Wall clock time and date at job start Tue Mar 31 2020 23:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00141 * 2 1 4 4 H 1.48492 * 109.47479 * 269.99846 * 3 2 1 5 5 H 1.48501 * 109.47195 * 29.99998 * 3 2 1 6 6 H 1.48500 * 109.46888 * 149.99519 * 3 2 1 7 7 C 1.37876 * 119.99706 * 179.97438 * 2 1 3 8 8 C 1.51273 * 120.84984 * 180.02562 * 7 2 1 9 9 C 1.53242 * 108.47996 * 231.36826 * 8 7 2 10 10 C 1.52951 * 109.40143 * 305.26526 * 9 8 7 11 11 H 1.09007 * 109.41048 * 303.63308 * 10 9 8 12 12 N 1.46504 * 109.41621 * 183.77829 * 10 9 8 13 13 C 1.34780 * 119.99974 * 84.85450 * 12 10 9 14 14 O 1.21611 * 120.00091 * 0.02562 * 13 12 10 15 15 C 1.47403 * 119.99951 * 180.02562 * 13 12 10 16 16 N 1.31625 * 125.86364 * 5.57677 * 15 13 12 17 17 C 1.33098 * 109.09359 * 180.23237 * 16 15 13 18 18 C 1.35564 * 108.35181 * 359.76007 * 17 16 15 19 19 N 1.35402 * 107.16073 * 0.02562 * 18 17 16 20 20 C 1.46501 * 126.44005 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.46967 * 267.84828 * 20 19 18 22 22 C 1.38664 * 120.41819 * 84.09312 * 21 20 19 23 23 C 1.38635 * 118.42135 * 180.27098 * 22 21 20 24 24 C 1.38227 * 119.15868 * 359.52338 * 23 22 21 25 25 N 1.31849 * 120.76354 * 0.48396 * 24 23 22 26 26 C 1.31887 * 121.72904 * 359.74656 * 25 24 23 27 27 C 1.52955 * 109.76320 * 63.70221 * 10 9 8 28 28 C 1.51272 * 120.85218 * 0.02562 * 7 2 1 29 29 H 0.97000 * 119.99453 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.62248 * 351.04242 * 8 7 2 31 31 H 1.09003 * 109.62321 * 111.61251 * 8 7 2 32 32 H 1.09001 * 109.42449 * 185.32222 * 9 8 7 33 33 H 1.08995 * 109.54231 * 65.28410 * 9 8 7 34 34 H 0.96993 * 120.00083 * 264.86091 * 12 10 9 35 35 H 1.07997 * 125.82619 * 179.78488 * 17 16 15 36 36 H 1.07997 * 126.42377 * 180.02562 * 18 17 16 37 37 H 1.09009 * 109.47011 * 147.84962 * 20 19 18 38 38 H 1.08994 * 109.47009 * 27.84970 * 20 19 18 39 39 H 1.08007 * 120.79173 * 359.97438 * 22 21 20 40 40 H 1.08003 * 120.41744 * 179.74766 * 23 22 21 41 41 H 1.08004 * 119.61473 * 180.22723 * 24 23 22 42 42 H 1.08002 * 119.62057 * 179.97438 * 26 25 24 43 43 H 1.09005 * 109.47810 * 56.34494 * 27 10 9 44 44 H 1.08994 * 109.48644 * 176.38346 * 27 10 9 45 45 H 1.09005 * 109.62325 * 8.95894 * 28 7 2 46 46 H 1.08998 * 109.62721 * 248.38762 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 6 3.5171 -1.2166 0.0011 9 6 3.9897 -2.1313 -1.1338 10 6 3.3402 -3.5076 -0.9811 11 1 3.5739 -3.9112 0.0042 12 7 3.8604 -4.4089 -2.0123 13 6 5.0164 -5.0710 -1.8078 14 8 5.6274 -4.9207 -0.7671 15 6 5.5402 -5.9774 -2.8455 16 7 5.0331 -6.1474 -4.0482 17 6 5.7642 -7.0442 -4.7061 18 6 6.7709 -7.4521 -3.8950 19 7 6.6373 -6.7833 -2.7252 20 6 7.5031 -6.9048 -1.5497 21 6 6.9443 -7.9512 -0.6203 22 6 7.2291 -9.2933 -0.8217 23 6 6.6887 -10.2213 0.0551 24 6 5.8977 -9.7802 1.0993 25 7 5.6480 -8.4956 1.2603 26 6 6.1413 -7.5854 0.4432 27 6 1.8232 -3.3833 -1.1328 28 6 1.2677 -2.5152 0.0005 29 1 -0.4849 0.8401 -0.0004 30 1 3.8983 -0.2080 -0.1588 31 1 3.8771 -1.6000 0.9559 32 1 5.0739 -2.2341 -1.0890 33 1 3.7047 -1.6992 -2.0930 34 1 3.3730 -4.5290 -2.8422 35 1 5.5860 -7.3881 -5.7143 36 1 7.5361 -8.1749 -4.1365 37 1 7.5495 -5.9465 -1.0321 38 1 8.5049 -7.1964 -1.8649 39 1 7.8532 -9.6085 -1.6449 40 1 6.8863 -11.2752 -0.0741 41 1 5.4760 -10.4965 1.7889 42 1 5.9144 -6.5422 0.6067 43 1 1.5905 -2.9209 -2.0921 44 1 1.3709 -4.3739 -1.0873 45 1 0.2037 -2.3409 -0.1598 46 1 1.4192 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199402477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:55 Heat of formation + Delta-G solvation = 52.440067 kcal Electronic energy + Delta-G solvation = -29341.675642 eV Core-core repulsion = 25424.755931 eV Total energy + Delta-G solvation = -3916.919710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.46341 -40.34606 -39.29056 -36.76603 -35.34538 -33.71321 -32.53789 -31.74051 -31.47600 -29.94192 -29.61578 -27.32766 -26.94389 -23.90032 -23.74506 -22.65254 -21.87775 -21.55395 -21.21256 -19.87886 -19.40432 -17.91071 -17.38586 -16.62924 -16.44567 -16.30015 -15.91028 -15.64443 -15.15765 -14.43368 -14.37133 -14.22457 -14.05806 -13.86710 -13.56629 -13.54968 -13.36475 -13.12917 -12.81775 -12.70972 -12.27492 -12.05866 -11.98830 -11.69180 -11.01204 -10.81321 -10.71700 -10.43975 -10.22740 -10.19807 -10.09223 -9.97679 -9.89049 -9.63344 -9.58543 -9.38407 -9.02274 -8.91193 -8.69487 -8.45093 -8.31336 -6.08758 -3.99362 0.67042 0.96280 1.32014 2.37869 2.54308 3.28802 3.37916 3.39951 3.40692 3.48010 3.63815 4.11098 4.24227 4.35885 4.40559 4.45288 4.53276 4.61691 4.69711 4.87508 5.07780 5.11755 5.19915 5.23769 5.34381 5.54898 5.70798 5.73065 5.83328 5.87873 6.03585 6.19490 6.38801 6.42557 6.48718 6.50078 6.71424 6.72845 6.74270 6.89669 6.97658 7.09658 7.20885 7.44954 7.57779 7.66644 7.73534 7.74383 7.81005 7.93889 8.37690 8.39748 8.97942 9.56330 11.00811 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.002890 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.811399 B = 9687.185488 C =10522.894984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.489 4.489 8 C -0.012 4.012 9 C -0.114 4.114 10 C 0.155 3.845 11 H 0.082 0.918 12 N -0.692 5.692 13 C 0.601 3.399 14 O -0.547 6.547 15 C 0.153 3.847 16 N -0.446 5.446 17 C -0.027 4.027 18 C -0.036 4.036 19 N -0.413 5.413 20 C 0.145 3.855 21 C -0.171 4.171 22 C -0.057 4.057 23 C -0.182 4.182 24 C 0.107 3.893 25 N -0.483 5.483 26 C 0.133 3.867 27 C -0.115 4.115 28 C 0.014 3.986 29 H 0.264 0.736 30 H 0.031 0.969 31 H 0.020 0.980 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.406 0.594 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.176 0.824 43 H 0.056 0.944 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.036 -20.023 -6.287 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.508 4.508 8 C -0.051 4.051 9 C -0.153 4.153 10 C 0.053 3.947 11 H 0.100 0.900 12 N -0.341 5.341 13 C 0.385 3.615 14 O -0.425 6.425 15 C -0.107 4.107 16 N -0.167 5.167 17 C -0.180 4.180 18 C -0.174 4.174 19 N -0.093 5.093 20 C 0.023 3.977 21 C -0.174 4.174 22 C -0.084 4.084 23 C -0.202 4.202 24 C -0.050 4.050 25 N -0.191 5.191 26 C -0.025 4.025 27 C -0.153 4.153 28 C -0.024 4.024 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.241 0.759 35 H 0.193 0.807 36 H 0.197 0.803 37 H 0.145 0.855 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.174 0.826 42 H 0.193 0.807 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 15.134 -19.061 -4.951 24.837 hybrid contribution 1.553 -0.096 -1.158 1.939 sum 16.686 -19.157 -6.109 26.129 Atomic orbital electron populations 1.69837 1.06146 1.26937 1.49821 1.24839 0.94709 0.98569 0.94519 0.86661 0.80000 0.83296 0.78429 1.20440 1.21676 1.19158 1.20052 0.89371 0.91475 1.49937 1.19717 0.96578 0.94982 0.93775 1.21929 0.97251 0.95027 1.01057 1.21195 0.94785 0.88762 0.89968 0.89974 1.46185 1.22107 1.43794 1.21969 1.16484 0.81816 0.79119 0.84113 1.90684 1.58813 1.66161 1.26884 1.22984 0.90929 1.01084 0.95745 1.70248 1.27333 1.16493 1.02674 1.22403 0.94957 0.99574 1.01098 1.22841 1.04587 1.02983 0.86994 1.45221 1.21815 1.30106 1.12152 1.20921 0.92046 1.01195 0.83581 1.20911 1.02557 0.94787 0.99121 1.21468 0.96854 0.92224 0.97851 1.22121 1.00270 1.00823 0.96962 1.22963 0.93686 0.92835 0.95535 1.67885 1.21095 1.02132 1.27990 1.23387 0.89699 1.00654 0.88711 1.21944 0.91978 0.98846 1.02573 1.19330 0.98745 0.92705 0.91622 0.92594 0.95050 0.96150 0.94418 0.92838 0.75860 0.80679 0.80342 0.85504 0.87980 0.85023 0.84632 0.82596 0.80698 0.92488 0.94435 0.92010 0.97471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 12.73 55.43 0.71 -24.77 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.21 27.27 -169.99 -4.64 16.57 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.21 6.46 56.52 0.37 -5.85 16 7 C -0.49 -12.81 5.51 -98.92 -0.55 -13.36 16 8 C -0.01 -0.29 5.60 -27.48 -0.15 -0.45 16 9 C -0.11 -2.38 5.50 -26.63 -0.15 -2.52 16 10 C 0.16 3.03 2.35 -67.98 -0.16 2.87 16 11 H 0.08 1.73 7.57 -51.92 -0.39 1.33 16 12 N -0.69 -11.75 5.07 -54.93 -0.28 -12.03 16 13 C 0.60 9.96 7.77 -12.53 -0.10 9.87 16 14 O -0.55 -9.61 11.90 5.27 0.06 -9.55 16 15 C 0.15 2.22 7.78 -154.52 -1.20 1.02 16 16 N -0.45 -6.36 10.91 -11.26 -0.12 -6.49 16 17 C -0.03 -0.30 11.85 -17.96 -0.21 -0.51 16 18 C -0.04 -0.33 11.53 -16.93 -0.20 -0.52 16 19 N -0.41 -4.66 2.74 -115.87 -0.32 -4.98 16 20 C 0.14 1.37 5.77 -5.19 -0.03 1.34 16 21 C -0.17 -1.78 5.48 -104.48 -0.57 -2.35 16 22 C -0.06 -0.47 9.88 -39.28 -0.39 -0.86 16 23 C -0.18 -1.45 10.11 -39.44 -0.40 -1.85 16 24 C 0.11 1.07 11.18 -17.55 -0.20 0.87 16 25 N -0.48 -6.51 10.36 -13.25 -0.14 -6.64 16 26 C 0.13 1.76 10.61 -17.55 -0.19 1.57 16 27 C -0.11 -2.38 5.40 -26.66 -0.14 -2.52 16 28 C 0.01 0.34 5.97 -27.51 -0.16 0.18 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.03 0.73 4.78 -51.93 -0.25 0.49 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.41 6.43 8.29 -40.82 -0.34 6.09 16 35 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.40 6.30 -51.92 -0.33 1.07 16 38 H 0.10 0.61 8.13 -51.93 -0.42 0.19 16 39 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 41 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.18 2.63 5.71 -52.49 -0.30 2.33 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -31.76 374.70 -10.18 -41.94 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.22 Total: 5.53 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -4.89 Total: -5.23 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.15 Total: -54.91 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.06 Total: -9.55 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.64 Total: 16.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.76 -10.18 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199402477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.383 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds