Wall clock time and date at job start Tue Mar 31 2020 22:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47078 * 269.99952 * 3 2 1 5 5 H 1.48504 * 109.46988 * 29.99706 * 3 2 1 6 6 H 1.48504 * 109.47274 * 149.99680 * 3 2 1 7 7 C 1.38816 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99877 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47083 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46966 * 60.01179 * 11 10 9 13 13 C 1.54811 * 109.47069 * 180.02562 * 11 10 9 14 14 N 1.45115 * 109.53204 * 187.89480 * 13 11 10 15 15 C 1.34783 * 118.75637 * 90.70737 * 14 13 11 16 16 O 1.21601 * 119.99874 * 3.71844 * 15 14 13 17 17 C 1.47429 * 120.00019 * 183.71984 * 15 14 13 18 18 C 1.41286 * 126.41514 * 140.26678 * 17 15 14 19 19 N 1.30452 * 108.02431 * 180.02562 * 18 17 15 20 20 N 1.39933 * 108.89268 * 0.02562 * 19 18 17 21 21 C 1.46506 * 125.75101 * 180.26542 * 20 19 18 22 22 C 1.53008 * 109.46845 * 304.68795 * 21 20 19 23 23 F 1.39898 * 109.46887 * 179.97438 * 22 21 20 24 24 C 1.34252 * 108.49704 * 359.97438 * 20 19 18 25 25 C 1.47508 * 122.48783 * 270.98659 * 14 13 11 26 26 C 1.53199 * 111.23941 * 41.23136 * 25 14 13 27 27 C 1.51544 * 109.42752 * 40.26366 * 26 25 14 28 28 O 1.38013 * 109.47055 * 300.01171 * 11 10 9 29 29 H 0.97003 * 119.99985 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99818 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47176 * 59.99629 * 10 9 7 32 32 H 1.08998 * 109.47235 * 300.00298 * 10 9 7 33 33 H 1.08997 * 109.46342 * 67.87714 * 13 11 10 34 34 H 1.09001 * 109.45767 * 307.91432 * 13 11 10 35 35 H 1.08002 * 125.98840 * 0.02562 * 18 17 15 36 36 H 1.08996 * 109.47171 * 64.68564 * 21 20 19 37 37 H 1.08999 * 109.47194 * 184.69268 * 21 20 19 38 38 H 1.08999 * 109.46637 * 300.00162 * 22 21 20 39 39 H 1.08999 * 109.46838 * 60.00256 * 22 21 20 40 40 H 1.08000 * 126.29777 * 180.02562 * 24 20 19 41 41 H 1.09000 * 109.16838 * 161.75427 * 25 14 13 42 42 H 1.08997 * 109.16280 * 280.94840 * 25 14 13 43 43 H 1.09001 * 109.60564 * 280.23360 * 26 25 14 44 44 H 1.08996 * 109.42805 * 160.19368 * 26 25 14 45 45 H 1.09001 * 109.58559 * 148.72333 * 27 26 25 46 46 H 1.08995 * 109.58564 * 28.29263 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4370 -4.7622 -0.8887 13 6 1.8379 -6.1603 0.0018 14 7 0.9073 -7.2580 -0.1854 15 6 0.6430 -7.6774 -1.4388 16 8 1.2311 -7.1838 -2.3817 17 6 -0.3591 -8.7345 -1.6665 18 6 -1.3032 -8.7830 -2.7164 19 7 -2.0096 -9.8705 -2.5741 20 7 -1.5582 -10.5592 -1.4427 21 6 -2.0902 -11.8305 -0.9456 22 6 -3.5978 -11.6990 -0.7196 23 9 -4.1059 -12.9131 -0.2455 24 6 -0.5512 -9.8618 -0.8931 25 6 0.2351 -7.9281 0.9437 26 6 -0.2245 -6.9147 1.9966 27 6 -0.7808 -5.6864 1.3050 28 8 0.2707 -4.7461 1.1282 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7145 -0.8894 33 1 2.3547 -6.2809 0.9539 34 1 2.5664 -6.1594 -0.8090 35 1 -1.4197 -8.0486 -3.4996 36 1 -1.8997 -12.6152 -1.6777 37 1 -1.6027 -12.0853 -0.0046 38 1 -3.7882 -10.9142 0.0125 39 1 -4.0853 -11.4442 -1.6606 40 1 0.0062 -10.1328 -0.0087 41 1 -0.6313 -8.4746 0.5711 42 1 0.9280 -8.6306 1.4067 43 1 0.6212 -6.6276 2.6215 44 1 -0.9992 -7.3636 2.6181 45 1 -1.5661 -5.2455 1.9191 46 1 -1.1878 -5.9669 0.3336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200873504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:49 Heat of formation + Delta-G solvation = -18.795713 kcal Electronic energy + Delta-G solvation = -30040.593450 eV Core-core repulsion = 25689.815500 eV Total energy + Delta-G solvation = -4350.777950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.34231 -41.95225 -40.23200 -38.28577 -35.69001 -34.73206 -34.53691 -32.87264 -31.23889 -30.87237 -29.85125 -28.48950 -26.65057 -25.32059 -24.42216 -23.31995 -22.20590 -21.44091 -21.24827 -20.88540 -19.59642 -17.75497 -17.29590 -17.08711 -17.06515 -16.44810 -16.33659 -16.17731 -15.80002 -15.67471 -15.14909 -14.80173 -14.60581 -14.44022 -14.17769 -13.78760 -13.62967 -13.45385 -13.24616 -13.03207 -12.92647 -12.63573 -12.26872 -12.18295 -11.95279 -11.72160 -11.63078 -11.37602 -11.22003 -10.94460 -10.78330 -10.73660 -10.25329 -10.05261 -10.01344 -9.88339 -9.63277 -9.37496 -9.05025 -8.79062 -8.53833 -6.80385 -5.65702 -2.93576 1.09593 1.72222 1.92983 2.77007 3.11059 3.50587 3.52596 3.55016 3.57037 3.87562 3.98495 4.09714 4.22779 4.32592 4.43189 4.58028 4.63478 4.66305 4.69035 4.71984 4.93322 5.01149 5.12943 5.19620 5.27505 5.33921 5.38481 5.45121 5.48669 5.63264 5.67410 5.86162 5.98194 6.01944 6.04312 6.12407 6.24771 6.38116 6.52680 6.70662 6.82792 7.07831 7.23855 7.78240 8.04097 8.13260 8.52780 9.64252 10.23158 10.59198 11.57296 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.002259 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.713150 B =12391.450797 C =12580.552371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.089 3.911 12 H 0.051 0.949 13 C 0.082 3.918 14 N -0.604 5.604 15 C 0.585 3.415 16 O -0.529 6.529 17 C -0.275 4.275 18 C 0.109 3.891 19 N -0.297 5.297 20 N -0.365 5.365 21 C 0.102 3.898 22 C 0.053 3.947 23 F -0.207 7.207 24 C 0.094 3.906 25 C 0.097 3.903 26 C -0.167 4.167 27 C 0.074 3.926 28 O -0.367 6.367 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.196 0.804 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.187 0.813 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 -29.062 2.741 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.029 3.971 12 H 0.069 0.931 13 C -0.042 4.042 14 N -0.337 5.337 15 C 0.373 3.627 16 O -0.405 6.405 17 C -0.290 4.290 18 C -0.079 4.079 19 N -0.116 5.116 20 N -0.144 5.144 21 C -0.020 4.020 22 C -0.003 4.003 23 F -0.188 7.188 24 C -0.055 4.055 25 C -0.025 4.025 26 C -0.205 4.205 27 C -0.003 4.003 28 O -0.285 6.285 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.213 0.787 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.203 0.797 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.747 -29.426 1.979 30.047 hybrid contribution 0.729 0.981 0.307 1.260 sum -5.017 -28.445 2.286 28.975 Atomic orbital electron populations 1.69678 1.05096 1.25432 1.57947 1.24735 0.95515 0.97614 1.03278 0.86185 0.78606 0.83927 0.77451 1.21799 1.21862 1.20803 1.19238 0.90994 0.84154 1.42325 0.91189 1.42210 1.06060 0.99468 1.89220 1.20617 0.92378 0.84715 0.98522 1.22281 0.92545 0.94007 0.88305 0.93069 1.22444 0.92437 0.85817 1.03465 1.47761 1.44961 1.35167 1.05819 1.17444 0.81211 0.81336 0.82738 1.90824 1.50233 1.57969 1.41432 1.20370 1.06535 1.00128 1.01993 1.24064 0.91643 0.94928 0.97221 1.77235 1.23673 1.08136 1.02572 1.48252 1.26490 1.18607 1.21098 1.22314 0.95239 0.82695 1.01745 1.22160 0.92605 0.83331 1.02226 1.92810 1.88098 1.47432 1.90435 1.23219 0.91626 0.92271 0.98426 1.22218 0.97327 0.95390 0.87583 1.22450 1.02679 0.97031 0.98344 1.22100 0.89914 0.88922 0.99386 1.86444 1.44495 1.54315 1.43213 0.93647 0.77872 0.95608 0.94737 0.89823 0.88593 0.78735 0.88072 0.87106 0.89828 0.88881 0.79659 0.89542 0.91652 0.89866 0.89880 0.89378 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.06 55.49 0.72 -28.53 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -19.51 5.49 -59.91 -0.33 -19.84 16 10 C 0.17 3.54 5.95 -4.05 -0.02 3.52 16 11 C 0.09 1.58 2.73 -25.78 -0.07 1.51 16 12 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 13 C 0.08 1.15 4.90 -3.83 -0.02 1.13 16 14 N -0.60 -7.15 2.20 -173.97 -0.38 -7.54 16 15 C 0.59 7.87 7.54 -12.51 -0.09 7.77 16 16 O -0.53 -9.31 16.50 5.28 0.09 -9.22 16 17 C -0.28 -2.87 5.32 -105.07 -0.56 -3.43 16 18 C 0.11 1.14 12.01 -16.98 -0.20 0.94 16 19 N -0.30 -2.88 12.34 30.86 0.38 -2.50 16 20 N -0.36 -2.52 3.65 -60.80 -0.22 -2.74 16 21 C 0.10 0.38 6.94 -4.03 -0.03 0.35 16 22 C 0.05 0.23 7.73 37.16 0.29 0.52 16 23 F -0.21 -1.30 17.36 2.25 0.04 -1.26 16 24 C 0.09 0.65 8.92 -16.56 -0.15 0.50 16 25 C 0.10 0.77 4.87 -3.39 -0.02 0.75 16 26 C -0.17 -1.50 5.78 -27.37 -0.16 -1.66 16 27 C 0.07 0.96 6.37 36.42 0.23 1.19 16 28 O -0.37 -6.50 9.18 -26.53 -0.24 -6.74 16 29 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.39 11.10 7.53 -40.82 -0.31 10.80 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.05 8.11 -51.93 -0.42 0.62 16 34 H 0.10 1.44 7.22 -51.93 -0.38 1.06 16 35 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 0.12 8.06 -51.93 -0.42 -0.30 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.19 0.64 6.78 -52.49 -0.36 0.28 16 41 H 0.09 0.56 4.52 -51.93 -0.23 0.33 16 42 H 0.07 0.37 8.06 -51.93 -0.42 -0.05 16 43 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -37.29 380.22 -6.97 -44.26 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.68 Total: 4.83 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.05 Total: 5.49 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.17 Total: -61.14 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.16 Total: -15.96 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.29 -6.97 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200873504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.466 kcal (2) G-P(sol) polarization free energy of solvation -37.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds