Wall clock time and date at job start Tue Mar 31 2020 22:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00506 * 2 1 4 4 H 1.48496 * 109.47616 * 270.00132 * 3 2 1 5 5 H 1.48510 * 109.47110 * 29.99959 * 3 2 1 6 6 H 1.48505 * 109.47514 * 149.99749 * 3 2 1 7 7 C 1.38820 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99562 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00059 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47515 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49814 * 55.06773 * 11 10 9 13 13 C 1.53038 * 109.52770 * 175.14748 * 11 10 9 14 14 C 1.53042 * 109.53946 * 181.33419 * 13 11 10 15 15 C 1.53626 * 109.24035 * 298.51084 * 14 13 11 16 16 N 1.46925 * 108.54273 * 54.85829 * 15 14 13 17 17 C 1.34769 * 120.63020 * 126.36907 * 16 15 14 18 18 O 1.21486 * 120.00238 * 187.51465 * 17 16 15 19 19 C 1.48383 * 119.99953 * 7.51034 * 17 16 15 20 20 C 1.40211 * 119.21583 * 189.80366 * 19 17 16 21 21 C 1.36646 * 119.90470 * 179.76319 * 20 19 17 22 22 C 1.40556 * 118.10527 * 0.49635 * 21 20 19 23 23 C 1.40400 * 122.05728 * 179.77440 * 22 21 20 24 24 N 1.31251 * 119.87376 * 179.97438 * 23 22 21 25 25 C 1.32597 * 122.68160 * 359.97438 * 24 23 22 26 26 C 1.36108 * 121.99702 * 359.97438 * 25 24 23 27 27 C 1.40943 * 118.76585 * 0.02562 * 26 25 24 28 28 N 1.31980 * 119.21818 * 10.07684 * 19 17 16 29 29 C 1.46923 * 118.73883 * 306.09241 * 16 15 14 30 30 H 0.97004 * 119.99685 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00271 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46824 * 59.99988 * 10 9 7 33 33 H 1.09002 * 109.47302 * 300.01059 * 10 9 7 34 34 H 1.09000 * 109.45880 * 301.35771 * 13 11 10 35 35 H 1.09006 * 109.45858 * 61.32800 * 13 11 10 36 36 H 1.08998 * 109.49852 * 58.58736 * 14 13 11 37 37 H 1.08999 * 109.49265 * 178.65453 * 14 13 11 38 38 H 1.09001 * 109.73941 * 295.11695 * 15 14 13 39 39 H 1.08996 * 109.66012 * 174.54955 * 15 14 13 40 40 H 1.08004 * 120.04884 * 359.97438 * 20 19 17 41 41 H 1.07997 * 120.94712 * 180.26968 * 21 20 19 42 42 H 1.07998 * 120.06470 * 359.94769 * 23 22 21 43 43 H 1.07998 * 119.00415 * 180.02562 * 25 24 23 44 44 H 1.07999 * 120.61653 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.58955 * 173.64931 * 29 16 15 46 46 H 1.09004 * 109.58435 * 293.93462 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3880 -0.0005 10 6 2.0578 -3.6568 -0.0017 11 6 1.0636 -4.8197 -0.0021 12 1 0.3797 -4.7133 -0.8441 13 6 1.8235 -6.1424 -0.1253 14 6 0.8273 -7.3037 -0.1592 15 6 0.0299 -7.3251 1.1537 16 7 -0.5880 -6.0061 1.3467 17 6 -1.9137 -5.8937 1.5617 18 8 -2.4346 -4.7964 1.5836 19 6 -2.7371 -7.1102 1.7714 20 6 -4.1345 -6.9964 1.7867 21 6 -4.9064 -8.1083 1.9739 22 6 -4.2577 -9.3416 2.1574 23 6 -4.9691 -10.5348 2.3611 24 7 -4.3194 -11.6630 2.5273 25 6 -2.9956 -11.7359 2.5119 26 6 -2.2150 -10.6374 2.3207 27 6 -2.8378 -9.3868 2.1345 28 7 -2.1366 -8.2726 1.9446 29 6 0.2678 -4.8126 1.3069 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 -0.0005 32 1 2.6852 -3.7150 0.8879 33 1 2.6839 -3.7142 -0.8921 34 1 2.4099 -6.1400 -1.0440 35 1 2.4890 -6.2599 0.7301 36 1 0.1456 -7.1739 -0.9997 37 1 1.3680 -8.2435 -0.2709 38 1 0.6984 -7.5410 1.9871 39 1 -0.7468 -8.0879 1.0986 40 1 -4.6001 -6.0320 1.6473 41 1 -5.9843 -8.0407 1.9843 42 1 -6.0489 -10.5242 2.3815 43 1 -2.5223 -12.6961 2.6545 44 1 -1.1384 -10.7224 2.3118 45 1 -0.3517 -3.9169 1.3531 46 1 0.9537 -4.8264 2.1540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266811462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:09 Heat of formation + Delta-G solvation = 38.314492 kcal Electronic energy + Delta-G solvation = -28932.802254 eV Core-core repulsion = 25015.270012 eV Total energy + Delta-G solvation = -3917.532241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54442 -41.20566 -39.25591 -38.61847 -36.67086 -35.03633 -34.33715 -33.13479 -32.78114 -31.54214 -31.33922 -27.91136 -27.08118 -25.80183 -25.18709 -24.84996 -23.72637 -22.70484 -22.01977 -20.73649 -19.62342 -19.21540 -18.72532 -18.32626 -17.23113 -17.06467 -16.75516 -16.67398 -16.10169 -15.85170 -15.57381 -15.52840 -15.32686 -15.25651 -15.19437 -14.50529 -14.39436 -14.17687 -14.15730 -14.01068 -13.75358 -13.67680 -13.33009 -13.03229 -12.85033 -12.60696 -12.19986 -12.11350 -11.95774 -11.91154 -11.78891 -11.64586 -11.52433 -11.35242 -10.96829 -10.75446 -10.50010 -10.09620 -9.70292 -9.54889 -9.02374 -7.95104 -5.25799 -1.11975 -0.55463 0.70728 1.26754 1.44733 1.47890 1.56363 1.73951 2.12376 2.54849 2.67892 2.95424 3.35761 3.37539 3.37925 3.45994 3.59054 3.68338 3.74289 3.85533 3.91934 3.95671 4.12742 4.17649 4.26412 4.32731 4.50892 4.53830 4.62431 4.69263 4.73710 4.76016 4.79234 4.85128 4.90180 4.91302 5.01215 5.07338 5.08844 5.20558 5.27125 5.34554 5.44967 5.48699 5.51035 5.65399 6.18856 6.25388 6.38621 6.86925 6.91284 7.30802 8.06799 8.29493 9.28485 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.002401 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.233040 B =11658.069248 C =12736.727116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.748 5.748 10 C 0.159 3.841 11 C -0.093 4.093 12 H 0.050 0.950 13 C -0.106 4.106 14 C -0.127 4.127 15 C 0.070 3.930 16 N -0.584 5.584 17 C 0.548 3.452 18 O -0.568 6.568 19 C 0.132 3.868 20 C -0.151 4.151 21 C -0.006 4.006 22 C -0.164 4.164 23 C 0.171 3.829 24 N -0.504 5.504 25 C 0.093 3.907 26 C -0.144 4.144 27 C 0.126 3.874 28 N -0.445 5.445 29 C 0.124 3.876 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.199 0.801 42 H 0.205 0.795 43 H 0.188 0.812 44 H 0.165 0.835 45 H 0.056 0.944 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.849 -30.265 4.800 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.032 3.968 11 C -0.113 4.113 12 H 0.069 0.931 13 C -0.144 4.144 14 C -0.165 4.165 15 C -0.051 4.051 16 N -0.314 5.314 17 C 0.335 3.665 18 O -0.447 6.447 19 C -0.021 4.021 20 C -0.172 4.172 21 C -0.033 4.033 22 C -0.169 4.169 23 C -0.003 4.003 24 N -0.212 5.212 25 C -0.050 4.050 26 C -0.164 4.164 27 C -0.001 4.001 28 N -0.157 5.157 29 C 0.002 3.998 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.216 0.784 42 H 0.222 0.778 43 H 0.205 0.795 44 H 0.183 0.817 45 H 0.074 0.926 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.310 -30.593 4.975 31.845 hybrid contribution -0.185 2.645 -0.234 2.662 sum -7.495 -27.948 4.742 29.321 Atomic orbital electron populations 1.69872 1.06883 1.26062 1.59474 1.25684 0.96391 1.01488 1.03717 0.85071 0.77672 0.79095 0.77492 1.21241 1.22323 1.19074 1.19678 0.91597 0.85276 1.41212 0.90231 1.42678 1.05557 1.01451 1.89426 1.20832 0.93524 0.84158 0.98262 1.21520 0.97039 0.96360 0.96337 0.93104 1.21527 0.97731 0.91782 1.03378 1.22023 0.97911 0.99566 0.97036 1.23345 1.00285 0.83858 0.97630 1.48151 1.06040 1.09534 1.67721 1.18570 0.82565 0.87897 0.77482 1.90833 1.72403 1.28393 1.53045 1.21310 0.92971 0.91009 0.96766 1.21895 0.92304 1.02252 1.00769 1.21918 1.02890 0.88742 0.89765 1.20199 0.94840 0.97719 1.04093 1.23845 1.01913 0.84919 0.89584 1.67611 1.11229 1.29425 1.12954 1.22754 0.88649 0.99740 0.93840 1.21994 1.03255 0.89892 1.01289 1.19487 0.90814 0.93335 0.96486 1.67830 1.37448 0.97835 1.12615 1.21529 0.92901 0.87292 0.98095 0.94084 0.79758 0.95395 0.95401 0.90556 0.90332 0.93044 0.87457 0.90393 0.83294 0.83107 0.78444 0.77812 0.79496 0.81705 0.92562 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.47 13.06 21.65 0.28 -63.19 16 2 C -0.08 -4.89 5.50 84.86 0.47 -4.43 16 3 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.25 -14.41 9.99 84.04 0.84 -13.57 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.75 -40.69 5.38 -343.45 -1.85 -42.54 16 10 C 0.16 6.61 5.66 86.38 0.49 7.10 16 11 C -0.09 -3.22 2.37 -10.72 -0.03 -3.25 16 12 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 13 C -0.11 -2.58 5.17 30.62 0.16 -2.42 16 14 C -0.13 -2.60 6.10 30.82 0.19 -2.41 16 15 C 0.07 1.58 5.90 86.51 0.51 2.09 16 16 N -0.58 -18.44 2.97 -820.88 -2.43 -20.88 16 17 C 0.55 18.86 7.66 86.95 0.67 19.53 16 18 O -0.57 -24.65 15.75 -3.67 -0.06 -24.71 16 19 C 0.13 3.42 6.58 42.31 0.28 3.70 16 20 C -0.15 -3.11 9.53 22.38 0.21 -2.90 16 21 C -0.01 -0.07 9.92 22.46 0.22 0.15 16 22 C -0.16 -2.30 5.75 -21.23 -0.12 -2.42 16 23 C 0.17 1.73 11.05 85.31 0.94 2.67 16 24 N -0.50 -6.60 10.30 -195.61 -2.02 -8.62 16 25 C 0.09 1.01 11.05 84.08 0.93 1.94 16 26 C -0.14 -1.83 10.08 22.44 0.23 -1.60 16 27 C 0.13 2.23 6.63 40.58 0.27 2.50 16 28 N -0.44 -9.70 6.09 -177.60 -1.08 -10.78 16 29 C 0.12 4.59 5.53 86.36 0.48 5.06 16 30 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.37 22.09 6.89 -92.71 -0.64 21.45 16 32 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.15 3.19 4.02 -68.28 -0.27 2.92 16 40 H 0.15 3.23 7.63 -2.91 -0.02 3.21 16 41 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 43 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 44 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.06 2.63 6.20 -2.39 -0.01 2.62 16 46 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -81.79 375.28 1.71 -80.08 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.11 Total: 28.75 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.73 Total: 11.75 kcal Atomic # 7 Polarization: -138.91 SS G_CDS: -7.10 Total: -146.00 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -81.79 1.71 -80.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266811462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.395 kcal (2) G-P(sol) polarization free energy of solvation -81.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds