Wall clock time and date at job start Tue Mar 31 2020 22:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47078 * 269.99952 * 3 2 1 5 5 H 1.48504 * 109.46988 * 29.99706 * 3 2 1 6 6 H 1.48504 * 109.47274 * 149.99680 * 3 2 1 7 7 C 1.38816 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99877 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47083 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46966 * 60.01179 * 11 10 9 13 13 C 1.54811 * 109.47069 * 180.02562 * 11 10 9 14 14 N 1.45115 * 109.53204 * 187.89480 * 13 11 10 15 15 C 1.34783 * 118.75637 * 90.70737 * 14 13 11 16 16 O 1.21601 * 119.99874 * 3.71844 * 15 14 13 17 17 C 1.47429 * 120.00019 * 183.71984 * 15 14 13 18 18 C 1.41286 * 126.41514 * 140.26678 * 17 15 14 19 19 N 1.30452 * 108.02431 * 180.02562 * 18 17 15 20 20 N 1.39933 * 108.89268 * 0.02562 * 19 18 17 21 21 C 1.46506 * 125.75101 * 180.26542 * 20 19 18 22 22 C 1.53008 * 109.46845 * 304.68795 * 21 20 19 23 23 F 1.39898 * 109.46887 * 179.97438 * 22 21 20 24 24 C 1.34252 * 108.49704 * 359.97438 * 20 19 18 25 25 C 1.47508 * 122.48783 * 270.98659 * 14 13 11 26 26 C 1.53199 * 111.23941 * 41.23136 * 25 14 13 27 27 C 1.51544 * 109.42752 * 40.26366 * 26 25 14 28 28 O 1.38013 * 109.47055 * 300.01171 * 11 10 9 29 29 H 0.97003 * 119.99985 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99818 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47176 * 59.99629 * 10 9 7 32 32 H 1.08998 * 109.47235 * 300.00298 * 10 9 7 33 33 H 1.08997 * 109.46342 * 67.87714 * 13 11 10 34 34 H 1.09001 * 109.45767 * 307.91432 * 13 11 10 35 35 H 1.08002 * 125.98840 * 0.02562 * 18 17 15 36 36 H 1.08996 * 109.47171 * 64.68564 * 21 20 19 37 37 H 1.08999 * 109.47194 * 184.69268 * 21 20 19 38 38 H 1.08999 * 109.46637 * 300.00162 * 22 21 20 39 39 H 1.08999 * 109.46838 * 60.00256 * 22 21 20 40 40 H 1.08000 * 126.29777 * 180.02562 * 24 20 19 41 41 H 1.09000 * 109.16838 * 161.75427 * 25 14 13 42 42 H 1.08997 * 109.16280 * 280.94840 * 25 14 13 43 43 H 1.09001 * 109.60564 * 280.23360 * 26 25 14 44 44 H 1.08996 * 109.42805 * 160.19368 * 26 25 14 45 45 H 1.09001 * 109.58559 * 148.72333 * 27 26 25 46 46 H 1.08995 * 109.58564 * 28.29263 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4370 -4.7622 -0.8887 13 6 1.8379 -6.1603 0.0018 14 7 0.9073 -7.2580 -0.1854 15 6 0.6430 -7.6774 -1.4388 16 8 1.2311 -7.1838 -2.3817 17 6 -0.3591 -8.7345 -1.6665 18 6 -1.3032 -8.7830 -2.7164 19 7 -2.0096 -9.8705 -2.5741 20 7 -1.5582 -10.5592 -1.4427 21 6 -2.0902 -11.8305 -0.9456 22 6 -3.5978 -11.6990 -0.7196 23 9 -4.1059 -12.9131 -0.2455 24 6 -0.5512 -9.8618 -0.8931 25 6 0.2351 -7.9281 0.9437 26 6 -0.2245 -6.9147 1.9966 27 6 -0.7808 -5.6864 1.3050 28 8 0.2707 -4.7461 1.1282 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7145 -0.8894 33 1 2.3547 -6.2809 0.9539 34 1 2.5664 -6.1594 -0.8090 35 1 -1.4197 -8.0486 -3.4996 36 1 -1.8997 -12.6152 -1.6777 37 1 -1.6027 -12.0853 -0.0046 38 1 -3.7882 -10.9142 0.0125 39 1 -4.0853 -11.4442 -1.6606 40 1 0.0062 -10.1328 -0.0087 41 1 -0.6313 -8.4746 0.5711 42 1 0.9280 -8.6306 1.4067 43 1 0.6212 -6.6276 2.6215 44 1 -0.9992 -7.3636 2.6181 45 1 -1.5661 -5.2455 1.9191 46 1 -1.1878 -5.9669 0.3336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200873504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:49 Heat of formation + Delta-G solvation = -45.722497 kcal Electronic energy + Delta-G solvation = -30041.761083 eV Core-core repulsion = 25689.815500 eV Total energy + Delta-G solvation = -4351.945583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.75063 -42.64618 -41.26037 -39.46792 -36.91772 -36.21661 -35.21732 -34.31834 -32.65944 -31.98097 -30.56766 -29.74218 -27.70783 -26.74685 -25.07329 -24.69468 -23.44502 -22.38988 -22.23155 -21.84299 -20.39141 -19.24133 -18.55113 -17.95648 -17.64207 -17.55323 -17.40074 -16.95753 -16.56963 -16.46447 -16.31056 -15.91513 -15.78417 -15.33349 -15.14912 -15.02112 -14.75066 -14.68744 -14.38624 -14.07959 -13.86553 -13.77929 -13.56938 -13.19740 -13.08018 -12.76047 -12.63519 -12.58389 -12.30289 -12.19212 -12.10295 -11.95674 -11.81632 -11.73514 -11.45185 -11.01908 -10.96319 -10.62391 -10.52365 -9.77945 -9.58312 -8.99757 -7.92961 -5.22559 0.49175 1.10253 1.22645 1.47150 1.50580 1.58859 1.84818 2.23935 2.57372 2.74827 3.11528 3.40376 3.52617 3.64412 3.68683 3.69462 3.88550 3.89409 4.00850 4.03365 4.11132 4.17095 4.18218 4.27536 4.32787 4.41729 4.49730 4.52910 4.55702 4.61262 4.72649 4.75100 4.79348 4.86169 4.90863 5.11937 5.15061 5.23070 5.29653 5.48473 5.55484 5.77378 6.27327 6.28576 6.45175 6.77716 7.15681 7.33845 8.08815 8.33806 9.31092 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.002259 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.713150 B =12391.450797 C =12580.552371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.740 5.740 10 C 0.162 3.838 11 C 0.104 3.896 12 H 0.017 0.983 13 C 0.096 3.904 14 N -0.601 5.601 15 C 0.583 3.417 16 O -0.586 6.586 17 C -0.306 4.306 18 C 0.092 3.908 19 N -0.316 5.316 20 N -0.355 5.355 21 C 0.098 3.902 22 C 0.054 3.946 23 F -0.217 7.217 24 C 0.127 3.873 25 C 0.092 3.908 26 C -0.156 4.156 27 C 0.064 3.936 28 O -0.396 6.396 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.186 0.814 36 H 0.107 0.893 37 H 0.151 0.849 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.233 0.767 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -31.826 5.150 32.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.035 3.965 11 C 0.044 3.956 12 H 0.035 0.965 13 C -0.029 4.029 14 N -0.332 5.332 15 C 0.373 3.627 16 O -0.466 6.466 17 C -0.321 4.321 18 C -0.095 4.095 19 N -0.136 5.136 20 N -0.134 5.134 21 C -0.022 4.022 22 C -0.002 4.002 23 F -0.198 7.198 24 C -0.024 4.024 25 C -0.028 4.028 26 C -0.194 4.194 27 C -0.012 4.012 28 O -0.315 6.315 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.203 0.797 36 H 0.125 0.875 37 H 0.169 0.831 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.249 0.751 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.109 0.891 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.054 -32.262 4.415 32.953 hybrid contribution 0.421 1.726 -0.407 1.822 sum -4.633 -30.537 4.008 31.145 Atomic orbital electron populations 1.69856 1.06806 1.26036 1.59565 1.25661 0.96479 1.01363 1.03695 0.85054 0.77714 0.79021 0.77436 1.21424 1.22035 1.19104 1.19698 0.91608 0.85245 1.41202 0.90330 1.42422 1.05634 1.00946 1.89266 1.20774 0.93148 0.84063 0.98532 1.21896 0.91778 0.94782 0.87141 0.96547 1.22116 0.92067 0.84607 1.04073 1.47834 1.44469 1.34211 1.06706 1.17899 0.80938 0.81448 0.82439 1.90786 1.52398 1.60172 1.43256 1.20160 1.06950 1.01280 1.03757 1.24070 0.92425 0.95396 0.97618 1.77200 1.24129 1.08087 1.04180 1.48500 1.25999 1.19002 1.19908 1.22644 0.94844 0.81062 1.03668 1.22150 0.93102 0.83012 1.01907 1.92792 1.88333 1.48157 1.90503 1.23728 0.90407 0.90063 0.98212 1.22598 0.98794 0.95394 0.86062 1.22377 1.03410 0.95171 0.98444 1.22390 0.89127 0.90160 0.99549 1.86360 1.45716 1.56791 1.42616 0.94044 0.79513 0.94703 0.94781 0.87433 0.90005 0.79675 0.87523 0.83105 0.88849 0.90197 0.75115 0.87643 0.87522 0.90314 0.86166 0.89124 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.67 13.06 21.65 0.28 -62.38 16 2 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 3 Si 0.98 48.02 29.55 68.60 2.03 50.05 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.25 -14.59 9.99 84.03 0.84 -13.75 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.74 -41.25 5.49 -343.46 -1.88 -43.14 16 10 C 0.16 7.12 5.95 86.38 0.51 7.64 16 11 C 0.10 3.85 2.73 31.21 0.09 3.93 16 12 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 13 C 0.10 2.65 4.90 87.26 0.43 3.08 16 14 N -0.60 -13.30 2.20 -822.56 -1.81 -15.11 16 15 C 0.58 15.63 7.54 86.66 0.65 16.28 16 16 O -0.59 -21.77 16.50 -4.04 -0.07 -21.83 16 17 C -0.31 -6.04 5.32 -20.15 -0.11 -6.14 16 18 C 0.09 1.97 12.01 85.65 1.03 3.00 16 19 N -0.32 -5.85 12.34 -56.27 -0.69 -6.54 16 20 N -0.36 -3.77 3.65 -346.28 -1.26 -5.03 16 21 C 0.10 0.34 6.94 86.38 0.60 0.93 16 22 C 0.05 0.33 7.73 71.98 0.56 0.89 16 23 F -0.22 -2.22 17.36 44.97 0.78 -1.44 16 24 C 0.13 1.24 8.92 84.28 0.75 1.99 16 25 C 0.09 1.06 4.87 86.25 0.42 1.48 16 26 C -0.16 -2.24 5.78 30.18 0.17 -2.06 16 27 C 0.06 1.61 6.37 71.50 0.46 2.06 16 28 O -0.40 -14.23 9.18 -117.84 -1.08 -15.31 16 29 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.37 22.49 7.53 -92.71 -0.70 21.79 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 2.46 8.11 -2.39 -0.02 2.44 16 34 H 0.08 2.51 7.22 -2.39 -0.02 2.49 16 35 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.15 -0.61 8.06 -2.39 -0.02 -0.63 16 38 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.23 -0.01 6.78 -2.91 -0.02 -0.03 16 41 H 0.11 0.83 4.52 -2.39 -0.01 0.82 16 42 H 0.11 0.49 8.06 -2.39 -0.02 0.47 16 43 H 0.08 1.28 8.01 -2.39 -0.02 1.26 16 44 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.04 1.01 7.39 -2.39 -0.02 1.00 16 Total: -1.00 -86.71 380.22 3.46 -83.24 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.31 Total: 22.55 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.87 Total: 14.93 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -5.37 Total: -132.20 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.15 Total: -37.14 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.78 Total: -1.44 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -86.71 3.46 -83.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200873504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.520 kcal (2) G-P(sol) polarization free energy of solvation -86.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds