.09 -1.17 5.20 -26.73 -0.14 -1.31 16 13 C 0.12 1.47 5.62 -4.03 -0.02 1.44 16 14 N -0.71 -7.24 5.51 -61.19 -0.34 -7.58 16 15 C 0.56 6.58 7.76 -12.26 -0.10 6.48 16 16 O -0.52 -7.64 13.61 5.33 0.07 -7.57 16 17 C -0.04 -0.45 5.93 -104.37 -0.62 -1.07 16 18 C -0.14 -1.07 9.60 -38.93 -0.37 -1.45 16 19 C 0.15 1.13 11.14 -17.45 -0.19 0.93 16 20 N -0.46 -4.72 10.33 -10.95 -0.11 -4.83 16 21 C 0.15 1.70 6.63 -84.88 -0.56 1.14 16 22 C -0.15 -1.41 10.08 -39.35 -0.40 -1.81 16 23 C 0.09 0.89 11.06 -17.99 -0.20 0.69 16 24 N -0.49 -5.91 10.31 -13.24 -0.14 -6.04 16 25 C 0.16 2.02 10.52 -17.07 -0.18 1.84 16 26 C -0.13 -1.58 5.77 -106.54 -0.61 -2.19 16 27 C -0.16 -2.24 9.90 -26.73 -0.26 -2.50 16 28 C -0.18 -2.19 9.43 -26.73 -0.25 -2.44 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.38 9.67 7.10 -40.82 -0.29 9.38 16 31 H 0.02 0.41 7.93 -51.93 -0.41 0.00 16 32 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.06 0.68 7.94 -51.93 -0.41 0.27 16 34 H 0.09 1.32 7.41 -51.93 -0.38 0.93 16 35 H 0.08 1.14 7.93 -51.93 -0.41 0.72 16 36 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 37 H 0.40 2.98 6.65 -40.82 -0.27 2.71 16 38 H 0.15 0.65 6.56 -52.49 -0.34 0.30 16 39 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.20 2.62 5.09 -52.49 -0.27 2.35 16 43 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 44 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -33.56 385.65 -9.84 -43.40 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.09 Total: 10.17 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.42 Total: -5.81 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.19 Total: -63.13 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.56 -9.84 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166408565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.152 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds