Wall clock time and date at job start Tue Mar 31 2020 22:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47258 * 299.99841 * 3 2 1 6 6 H 1.48506 * 109.47147 * 59.99672 * 3 2 1 7 7 C 1.38812 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00275 * 180.27047 * 9 7 2 11 11 C 1.53000 * 109.47484 * 179.72313 * 10 9 7 12 12 H 1.08998 * 109.46960 * 305.00463 * 11 10 9 13 13 C 1.54802 * 109.46950 * 185.00409 * 11 10 9 14 14 N 1.45129 * 109.53665 * 172.12865 * 13 11 10 15 15 C 1.34775 * 118.75400 * 269.25937 * 14 13 11 16 16 O 1.21601 * 120.00178 * 175.30548 * 15 14 13 17 17 C 1.47439 * 120.00015 * 355.30230 * 15 14 13 18 18 C 1.41283 * 126.41264 * 28.57036 * 17 15 14 19 19 N 1.30449 * 108.02211 * 179.85596 * 18 17 15 20 20 N 1.39937 * 108.89266 * 0.40596 * 19 18 17 21 21 C 1.46503 * 125.74798 * 179.73899 * 20 19 18 22 22 C 1.53004 * 109.47381 * 304.99857 * 21 20 19 23 23 F 1.39898 * 109.46951 * 180.02562 * 22 21 20 24 24 C 1.34250 * 108.49538 * 359.74082 * 20 19 18 25 25 C 1.47505 * 122.48739 * 89.27920 * 14 13 11 26 26 C 1.53564 * 111.03026 * 318.37109 * 25 14 13 27 27 C 1.51530 * 109.58155 * 320.01860 * 26 25 14 28 28 O 1.38016 * 109.46532 * 64.99523 * 11 10 9 29 29 H 0.97001 * 120.00098 * 0.02562 * 1 2 3 30 30 H 0.97008 * 120.00016 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47286 * 299.72939 * 10 9 7 32 32 H 1.09008 * 109.46577 * 59.72875 * 10 9 7 33 33 H 1.09006 * 109.45881 * 292.14091 * 13 11 10 34 34 H 1.08992 * 109.46159 * 52.12030 * 13 11 10 35 35 H 1.08004 * 125.98898 * 359.97438 * 18 17 15 36 36 H 1.08993 * 109.47601 * 65.00165 * 21 20 19 37 37 H 1.09011 * 109.46667 * 185.00153 * 21 20 19 38 38 H 1.09002 * 109.46908 * 300.00416 * 22 21 20 39 39 H 1.08998 * 109.46749 * 60.00276 * 22 21 20 40 40 H 1.07999 * 126.29307 * 180.02562 * 24 20 19 41 41 H 1.09007 * 109.16115 * 78.77082 * 25 14 13 42 42 H 1.08996 * 109.16709 * 197.96664 * 25 14 13 43 43 H 1.09004 * 109.45598 * 80.05880 * 26 25 14 44 44 H 1.09008 * 109.45110 * 199.98606 * 26 25 14 45 45 H 1.08999 * 109.59027 * 211.18216 * 27 26 25 46 46 H 1.09000 * 109.59080 * 331.62041 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0071 11 6 1.0640 -4.8197 0.0126 12 1 0.3796 -4.7086 0.8536 13 6 1.8339 -6.1560 0.1468 14 7 0.8908 -7.2422 0.3391 15 6 0.5431 -7.5842 1.5955 16 8 -0.3084 -8.4321 1.7813 17 6 1.1952 -6.9301 2.7448 18 6 1.7348 -5.6247 2.7716 19 7 2.2185 -5.4123 3.9643 20 7 2.0229 -6.5583 4.7433 21 6 2.4309 -6.7233 6.1406 22 6 3.9273 -6.4329 6.2727 23 9 4.3170 -6.5911 7.6070 24 6 1.3983 -7.4808 3.9942 25 6 0.2988 -7.9864 -0.7885 26 6 -0.0922 -7.0371 -1.9306 27 6 -0.6913 -5.7699 -1.3550 28 8 0.3474 -4.8178 -1.1669 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6852 -3.7189 -0.8823 32 1 2.6845 -3.7100 0.8977 33 1 2.4129 -6.3341 -0.7594 34 1 2.5062 -6.1033 1.0030 35 1 1.7434 -4.9245 1.9493 36 1 1.8696 -6.0303 6.7673 37 1 2.2297 -7.7461 6.4595 38 1 4.4886 -7.1259 5.6460 39 1 4.1284 -5.4102 5.9539 40 1 1.1077 -8.4716 4.3111 41 1 1.0235 -8.7118 -1.1583 42 1 -0.5896 -8.5142 -0.4419 43 1 0.7938 -6.7873 -2.5144 44 1 -0.8245 -7.5253 -2.5738 45 1 -1.4331 -5.3697 -2.0462 46 1 -1.1626 -5.9906 -0.3973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200873503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:46 Heat of formation + Delta-G solvation = -34.244900 kcal Electronic energy + Delta-G solvation = -30664.598336 eV Core-core repulsion = 26313.150459 eV Total energy + Delta-G solvation = -4351.447877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.78350 -42.75909 -41.26042 -39.58569 -36.74302 -36.40277 -35.41147 -34.39965 -32.81450 -31.60276 -30.27140 -30.23590 -27.79157 -26.72341 -25.06556 -24.51933 -23.85058 -22.54712 -21.99272 -21.83929 -20.38304 -19.22383 -18.73199 -18.10419 -17.72181 -17.55818 -17.40691 -16.81622 -16.72352 -16.46919 -16.21981 -16.03670 -15.79078 -15.32176 -15.12783 -15.08375 -14.76091 -14.71912 -14.38883 -13.91894 -13.88904 -13.69927 -13.55143 -13.27793 -12.98647 -12.79911 -12.72839 -12.63244 -12.31845 -12.19862 -12.05934 -11.90190 -11.81475 -11.76791 -11.51706 -10.96382 -10.94926 -10.66536 -10.56763 -9.86296 -9.59428 -8.96509 -7.90354 -5.19222 0.45651 1.01816 1.20560 1.49894 1.50777 1.60776 1.93336 2.15076 2.59303 2.68773 3.11683 3.44262 3.47345 3.58991 3.68332 3.70301 3.80498 3.86182 3.96254 3.97609 4.07182 4.12832 4.13976 4.21400 4.32503 4.34187 4.40301 4.49717 4.51860 4.60756 4.68833 4.76350 4.78935 4.86735 4.88468 5.08865 5.11641 5.20369 5.27004 5.50622 5.53628 5.75813 6.23836 6.30321 6.41266 6.72394 7.08599 7.37345 8.11608 8.34910 9.33596 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007421 B = 0.004096 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3771.997969 B = 6835.053071 C =10099.002928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.157 3.843 11 C 0.088 3.912 12 H 0.034 0.966 13 C 0.074 3.926 14 N -0.601 5.601 15 C 0.592 3.408 16 O -0.578 6.578 17 C -0.317 4.317 18 C 0.062 3.938 19 N -0.316 5.316 20 N -0.357 5.357 21 C 0.097 3.903 22 C 0.056 3.944 23 F -0.215 7.215 24 C 0.145 3.855 25 C 0.110 3.890 26 C -0.153 4.153 27 C 0.067 3.933 28 O -0.390 6.390 29 H 0.249 0.751 30 H 0.373 0.627 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.196 0.804 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.223 0.777 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -22.592 6.571 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.382 5.382 10 C 0.030 3.970 11 C 0.028 3.972 12 H 0.051 0.949 13 C -0.051 4.051 14 N -0.331 5.331 15 C 0.383 3.617 16 O -0.459 6.459 17 C -0.331 4.331 18 C -0.125 4.125 19 N -0.135 5.135 20 N -0.136 5.136 21 C -0.023 4.023 22 C 0.000 4.000 23 F -0.196 7.196 24 C -0.006 4.006 25 C -0.011 4.011 26 C -0.191 4.191 27 C -0.009 4.009 28 O -0.309 6.309 29 H 0.058 0.942 30 H 0.205 0.795 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.213 0.787 36 H 0.123 0.877 37 H 0.167 0.833 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.239 0.761 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.130 0.870 45 H 0.114 0.886 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.023 -22.010 7.459 24.007 hybrid contribution -0.780 0.697 -0.324 1.095 sum 5.242 -21.313 7.135 23.079 Atomic orbital electron populations 1.69849 1.06745 1.25805 1.59755 1.25554 0.96302 1.01084 1.03863 0.85091 0.78434 0.79887 0.76464 1.18677 1.22226 1.22319 1.19699 0.91639 0.85091 1.40724 0.90097 1.42426 1.05606 1.00870 1.89264 1.20890 0.93026 0.83733 0.99325 1.22255 0.93198 0.94679 0.87077 0.94857 1.22772 0.91901 0.84869 1.05531 1.47708 1.44857 1.34666 1.05911 1.17566 0.80609 0.80838 0.82732 1.90716 1.33482 1.35814 1.85892 1.20274 1.18368 0.97642 0.96862 1.25050 0.95248 0.96303 0.95915 1.77274 1.25580 1.06607 1.04057 1.48571 1.43719 1.09690 1.11619 1.22633 0.96115 1.07480 0.76098 1.22124 0.94367 1.04899 0.78562 1.92785 1.91976 1.97423 1.37460 1.23387 0.91917 0.96471 0.88864 1.21982 0.99686 0.93963 0.85495 1.22415 1.03392 0.95369 0.97940 1.22339 0.89291 0.89279 0.99947 1.86376 1.49119 1.57587 1.37833 0.94202 0.79505 0.94423 0.93341 0.87414 0.87595 0.78740 0.87738 0.83342 0.88699 0.90178 0.76076 0.89335 0.89757 0.89764 0.86972 0.88619 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 46.60 29.55 68.60 2.03 48.62 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 7 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 9 N -0.74 -37.98 5.54 -343.45 -1.90 -39.88 16 10 C 0.16 6.05 5.61 86.38 0.48 6.53 16 11 C 0.09 2.86 1.63 31.21 0.05 2.91 16 12 H 0.03 1.23 6.88 -2.39 -0.02 1.21 16 13 C 0.07 1.79 4.39 87.25 0.38 2.17 16 14 N -0.60 -14.53 2.19 -821.84 -1.80 -16.33 16 15 C 0.59 16.32 7.58 86.67 0.66 16.97 16 16 O -0.58 -18.47 16.30 -4.03 -0.07 -18.53 16 17 C -0.32 -8.00 5.59 -20.15 -0.11 -8.11 16 18 C 0.06 1.73 9.09 85.65 0.78 2.51 16 19 N -0.32 -8.59 12.33 -56.28 -0.69 -9.29 16 20 N -0.36 -6.76 3.65 -346.29 -1.26 -8.03 16 21 C 0.10 1.08 6.94 86.38 0.60 1.68 16 22 C 0.06 0.71 7.73 71.98 0.56 1.27 16 23 F -0.22 -3.40 17.36 44.97 0.78 -2.62 16 24 C 0.15 2.70 11.36 84.28 0.96 3.66 16 25 C 0.11 2.18 6.18 86.38 0.53 2.72 16 26 C -0.15 -2.91 5.78 30.30 0.18 -2.73 16 27 C 0.07 1.81 6.38 71.50 0.46 2.27 16 28 O -0.39 -13.37 9.38 -117.88 -1.11 -14.47 16 29 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.37 21.05 7.65 -92.70 -0.71 20.34 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.76 6.95 -2.38 -0.02 1.74 16 33 H 0.11 2.25 8.11 -2.38 -0.02 2.23 16 34 H 0.11 2.44 4.71 -2.39 -0.01 2.43 16 35 H 0.20 5.95 2.18 -2.91 -0.01 5.94 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.15 0.55 8.06 -2.38 -0.02 0.53 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.22 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.08 1.85 6.95 -2.39 -0.02 1.83 16 43 H 0.08 1.60 8.01 -2.38 -0.02 1.58 16 44 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.04 1.06 7.40 -2.39 -0.02 1.04 16 Total: -1.00 -77.08 372.55 3.40 -73.68 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.32 Total: 31.96 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.83 Total: 15.32 kcal Atomic # 7 Polarization: -128.57 SS G_CDS: -5.38 Total: -133.95 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.17 Total: -33.01 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.08 3.40 -73.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200873503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.433 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds