Wall clock time and date at job start Tue Mar 31 2020 22:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47258 * 299.99841 * 3 2 1 6 6 H 1.48506 * 109.47147 * 59.99672 * 3 2 1 7 7 C 1.38812 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00275 * 180.27047 * 9 7 2 11 11 C 1.53000 * 109.47484 * 179.72313 * 10 9 7 12 12 H 1.08998 * 109.46960 * 305.00463 * 11 10 9 13 13 C 1.54802 * 109.46950 * 185.00409 * 11 10 9 14 14 N 1.45129 * 109.53665 * 172.12865 * 13 11 10 15 15 C 1.34775 * 118.75400 * 269.25937 * 14 13 11 16 16 O 1.21601 * 120.00178 * 175.30548 * 15 14 13 17 17 C 1.47439 * 120.00015 * 355.30230 * 15 14 13 18 18 C 1.41283 * 126.41264 * 28.57036 * 17 15 14 19 19 N 1.30449 * 108.02211 * 179.85596 * 18 17 15 20 20 N 1.39937 * 108.89266 * 0.40596 * 19 18 17 21 21 C 1.46503 * 125.74798 * 179.73899 * 20 19 18 22 22 C 1.53004 * 109.47381 * 304.99857 * 21 20 19 23 23 F 1.39898 * 109.46951 * 180.02562 * 22 21 20 24 24 C 1.34250 * 108.49538 * 359.74082 * 20 19 18 25 25 C 1.47505 * 122.48739 * 89.27920 * 14 13 11 26 26 C 1.53564 * 111.03026 * 318.37109 * 25 14 13 27 27 C 1.51530 * 109.58155 * 320.01860 * 26 25 14 28 28 O 1.38016 * 109.46532 * 64.99523 * 11 10 9 29 29 H 0.97001 * 120.00098 * 0.02562 * 1 2 3 30 30 H 0.97008 * 120.00016 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47286 * 299.72939 * 10 9 7 32 32 H 1.09008 * 109.46577 * 59.72875 * 10 9 7 33 33 H 1.09006 * 109.45881 * 292.14091 * 13 11 10 34 34 H 1.08992 * 109.46159 * 52.12030 * 13 11 10 35 35 H 1.08004 * 125.98898 * 359.97438 * 18 17 15 36 36 H 1.08993 * 109.47601 * 65.00165 * 21 20 19 37 37 H 1.09011 * 109.46667 * 185.00153 * 21 20 19 38 38 H 1.09002 * 109.46908 * 300.00416 * 22 21 20 39 39 H 1.08998 * 109.46749 * 60.00276 * 22 21 20 40 40 H 1.07999 * 126.29307 * 180.02562 * 24 20 19 41 41 H 1.09007 * 109.16115 * 78.77082 * 25 14 13 42 42 H 1.08996 * 109.16709 * 197.96664 * 25 14 13 43 43 H 1.09004 * 109.45598 * 80.05880 * 26 25 14 44 44 H 1.09008 * 109.45110 * 199.98606 * 26 25 14 45 45 H 1.08999 * 109.59027 * 211.18216 * 27 26 25 46 46 H 1.09000 * 109.59080 * 331.62041 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0071 11 6 1.0640 -4.8197 0.0126 12 1 0.3796 -4.7086 0.8536 13 6 1.8339 -6.1560 0.1468 14 7 0.8908 -7.2422 0.3391 15 6 0.5431 -7.5842 1.5955 16 8 -0.3084 -8.4321 1.7813 17 6 1.1952 -6.9301 2.7448 18 6 1.7348 -5.6247 2.7716 19 7 2.2185 -5.4123 3.9643 20 7 2.0229 -6.5583 4.7433 21 6 2.4309 -6.7233 6.1406 22 6 3.9273 -6.4329 6.2727 23 9 4.3170 -6.5911 7.6070 24 6 1.3983 -7.4808 3.9942 25 6 0.2988 -7.9864 -0.7885 26 6 -0.0922 -7.0371 -1.9306 27 6 -0.6913 -5.7699 -1.3550 28 8 0.3474 -4.8178 -1.1669 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6852 -3.7189 -0.8823 32 1 2.6845 -3.7100 0.8977 33 1 2.4129 -6.3341 -0.7594 34 1 2.5062 -6.1033 1.0030 35 1 1.7434 -4.9245 1.9493 36 1 1.8696 -6.0303 6.7673 37 1 2.2297 -7.7461 6.4595 38 1 4.4886 -7.1259 5.6460 39 1 4.1284 -5.4102 5.9539 40 1 1.1077 -8.4716 4.3111 41 1 1.0235 -8.7118 -1.1583 42 1 -0.5896 -8.5142 -0.4419 43 1 0.7938 -6.7873 -2.5144 44 1 -0.8245 -7.5253 -2.5738 45 1 -1.4331 -5.3697 -2.0462 46 1 -1.1626 -5.9906 -0.3973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200873503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:47 Heat of formation + Delta-G solvation = -10.134774 kcal Electronic energy + Delta-G solvation = -30663.552843 eV Core-core repulsion = 26313.150459 eV Total energy + Delta-G solvation = -4350.402384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.14285 -41.80726 -40.20055 -38.40152 -35.33886 -35.21284 -34.35239 -33.08997 -31.13730 -30.59950 -29.41350 -28.86056 -26.67122 -25.24202 -24.19658 -23.18349 -22.54257 -21.21863 -21.09239 -20.87720 -19.38405 -17.83290 -17.26827 -17.00504 -16.78869 -16.69857 -16.47760 -15.85959 -15.65909 -15.45432 -15.05731 -14.81229 -14.44855 -14.33671 -14.14254 -13.79711 -13.51247 -13.28391 -13.12396 -13.01323 -12.75856 -12.41335 -12.36790 -12.07437 -11.99307 -11.73826 -11.46066 -11.27980 -11.06288 -10.95319 -10.80924 -10.75323 -10.34640 -10.01299 -9.87935 -9.74406 -9.71497 -9.41793 -8.89819 -8.87159 -8.54230 -6.89660 -5.72226 -3.01344 1.32595 1.96658 2.06388 2.90051 3.19182 3.46419 3.51744 3.54154 3.76308 3.89379 4.10167 4.42044 4.44670 4.53466 4.58566 4.64152 4.76302 4.81373 4.89185 4.92241 5.01129 5.12162 5.19522 5.22607 5.33375 5.36308 5.41705 5.52450 5.58908 5.64043 5.72192 5.76245 5.86764 6.01823 6.10969 6.20597 6.26004 6.43542 6.49594 6.51644 6.68636 7.27252 7.36351 7.72940 7.93445 8.13632 8.45197 9.57495 10.13332 10.48883 11.50396 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007421 B = 0.004096 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3771.997969 B = 6835.053071 C =10099.002928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.724 5.724 10 C 0.159 3.841 11 C 0.075 3.925 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.603 5.603 15 C 0.594 3.406 16 O -0.551 6.551 17 C -0.292 4.292 18 C 0.071 3.929 19 N -0.285 5.285 20 N -0.367 5.367 21 C 0.103 3.897 22 C 0.052 3.948 23 F -0.208 7.208 24 C 0.125 3.875 25 C 0.112 3.888 26 C -0.166 4.166 27 C 0.072 3.928 28 O -0.363 6.363 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.212 0.788 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.187 0.813 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -20.581 6.266 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.369 5.369 10 C 0.030 3.970 11 C 0.015 3.985 12 H 0.073 0.927 13 C -0.066 4.066 14 N -0.335 5.335 15 C 0.383 3.617 16 O -0.430 6.430 17 C -0.307 4.307 18 C -0.116 4.116 19 N -0.104 5.104 20 N -0.146 5.146 21 C -0.020 4.020 22 C -0.004 4.004 23 F -0.189 7.189 24 C -0.025 4.025 25 C -0.009 4.009 26 C -0.204 4.204 27 C -0.005 4.005 28 O -0.281 6.281 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.227 0.773 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.204 0.796 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.591 -19.973 7.158 21.708 hybrid contribution -0.352 0.147 -0.291 0.479 sum 4.239 -19.826 6.867 21.406 Atomic orbital electron populations 1.69683 1.05113 1.25467 1.57576 1.24729 0.95477 0.97633 1.02927 0.86136 0.78798 0.84215 0.77136 1.20532 1.21901 1.21932 1.19247 0.91028 0.83997 1.42794 0.91047 1.42220 1.06029 0.99355 1.89276 1.20728 0.92463 0.84890 0.98887 1.22531 0.93958 0.94007 0.88038 0.92735 1.22976 0.92437 0.86821 1.04338 1.47647 1.45113 1.35038 1.05665 1.17382 0.80992 0.81182 0.82106 1.90739 1.32329 1.34417 1.85467 1.20222 1.16910 0.97667 0.95856 1.25269 0.94484 0.95968 0.95910 1.77353 1.24696 1.04626 1.03714 1.48368 1.44672 1.10793 1.10799 1.22301 0.96523 1.05026 0.78104 1.22172 0.93851 1.05376 0.78967 1.92799 1.91865 1.97432 1.36780 1.22871 0.93936 0.95645 0.90046 1.21820 0.99342 0.93733 0.86035 1.22500 1.02783 0.97121 0.97977 1.22164 0.89710 0.88301 1.00290 1.86447 1.48161 1.55788 1.37662 0.93600 0.77811 0.94830 0.94801 0.89173 0.88403 0.77252 0.87954 0.87206 0.89996 0.88623 0.79606 0.91707 0.89002 0.90078 0.89710 0.89118 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.20 5.54 -59.91 -0.33 -18.53 16 10 C 0.16 3.03 5.61 -4.04 -0.02 3.01 16 11 C 0.08 1.20 1.63 -25.78 -0.04 1.16 16 12 H 0.06 0.95 6.88 -51.93 -0.36 0.60 16 13 C 0.06 0.74 4.39 -3.83 -0.02 0.72 16 14 N -0.60 -7.64 2.19 -173.74 -0.38 -8.02 16 15 C 0.59 8.44 7.58 -12.51 -0.09 8.35 16 16 O -0.55 -9.05 16.30 5.28 0.09 -8.96 16 17 C -0.29 -3.83 5.59 -105.06 -0.59 -4.41 16 18 C 0.07 1.00 9.09 -16.98 -0.15 0.84 16 19 N -0.29 -3.94 12.33 30.86 0.38 -3.56 16 20 N -0.37 -3.83 3.65 -60.80 -0.22 -4.05 16 21 C 0.10 0.70 6.94 -4.04 -0.03 0.67 16 22 C 0.05 0.37 7.73 37.16 0.29 0.66 16 23 F -0.21 -1.81 17.36 2.25 0.04 -1.77 16 24 C 0.13 1.31 11.36 -16.57 -0.19 1.13 16 25 C 0.11 1.23 6.18 -3.20 -0.02 1.21 16 26 C -0.17 -1.73 5.78 -27.18 -0.16 -1.89 16 27 C 0.07 0.98 6.38 36.41 0.23 1.21 16 28 O -0.36 -6.16 9.38 -26.54 -0.25 -6.41 16 29 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.39 10.51 7.65 -40.82 -0.31 10.20 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.62 6.95 -51.92 -0.36 0.26 16 33 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.10 1.17 4.71 -51.93 -0.24 0.93 16 35 H 0.21 3.13 2.18 -52.48 -0.11 3.01 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.11 0.43 8.06 -51.92 -0.42 0.01 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.19 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.09 1.07 6.95 -51.93 -0.36 0.71 16 43 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 44 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 45 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.72 7.40 -51.93 -0.38 0.34 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -34.92 372.55 -6.72 -41.64 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.32 Total: 8.80 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.04 Total: 5.43 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.17 Total: -61.75 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.16 Total: -15.37 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.92 -6.72 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200873503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.501 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds