Wall clock time and date at job start Tue Mar 31 2020 23:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00141 * 2 1 4 4 H 1.48492 * 109.47479 * 269.99846 * 3 2 1 5 5 H 1.48501 * 109.47195 * 29.99998 * 3 2 1 6 6 H 1.48500 * 109.46888 * 149.99519 * 3 2 1 7 7 C 1.37876 * 119.99706 * 179.97438 * 2 1 3 8 8 C 1.51273 * 120.84984 * 180.02562 * 7 2 1 9 9 C 1.53242 * 108.47996 * 231.36826 * 8 7 2 10 10 C 1.52951 * 109.40143 * 305.26526 * 9 8 7 11 11 H 1.09007 * 109.41048 * 303.63308 * 10 9 8 12 12 N 1.46504 * 109.41621 * 183.77829 * 10 9 8 13 13 C 1.34780 * 119.99974 * 84.85450 * 12 10 9 14 14 O 1.21611 * 120.00091 * 0.02562 * 13 12 10 15 15 C 1.47403 * 119.99951 * 180.02562 * 13 12 10 16 16 N 1.31625 * 125.86364 * 5.57677 * 15 13 12 17 17 C 1.33098 * 109.09359 * 180.23237 * 16 15 13 18 18 C 1.35564 * 108.35181 * 359.76007 * 17 16 15 19 19 N 1.35402 * 107.16073 * 0.02562 * 18 17 16 20 20 C 1.46501 * 126.44005 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.46967 * 267.84828 * 20 19 18 22 22 C 1.38664 * 120.41819 * 84.09312 * 21 20 19 23 23 C 1.38635 * 118.42135 * 180.27098 * 22 21 20 24 24 C 1.38227 * 119.15868 * 359.52338 * 23 22 21 25 25 N 1.31849 * 120.76354 * 0.48396 * 24 23 22 26 26 C 1.31887 * 121.72904 * 359.74656 * 25 24 23 27 27 C 1.52955 * 109.76320 * 63.70221 * 10 9 8 28 28 C 1.51272 * 120.85218 * 0.02562 * 7 2 1 29 29 H 0.97000 * 119.99453 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.62248 * 351.04242 * 8 7 2 31 31 H 1.09003 * 109.62321 * 111.61251 * 8 7 2 32 32 H 1.09001 * 109.42449 * 185.32222 * 9 8 7 33 33 H 1.08995 * 109.54231 * 65.28410 * 9 8 7 34 34 H 0.96993 * 120.00083 * 264.86091 * 12 10 9 35 35 H 1.07997 * 125.82619 * 179.78488 * 17 16 15 36 36 H 1.07997 * 126.42377 * 180.02562 * 18 17 16 37 37 H 1.09009 * 109.47011 * 147.84962 * 20 19 18 38 38 H 1.08994 * 109.47009 * 27.84970 * 20 19 18 39 39 H 1.08007 * 120.79173 * 359.97438 * 22 21 20 40 40 H 1.08003 * 120.41744 * 179.74766 * 23 22 21 41 41 H 1.08004 * 119.61473 * 180.22723 * 24 23 22 42 42 H 1.08002 * 119.62057 * 179.97438 * 26 25 24 43 43 H 1.09005 * 109.47810 * 56.34494 * 27 10 9 44 44 H 1.08994 * 109.48644 * 176.38346 * 27 10 9 45 45 H 1.09005 * 109.62325 * 8.95894 * 28 7 2 46 46 H 1.08998 * 109.62721 * 248.38762 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 6 3.5171 -1.2166 0.0011 9 6 3.9897 -2.1313 -1.1338 10 6 3.3402 -3.5076 -0.9811 11 1 3.5739 -3.9112 0.0042 12 7 3.8604 -4.4089 -2.0123 13 6 5.0164 -5.0710 -1.8078 14 8 5.6274 -4.9207 -0.7671 15 6 5.5402 -5.9774 -2.8455 16 7 5.0331 -6.1474 -4.0482 17 6 5.7642 -7.0442 -4.7061 18 6 6.7709 -7.4521 -3.8950 19 7 6.6373 -6.7833 -2.7252 20 6 7.5031 -6.9048 -1.5497 21 6 6.9443 -7.9512 -0.6203 22 6 7.2291 -9.2933 -0.8217 23 6 6.6887 -10.2213 0.0551 24 6 5.8977 -9.7802 1.0993 25 7 5.6480 -8.4956 1.2603 26 6 6.1413 -7.5854 0.4432 27 6 1.8232 -3.3833 -1.1328 28 6 1.2677 -2.5152 0.0005 29 1 -0.4849 0.8401 -0.0004 30 1 3.8983 -0.2080 -0.1588 31 1 3.8771 -1.6000 0.9559 32 1 5.0739 -2.2341 -1.0890 33 1 3.7047 -1.6992 -2.0930 34 1 3.3730 -4.5290 -2.8422 35 1 5.5860 -7.3881 -5.7143 36 1 7.5361 -8.1749 -4.1365 37 1 7.5495 -5.9465 -1.0321 38 1 8.5049 -7.1964 -1.8649 39 1 7.8532 -9.6085 -1.6449 40 1 6.8863 -11.2752 -0.0741 41 1 5.4760 -10.4965 1.7889 42 1 5.9144 -6.5422 0.6067 43 1 1.5905 -2.9209 -2.0921 44 1 1.3709 -4.3739 -1.0873 45 1 0.2037 -2.3409 -0.1598 46 1 1.4192 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199402477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:54 Heat of formation + Delta-G solvation = 32.642571 kcal Electronic energy + Delta-G solvation = -29342.534126 eV Core-core repulsion = 25424.755931 eV Total energy + Delta-G solvation = -3917.778194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.32573 -41.09507 -40.65774 -38.42402 -36.22778 -35.30817 -33.53754 -33.22137 -32.32631 -31.53659 -30.91246 -28.94845 -27.79800 -25.06625 -24.63950 -23.64835 -23.37254 -23.11267 -22.21422 -21.33214 -20.86680 -18.97229 -18.12820 -17.99670 -17.42111 -17.34050 -17.10621 -16.93381 -16.41711 -16.09233 -15.44604 -15.22696 -15.03748 -14.97018 -14.81955 -14.52848 -14.37966 -14.31050 -14.14357 -13.96901 -13.95327 -13.58064 -13.45532 -12.82301 -12.77811 -12.68111 -12.55749 -11.94846 -11.85795 -11.52996 -11.35984 -11.20759 -11.01044 -10.89088 -10.83573 -10.70687 -10.54477 -10.40276 -10.13131 -10.01388 -9.47240 -8.17599 -6.11941 -0.06684 0.26569 0.35994 1.37995 1.41520 1.49088 1.50445 1.66235 2.29730 2.39710 2.40941 2.83858 3.10408 3.33991 3.40426 3.60153 3.71278 3.85882 3.97563 3.98093 4.01996 4.15872 4.22912 4.41824 4.44204 4.46132 4.53490 4.66229 4.68796 4.77538 4.84002 4.94140 5.04504 5.06937 5.08068 5.09126 5.19785 5.21225 5.28452 5.52368 5.54378 5.63226 5.68612 5.71887 5.74705 5.79919 5.89747 6.33508 6.42216 6.87575 6.93313 6.97285 7.12819 7.46190 8.93264 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.002890 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.811399 B = 9687.185488 C =10522.894984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.025 3.975 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.257 1.257 7 C -0.501 4.501 8 C -0.013 4.013 9 C -0.105 4.105 10 C 0.171 3.829 11 H 0.064 0.936 12 N -0.694 5.694 13 C 0.598 3.402 14 O -0.564 6.564 15 C 0.108 3.892 16 N -0.468 5.468 17 C -0.049 4.049 18 C -0.002 4.002 19 N -0.407 5.407 20 C 0.144 3.856 21 C -0.171 4.171 22 C -0.050 4.050 23 C -0.169 4.169 24 C 0.088 3.912 25 N -0.527 5.527 26 C 0.099 3.901 27 C -0.102 4.102 28 C 0.011 3.989 29 H 0.264 0.736 30 H 0.034 0.966 31 H 0.016 0.984 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.412 0.588 35 H 0.203 0.797 36 H 0.234 0.766 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.141 0.859 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.034 0.966 46 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.452 -23.086 -8.720 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.174 4.174 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.520 4.520 8 C -0.051 4.051 9 C -0.144 4.144 10 C 0.067 3.933 11 H 0.082 0.918 12 N -0.343 5.343 13 C 0.384 3.616 14 O -0.444 6.444 15 C -0.150 4.150 16 N -0.190 5.190 17 C -0.202 4.202 18 C -0.140 4.140 19 N -0.087 5.087 20 C 0.023 3.977 21 C -0.174 4.174 22 C -0.077 4.077 23 C -0.188 4.188 24 C -0.069 4.069 25 N -0.236 5.236 26 C -0.058 4.058 27 C -0.141 4.141 28 C -0.027 4.027 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.248 0.752 35 H 0.220 0.780 36 H 0.250 0.750 37 H 0.119 0.881 38 H 0.167 0.833 39 H 0.194 0.806 40 H 0.193 0.807 41 H 0.194 0.806 42 H 0.159 0.841 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 18.568 -22.122 -7.376 29.809 hybrid contribution 0.545 0.647 -0.406 0.938 sum 19.113 -21.475 -7.782 29.783 Atomic orbital electron populations 1.69963 1.07560 1.27540 1.51748 1.25580 0.95368 1.01698 0.94727 0.85810 0.79153 0.79671 0.78721 1.19713 1.21730 1.18144 1.20591 0.90903 0.91929 1.48566 1.19710 0.94940 0.95828 0.94653 1.21789 0.97665 0.95111 0.99809 1.20728 0.93812 0.88688 0.90076 0.91800 1.45900 1.22867 1.44000 1.21533 1.16802 0.81217 0.79053 0.84537 1.90689 1.59175 1.66662 1.27827 1.22344 0.93478 1.03461 0.95681 1.70171 1.28415 1.17580 1.02869 1.23048 0.95314 0.99268 1.02528 1.23718 1.04101 1.01347 0.84867 1.45378 1.20799 1.29326 1.13239 1.21053 0.93637 1.00000 0.83004 1.20945 1.01880 0.96388 0.98170 1.21954 0.96367 0.90689 0.98653 1.22560 0.98175 1.02803 0.95291 1.23443 0.94476 0.91872 0.97078 1.67749 1.22659 1.03856 1.29311 1.23059 0.92258 0.99474 0.91003 1.21710 0.92857 0.98822 1.00664 1.19273 0.97330 0.93350 0.92751 0.92705 0.94773 0.96563 0.93682 0.92795 0.75174 0.77986 0.74963 0.88067 0.83285 0.80602 0.80736 0.80645 0.84127 0.92575 0.92773 0.94742 0.98325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 12.73 21.45 0.27 -54.72 16 2 C 0.02 1.38 5.46 84.65 0.46 1.84 16 3 Si 0.94 44.07 27.27 68.60 1.87 45.94 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.26 -11.53 6.46 99.48 0.64 -10.88 16 7 C -0.50 -26.95 5.51 -16.17 -0.09 -27.04 16 8 C -0.01 -0.63 5.60 30.11 0.17 -0.46 16 9 C -0.10 -4.43 5.50 30.66 0.17 -4.26 16 10 C 0.17 6.88 2.35 44.96 0.11 6.99 16 11 H 0.06 2.82 7.57 -2.38 -0.02 2.80 16 12 N -0.69 -24.15 5.07 -445.95 -2.26 -26.42 16 13 C 0.60 20.37 7.77 86.66 0.67 21.04 16 14 O -0.56 -20.87 11.90 -4.06 -0.05 -20.92 16 15 C 0.11 3.05 7.78 136.27 1.06 4.11 16 16 N -0.47 -12.66 10.91 -189.53 -2.07 -14.72 16 17 C -0.05 -0.87 11.85 83.88 0.99 0.12 16 18 C 0.00 -0.03 11.53 83.52 0.96 0.94 16 19 N -0.41 -8.05 2.74 -520.49 -1.43 -9.48 16 20 C 0.14 2.38 5.77 85.63 0.49 2.87 16 21 C -0.17 -3.24 5.48 -19.77 -0.11 -3.35 16 22 C -0.05 -0.59 9.88 22.47 0.22 -0.37 16 23 C -0.17 -2.03 10.11 22.36 0.23 -1.80 16 24 C 0.09 1.65 11.18 84.69 0.95 2.60 16 25 N -0.53 -14.68 10.36 -195.84 -2.03 -16.71 16 26 C 0.10 2.73 10.61 84.67 0.90 3.63 16 27 C -0.10 -4.35 5.40 30.64 0.17 -4.18 16 28 C 0.01 0.56 5.97 30.09 0.18 0.74 16 29 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.03 1.59 4.78 -2.39 -0.01 1.58 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.41 13.27 8.29 -92.71 -0.77 12.50 16 35 H 0.20 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.23 0.32 8.06 -2.91 -0.02 0.30 16 37 H 0.10 2.24 6.30 -2.38 -0.01 2.22 16 38 H 0.15 1.01 8.13 -2.39 -0.02 0.99 16 39 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 40 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 41 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 42 H 0.14 4.72 5.71 -2.91 -0.02 4.71 16 43 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.03 1.93 7.07 -2.38 -0.02 1.92 16 46 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -75.12 374.70 2.03 -73.09 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.19 Total: 20.54 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 7.53 Total: 3.40 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -7.51 Total: -122.04 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.92 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.87 Total: 45.94 kcal Total: -75.12 2.03 -73.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199402477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.733 kcal (2) G-P(sol) polarization free energy of solvation -75.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds