Wall clock time and date at job start Tue Mar 31 2020 22:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48508 * 109.47015 * 239.99652 * 3 2 1 5 5 H 1.48495 * 109.47441 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47163 * 120.00136 * 3 2 1 7 7 C 1.38811 * 119.99320 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99598 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00481 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00001 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46726 * 184.97697 * 10 9 7 12 12 C 1.52998 * 115.55235 * 294.86652 * 11 10 9 13 13 C 1.53007 * 109.46917 * 279.46529 * 12 11 10 14 14 N 1.46509 * 109.46736 * 184.96318 * 13 12 11 15 15 C 1.34777 * 119.99829 * 179.97438 * 14 13 12 16 16 O 1.21535 * 119.99845 * 0.02562 * 15 14 13 17 17 C 1.48001 * 119.99806 * 179.97438 * 15 14 13 18 18 C 1.38890 * 121.16899 * 354.22121 * 17 15 14 19 19 C 1.39352 * 119.66832 * 180.02562 * 18 17 15 20 20 N 1.31099 * 121.90496 * 0.02562 * 19 18 17 21 21 C 1.33288 * 121.61891 * 359.97438 * 20 19 18 22 22 C 1.40834 * 121.91694 * 180.02562 * 21 20 19 23 23 C 1.36166 * 118.77070 * 179.97438 * 22 21 20 24 24 N 1.32534 * 121.95868 * 359.97438 * 23 22 21 25 25 C 1.31342 * 122.60580 * 0.02562 * 24 23 22 26 26 C 1.40083 * 119.87289 * 0.27348 * 25 24 23 27 27 C 1.52999 * 117.51935 * 80.57424 * 11 10 9 28 28 C 1.52995 * 60.00062 * 107.47690 * 27 11 10 29 29 H 0.97005 * 119.99793 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00131 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46815 * 64.97824 * 10 9 7 32 32 H 1.08997 * 109.47025 * 304.97373 * 10 9 7 33 33 H 1.08995 * 109.47395 * 159.46283 * 12 11 10 34 34 H 1.08997 * 109.47096 * 39.45830 * 12 11 10 35 35 H 1.08992 * 109.47266 * 64.96531 * 13 12 11 36 36 H 1.09002 * 109.46672 * 304.95864 * 13 12 11 37 37 H 0.97002 * 119.99927 * 0.02562 * 14 13 12 38 38 H 1.07996 * 120.17022 * 0.03765 * 18 17 15 39 39 H 1.08003 * 119.05081 * 180.02562 * 19 18 17 40 40 H 1.07994 * 120.61672 * 359.95304 * 22 21 20 41 41 H 1.08004 * 119.02024 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.06132 * 180.02562 * 25 24 23 43 43 H 1.09004 * 117.49632 * 214.97005 * 27 11 10 44 44 H 1.09003 * 117.49923 * 359.97438 * 27 11 10 45 45 H 1.09002 * 117.50163 * 252.50588 * 28 27 11 46 46 H 1.09000 * 117.49811 * 107.49507 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0681 -4.8170 -0.1223 12 6 0.1076 -4.9936 1.0554 13 6 0.8216 -5.7317 2.1897 14 7 -0.1302 -6.0055 3.2693 15 6 0.2777 -6.6520 4.3793 16 8 1.4352 -7.0074 4.4849 17 6 -0.6836 -6.9282 5.4702 18 6 -1.9795 -6.4300 5.4296 19 6 -2.8587 -6.7089 6.4742 20 7 -2.5007 -7.4334 7.5064 21 6 -1.2734 -7.9429 7.6106 22 6 -0.8823 -8.7225 8.7164 23 6 0.3878 -9.2117 8.7570 24 7 1.2616 -8.9760 7.7888 25 6 0.9671 -8.2584 6.7289 26 6 -0.3125 -7.7043 6.5950 27 6 0.5417 -5.1510 -1.5195 28 6 1.5476 -6.0812 -0.8384 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0016 31 1 2.6167 -3.7538 0.9325 32 1 2.7490 -3.6774 -0.8410 33 1 -0.7587 -5.5719 0.7343 34 1 -0.2191 -4.0152 1.4077 35 1 1.6347 -5.1136 2.5702 36 1 1.2251 -6.6719 1.8138 37 1 -1.0540 -5.7222 3.1849 38 1 -2.3042 -5.8297 4.5926 39 1 -3.8642 -6.3168 6.4321 40 1 -1.5767 -8.9281 9.5176 41 1 0.6919 -9.8104 9.6029 42 1 1.7113 -8.0925 5.9640 43 1 -0.4890 -5.4965 -1.5996 44 1 0.9002 -4.5439 -2.3508 45 1 2.5680 -6.0862 -1.2217 46 1 1.1787 -7.0386 -0.4706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166408565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:33 Heat of formation + Delta-G solvation = 47.952954 kcal Electronic energy + Delta-G solvation = -27993.857027 eV Core-core repulsion = 24076.742740 eV Total energy + Delta-G solvation = -3917.114286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50078 -40.73902 -39.52620 -39.07986 -36.28789 -35.78135 -34.74226 -32.76901 -32.65887 -31.98032 -30.75745 -27.84889 -26.72551 -25.27532 -25.11263 -24.60697 -23.85073 -22.88126 -22.10670 -20.17717 -19.58147 -19.19816 -18.87949 -18.41455 -17.26442 -17.08771 -16.91047 -16.63436 -16.25073 -16.04906 -15.77770 -15.67219 -15.50741 -15.30681 -15.04211 -14.78477 -14.49610 -14.19444 -14.17144 -13.90817 -13.87849 -13.17944 -13.06161 -12.99013 -12.76435 -12.54490 -12.26514 -12.18233 -11.94022 -11.85877 -11.76899 -11.54038 -11.11550 -10.92999 -10.87283 -10.57056 -10.48913 -10.39887 -10.26747 -9.61973 -8.95798 -7.94243 -5.21021 -1.20082 -0.44222 0.38254 1.47146 1.48998 1.55073 1.62430 1.81852 2.02664 2.54839 2.90758 2.94629 3.06266 3.25789 3.36181 3.39161 3.43703 3.57343 3.60869 3.85225 3.85626 3.99077 4.06683 4.16311 4.21861 4.23822 4.34541 4.44621 4.50069 4.52907 4.64915 4.65929 4.78764 4.81368 4.86656 4.93727 4.99413 5.10975 5.18490 5.27621 5.28477 5.31699 5.36463 5.40581 5.49751 5.55250 6.28687 6.30951 6.59558 6.82240 6.97928 7.36148 8.12560 8.38549 9.28723 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.002243 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.569837 B =12480.917539 C =13217.404863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.186 3.814 11 C -0.138 4.138 12 C -0.078 4.078 13 C 0.131 3.869 14 N -0.698 5.698 15 C 0.556 3.444 16 O -0.559 6.559 17 C -0.065 4.065 18 C -0.120 4.120 19 C 0.155 3.845 20 N -0.477 5.477 21 C 0.133 3.867 22 C -0.144 4.144 23 C 0.084 3.916 24 N -0.508 5.508 25 C 0.139 3.861 26 C -0.149 4.149 27 C -0.164 4.164 28 C -0.151 4.151 29 H 0.251 0.749 30 H 0.378 0.622 31 H 0.014 0.986 32 H 0.016 0.984 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.417 0.583 38 H 0.186 0.814 39 H 0.215 0.785 40 H 0.171 0.829 41 H 0.191 0.809 42 H 0.184 0.816 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 -19.870 11.552 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.060 3.940 11 C -0.139 4.139 12 C -0.116 4.116 13 C 0.008 3.992 14 N -0.350 5.350 15 C 0.343 3.657 16 O -0.439 6.439 17 C -0.079 4.079 18 C -0.141 4.141 19 C -0.019 4.019 20 N -0.186 5.186 21 C 0.008 3.992 22 C -0.164 4.164 23 C -0.060 4.060 24 N -0.217 5.217 25 C -0.032 4.032 26 C -0.154 4.154 27 C -0.201 4.201 28 C -0.189 4.189 29 H 0.060 0.940 30 H 0.210 0.790 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.256 0.744 38 H 0.203 0.797 39 H 0.232 0.768 40 H 0.189 0.811 41 H 0.208 0.792 42 H 0.200 0.800 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.459 -20.658 12.550 25.297 hybrid contribution -0.208 1.987 -0.872 2.180 sum -7.668 -18.671 11.678 23.319 Atomic orbital electron populations 1.69778 1.06269 1.26043 1.59382 1.25450 0.96406 1.00662 1.03786 0.85304 0.77327 0.79676 0.78009 1.20635 1.21908 1.20780 1.19550 0.91310 0.85616 1.41339 0.91335 1.42415 1.05685 1.00536 1.89143 1.20254 0.92678 0.84145 0.96965 1.21392 1.01196 0.97043 0.94231 1.21125 0.97323 1.00663 0.92506 1.21309 0.91528 1.00186 0.86188 1.45782 1.14998 1.57126 1.17100 1.18261 0.87045 0.78083 0.82338 1.90618 1.20027 1.53321 1.79937 1.20296 0.95448 0.98259 0.93860 1.23006 0.91451 0.98038 1.01575 1.23931 1.01518 0.89940 0.86486 1.67948 1.15957 1.09513 1.25176 1.19206 0.89497 0.96330 0.94212 1.22031 0.98503 0.97853 0.98059 1.22918 0.89263 0.96780 0.97080 1.67705 1.37170 1.14562 1.02259 1.24260 0.94623 0.89244 0.95028 1.19762 0.97494 1.01604 0.96553 1.23000 0.99986 1.02760 0.94342 1.23068 0.99641 0.93763 1.02388 0.93974 0.78964 0.96860 0.96633 0.88585 0.91963 0.93300 0.90287 0.74444 0.79723 0.76811 0.81123 0.79188 0.80000 0.87185 0.90522 0.88830 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.30 13.06 21.65 0.28 -57.01 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 8 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -36.15 5.41 -343.44 -1.86 -38.01 16 10 C 0.19 7.27 6.10 86.38 0.53 7.80 16 11 C -0.14 -3.92 1.54 -52.18 -0.08 -4.00 16 12 C -0.08 -1.88 5.20 30.60 0.16 -1.72 16 13 C 0.13 3.07 5.62 86.38 0.49 3.56 16 14 N -0.70 -13.37 5.51 -465.80 -2.57 -15.94 16 15 C 0.56 13.12 7.76 86.83 0.67 13.79 16 16 O -0.56 -17.18 13.61 -3.83 -0.05 -17.23 16 17 C -0.07 -1.32 5.93 -19.70 -0.12 -1.43 16 18 C -0.12 -1.45 9.60 22.69 0.22 -1.23 16 19 C 0.16 1.80 11.14 85.07 0.95 2.75 16 20 N -0.48 -8.69 10.33 -188.55 -1.95 -10.64 16 21 C 0.13 2.85 6.63 40.45 0.27 3.12 16 22 C -0.14 -2.57 10.08 22.42 0.23 -2.34 16 23 C 0.08 1.56 11.06 84.10 0.93 2.49 16 24 N -0.51 -12.81 10.31 -195.81 -2.02 -14.83 16 25 C 0.14 3.70 10.52 85.21 0.90 4.60 16 26 C -0.15 -3.55 5.77 -21.11 -0.12 -3.67 16 27 C -0.16 -4.22 9.90 30.59 0.30 -3.92 16 28 C -0.15 -3.37 9.43 30.59 0.29 -3.08 16 29 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 30 H 0.38 19.35 7.10 -92.71 -0.66 18.69 16 31 H 0.01 0.55 7.93 -2.38 -0.02 0.53 16 32 H 0.02 0.63 8.09 -2.39 -0.02 0.61 16 33 H 0.10 1.71 7.94 -2.39 -0.02 1.69 16 34 H 0.06 1.83 7.41 -2.39 -0.02 1.82 16 35 H 0.05 1.45 7.93 -2.39 -0.02 1.43 16 36 H 0.08 1.77 7.49 -2.39 -0.02 1.75 16 37 H 0.42 5.12 6.65 -92.71 -0.62 4.51 16 38 H 0.19 0.80 6.56 -2.91 -0.02 0.78 16 39 H 0.22 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.19 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.18 5.34 5.09 -2.91 -0.01 5.32 16 43 H 0.11 2.36 8.08 -2.38 -0.02 2.34 16 44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.12 2.03 7.92 -2.39 -0.02 2.01 16 Total: -1.00 -75.64 385.65 0.54 -75.11 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.24 Total: 30.34 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.91 Total: 0.38 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -8.11 Total: -136.43 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -75.64 0.54 -75.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166408565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.060 kcal (2) G-P(sol) polarization free energy of solvation -75.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds