Wall clock time and date at job start Tue Mar 31 2020 22:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48501 * 109.46962 * 269.99803 * 3 2 1 5 5 H 1.48496 * 109.46976 * 29.99772 * 3 2 1 6 6 H 1.48505 * 109.46821 * 150.00055 * 3 2 1 7 7 C 1.38813 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99762 * 156.87070 * 7 2 1 9 9 N 1.36933 * 120.00173 * 336.87533 * 7 2 1 10 10 C 1.46502 * 120.00274 * 145.58265 * 9 7 2 11 11 C 1.53003 * 109.47004 * 84.21994 * 10 9 7 12 12 C 1.52995 * 109.47213 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47566 * 180.02562 * 12 11 10 14 14 C 1.34775 * 120.00532 * 180.02562 * 13 12 11 15 15 O 1.21513 * 119.99710 * 359.97438 * 14 13 12 16 16 C 1.48167 * 120.00142 * 179.97438 * 14 13 12 17 17 C 1.39309 * 119.72393 * 179.97438 * 16 14 13 18 18 C 1.38591 * 119.06079 * 180.02562 * 17 16 14 19 19 C 1.38627 * 118.48813 * 359.97438 * 18 17 16 20 20 C 1.38561 * 119.35146 * 0.26013 * 19 18 17 21 21 N 1.31528 * 120.90249 * 359.49451 * 20 19 18 22 22 C 1.46503 * 120.00013 * 325.58653 * 9 7 2 23 23 C 1.50703 * 109.46715 * 270.00011 * 22 9 7 24 24 C 1.38680 * 120.41797 * 269.72046 * 23 22 9 25 25 C 1.38621 * 118.41709 * 179.78380 * 24 23 22 26 26 C 1.38229 * 119.16568 * 0.51484 * 25 24 23 27 27 N 1.31856 * 120.75928 * 359.72270 * 26 25 24 28 28 C 1.31878 * 121.72730 * 0.02562 * 27 26 25 29 29 H 0.96999 * 120.00117 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47107 * 324.22241 * 10 9 7 31 31 H 1.08996 * 109.47279 * 204.22162 * 10 9 7 32 32 H 1.08998 * 109.46987 * 60.00173 * 11 10 9 33 33 H 1.08996 * 109.47240 * 300.00192 * 11 10 9 34 34 H 1.08998 * 109.47160 * 60.00087 * 12 11 10 35 35 H 1.09006 * 109.47003 * 299.99998 * 12 11 10 36 36 H 0.97004 * 119.99790 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.46868 * 0.02562 * 17 16 14 38 38 H 1.07994 * 120.75546 * 180.02562 * 18 17 16 39 39 H 1.07999 * 120.32320 * 179.97438 * 19 18 17 40 40 H 1.07995 * 119.54761 * 179.74317 * 20 19 18 41 41 H 1.09000 * 109.47074 * 29.99602 * 22 9 7 42 42 H 1.08998 * 109.47656 * 150.00300 * 22 9 7 43 43 H 1.08000 * 120.78737 * 0.02562 * 24 23 22 44 44 H 1.08002 * 120.41632 * 180.21910 * 25 24 23 45 45 H 1.07998 * 119.61739 * 179.74906 * 26 25 24 46 46 H 1.08004 * 119.61497 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0252 -1.2399 -0.3668 9 7 1.4081 -2.3402 0.4668 10 6 1.7121 -3.6345 -0.1485 11 6 2.9861 -4.2088 0.4746 12 6 3.3039 -5.5602 -0.1684 13 7 4.5233 -6.1104 0.4286 14 6 4.9982 -7.3018 0.0144 15 8 4.4146 -7.9198 -0.8539 16 6 6.2319 -7.8579 0.6178 17 6 6.7174 -9.0901 0.1858 18 6 7.8721 -9.5975 0.7600 19 6 8.5018 -8.8544 1.7465 20 6 7.9600 -7.6384 2.1306 21 7 6.8651 -7.1780 1.5656 22 6 0.4599 -2.2634 1.5809 23 6 1.2010 -2.4242 2.8832 24 6 1.3809 -3.6824 3.4380 25 6 2.0728 -3.7827 4.6350 26 6 2.5477 -2.6325 5.2370 27 7 2.3536 -1.4519 4.6830 28 6 1.7044 -1.3192 3.5427 29 1 -0.4850 0.8400 -0.0004 30 1 1.8598 -3.5016 -1.2202 31 1 0.8830 -4.3213 0.0215 32 1 2.8383 -4.3417 1.5463 33 1 3.8152 -3.5220 0.3045 34 1 3.4518 -5.4269 -1.2400 35 1 2.4748 -6.2473 0.0013 36 1 4.9894 -5.6168 1.1215 37 1 6.2012 -9.6420 -0.5858 38 1 8.2728 -10.5498 0.4455 39 1 9.4032 -9.2219 2.2142 40 1 8.4456 -7.0588 2.9017 41 1 -0.0415 -1.2957 1.5652 42 1 -0.2802 -3.0578 1.4836 43 1 0.9946 -4.5634 2.9471 44 1 2.2347 -4.7469 5.0938 45 1 3.0842 -2.7019 6.1718 46 1 1.5646 -0.3354 3.1195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230645451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:47 Heat of formation + Delta-G solvation = 53.836323 kcal Electronic energy + Delta-G solvation = -28492.062499 eV Core-core repulsion = 24575.203335 eV Total energy + Delta-G solvation = -3916.859164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77929 -39.49940 -39.00780 -36.47519 -35.01340 -33.07102 -32.20064 -32.09597 -31.59810 -31.11630 -29.62701 -26.12700 -25.76949 -24.39164 -23.76086 -22.85856 -22.50830 -21.19219 -20.85810 -20.20650 -18.20647 -17.02851 -16.85892 -16.48868 -16.27671 -15.71094 -15.62646 -15.45171 -15.14603 -14.84949 -14.57981 -14.34932 -13.98113 -13.78313 -13.58332 -13.34135 -13.27021 -13.01725 -12.77688 -12.48340 -12.31018 -12.06747 -11.78912 -11.28239 -11.15629 -11.04218 -10.76727 -10.65525 -10.42133 -10.34040 -10.16894 -10.10357 -9.99674 -9.78271 -9.56027 -9.14260 -8.95578 -8.88801 -8.57205 -8.25666 -6.76709 -5.92566 -3.45697 0.35480 0.86031 1.76386 1.89791 2.61385 3.07850 3.31307 3.40549 3.45255 3.62736 3.91007 4.35705 4.44011 4.47942 4.54792 4.62759 4.71225 5.04396 5.08188 5.16852 5.24449 5.32229 5.36915 5.44228 5.55080 5.60562 5.67597 5.71684 5.74913 5.83992 5.86666 6.06064 6.12434 6.17836 6.21287 6.39504 6.41298 6.54104 6.58219 6.72256 6.74385 6.96350 7.04296 7.31730 7.34494 7.53829 7.62068 7.72303 8.14872 8.36238 8.60143 9.03968 9.66942 10.22256 11.08099 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.002809 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.086879 B = 9965.093407 C =10919.786871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.014 3.986 3 Si 0.891 3.109 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.258 4.258 8 H 0.062 0.938 9 N -0.572 5.572 10 C 0.153 3.847 11 C -0.153 4.153 12 C 0.118 3.882 13 N -0.703 5.703 14 C 0.565 3.435 15 O -0.538 6.538 16 C 0.082 3.918 17 C -0.114 4.114 18 C -0.083 4.083 19 C -0.154 4.154 20 C 0.098 3.902 21 N -0.458 5.458 22 C 0.172 3.828 23 C -0.116 4.116 24 C -0.083 4.083 25 C -0.180 4.180 26 C 0.069 3.931 27 N -0.492 5.492 28 C 0.112 3.888 29 H 0.257 0.743 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.111 0.889 42 H 0.037 0.963 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.141 0.859 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.964 -16.646 5.927 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.187 4.187 3 Si 0.719 3.281 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.388 4.388 8 H 0.080 0.920 9 N -0.289 5.289 10 C 0.025 3.975 11 C -0.194 4.194 12 C -0.005 4.005 13 N -0.353 5.353 14 C 0.349 3.651 15 O -0.415 6.415 16 C -0.056 4.056 17 C -0.135 4.135 18 C -0.109 4.109 19 C -0.174 4.174 20 C -0.061 4.061 21 N -0.170 5.170 22 C 0.046 3.954 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.201 4.201 26 C -0.089 4.089 27 N -0.200 5.200 28 C -0.046 4.046 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.247 0.753 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.128 0.872 42 H 0.056 0.944 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.158 0.842 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.307 -15.334 5.886 19.941 hybrid contribution 1.016 -0.578 -0.173 1.182 sum 12.323 -15.912 5.713 20.921 Atomic orbital electron populations 1.69977 1.05550 1.26098 1.50735 1.25063 0.94934 0.98688 1.00002 0.86492 0.79879 0.83669 0.78046 1.21140 1.21191 1.20093 1.18998 0.95202 0.86007 1.38556 0.91995 1.43706 1.50970 1.02159 1.32099 1.20753 0.92860 0.87623 0.96225 1.22548 1.02240 0.93712 1.00852 1.21531 0.85372 0.95550 0.98049 1.45999 1.27998 1.20144 1.41198 1.17897 0.83325 0.81650 0.82220 1.90781 1.59157 1.60135 1.31452 1.21281 0.96086 0.93172 0.95103 1.22163 0.96033 0.95481 0.99792 1.21646 0.94293 0.99962 0.94967 1.22395 1.01101 0.96067 0.97824 1.22847 0.91591 0.93843 0.97845 1.67590 1.08228 1.33965 1.07193 1.20094 0.90193 1.04050 0.81095 1.22251 0.98722 0.92905 0.98269 1.21427 0.97201 0.97597 0.94756 1.21955 1.01204 0.99446 0.97449 1.22461 0.98806 0.88201 0.99414 1.67624 1.13840 1.27047 1.11536 1.22669 0.92772 0.99427 0.89713 0.93249 0.93030 0.94153 0.91755 0.91548 0.91356 0.91588 0.75327 0.83378 0.84065 0.84214 0.81954 0.87183 0.94438 0.86074 0.86194 0.84155 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.62 11.36 55.49 0.63 -22.99 16 2 C 0.01 0.35 4.94 -17.43 -0.09 0.27 16 3 Si 0.89 20.67 29.61 -169.99 -5.03 15.64 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.26 -6.53 9.47 -15.06 -0.14 -6.68 16 8 H 0.06 1.60 7.93 -52.49 -0.42 1.18 16 9 N -0.57 -12.87 2.44 -174.61 -0.43 -13.30 16 10 C 0.15 2.90 5.72 -4.04 -0.02 2.87 16 11 C -0.15 -2.51 5.62 -26.73 -0.15 -2.67 16 12 C 0.12 1.75 5.67 -4.05 -0.02 1.72 16 13 N -0.70 -9.90 5.54 -61.15 -0.34 -10.23 16 14 C 0.56 8.28 7.81 -12.18 -0.10 8.19 16 15 O -0.54 -9.22 16.32 5.35 0.09 -9.13 16 16 C 0.08 1.01 6.75 -83.01 -0.56 0.45 16 17 C -0.11 -1.13 9.63 -39.05 -0.38 -1.51 16 18 C -0.08 -0.58 10.17 -39.31 -0.40 -0.98 16 19 C -0.15 -0.98 10.11 -39.32 -0.40 -1.38 16 20 C 0.10 0.81 11.18 -17.56 -0.20 0.61 16 21 N -0.46 -5.23 9.54 -9.80 -0.09 -5.32 16 22 C 0.17 3.70 5.49 -5.19 -0.03 3.67 16 23 C -0.12 -2.26 5.46 -104.48 -0.57 -2.83 16 24 C -0.08 -1.38 8.07 -39.28 -0.32 -1.69 16 25 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 26 C 0.07 1.11 11.18 -17.54 -0.20 0.91 16 27 N -0.49 -9.49 10.36 -13.25 -0.14 -9.62 16 28 C 0.11 2.28 10.86 -17.55 -0.19 2.09 16 29 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 32 H 0.06 1.07 6.20 -51.93 -0.32 0.75 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.41 5.48 7.80 -40.82 -0.32 5.16 16 37 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 38 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.11 2.69 5.30 -51.93 -0.28 2.42 16 42 H 0.04 0.76 7.81 -51.93 -0.41 0.35 16 43 H 0.12 1.81 8.04 -52.49 -0.42 1.39 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 46 H 0.15 3.24 8.06 -52.48 -0.42 2.81 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -30.46 392.48 -9.88 -40.34 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.33 Total: 8.77 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -4.15 Total: -0.05 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.37 Total: -61.47 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.46 -9.88 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230645451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.173 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds