Wall clock time and date at job start Tue Mar 31 2020 22:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47450 * 270.00024 * 3 2 1 5 5 H 1.48502 * 109.47267 * 30.00371 * 3 2 1 6 6 H 1.48504 * 109.47292 * 150.00085 * 3 2 1 7 7 C 1.38810 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00268 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99655 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99687 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47009 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.49287 * 304.93549 * 11 10 9 13 13 C 1.53031 * 109.49555 * 184.84004 * 11 10 9 14 14 C 1.53041 * 109.53679 * 178.68509 * 13 11 10 15 15 C 1.52755 * 109.38622 * 61.23787 * 14 13 11 16 16 N 1.46931 * 109.00719 * 305.58896 * 15 14 13 17 17 C 1.34770 * 120.63120 * 233.58310 * 16 15 14 18 18 O 1.21496 * 119.99944 * 179.89658 * 17 16 15 19 19 C 1.48379 * 120.00074 * 359.89700 * 17 16 15 20 20 C 1.40221 * 119.21952 * 158.07485 * 19 17 16 21 21 C 1.36641 * 119.90547 * 179.97438 * 20 19 17 22 22 C 1.40554 * 118.10857 * 0.02562 * 21 20 19 23 23 C 1.40401 * 122.06085 * 179.97438 * 22 21 20 24 24 N 1.31245 * 119.87189 * 179.97438 * 23 22 21 25 25 C 1.32600 * 122.69099 * 359.97438 * 24 23 22 26 26 C 1.36100 * 121.98568 * 0.28407 * 25 24 23 27 27 C 1.40954 * 118.77181 * 359.45703 * 26 25 24 28 28 N 1.31975 * 119.22180 * 338.05604 * 19 17 16 29 29 C 1.46922 * 118.73605 * 53.30922 * 16 15 14 30 30 H 0.97007 * 119.99766 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00279 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46924 * 60.00018 * 10 9 7 33 33 H 1.09006 * 109.47155 * 300.00065 * 10 9 7 34 34 H 1.09005 * 109.46170 * 298.69877 * 13 11 10 35 35 H 1.08997 * 109.46745 * 58.67779 * 13 11 10 36 36 H 1.09002 * 109.49982 * 181.31540 * 14 13 11 37 37 H 1.09002 * 109.49471 * 301.37571 * 14 13 11 38 38 H 1.09007 * 109.51254 * 185.70940 * 15 14 13 39 39 H 1.08999 * 109.43737 * 65.42375 * 15 14 13 40 40 H 1.07999 * 120.04290 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.94592 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.06289 * 0.02562 * 23 22 21 43 43 H 1.07994 * 119.00645 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.61733 * 179.72765 * 26 25 24 45 45 H 1.08995 * 109.58811 * 66.43371 * 29 16 15 46 46 H 1.09006 * 109.58727 * 186.71077 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3799 -4.7140 0.8409 13 6 1.8244 -6.1420 0.1205 14 6 0.8289 -7.3040 0.1530 15 6 0.0298 -7.3235 -1.1487 16 7 -0.5870 -6.0054 -1.3514 17 6 -1.9129 -5.8934 -1.5653 18 8 -2.4113 -4.7976 -1.7297 19 6 -2.7641 -7.1083 -1.6003 20 6 -4.1401 -6.9872 -1.3589 21 6 -4.9371 -8.0967 -1.3881 22 6 -4.3357 -9.3370 -1.6632 23 6 -5.0755 -10.5292 -1.7130 24 7 -4.4699 -11.6639 -1.9742 25 6 -3.1656 -11.7443 -2.1991 26 6 -2.3598 -10.6479 -2.1685 27 6 -2.9359 -9.3898 -1.9003 28 7 -2.2083 -8.2772 -1.8581 29 6 0.2682 -4.8115 -1.3102 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6847 -3.7145 0.8895 33 1 2.6848 -3.7145 -0.8906 34 1 2.4902 -6.2581 -0.7348 35 1 2.4106 -6.1406 1.0395 36 1 1.3701 -8.2438 0.2632 37 1 0.1475 -7.1758 0.9940 38 1 -0.7476 -8.0852 -1.0873 39 1 0.6975 -7.5462 -1.9810 40 1 -4.5693 -6.0182 -1.1510 41 1 -5.9987 -8.0229 -1.2043 42 1 -6.1410 -10.5125 -1.5375 43 1 -2.7288 -12.7096 -2.4081 44 1 -1.2992 -10.7396 -2.3508 45 1 0.9557 -4.8252 -2.1558 46 1 -0.3518 -3.9161 -1.3579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266811463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:13 Heat of formation + Delta-G solvation = 59.545150 kcal Electronic energy + Delta-G solvation = -28942.011297 eV Core-core repulsion = 25025.399686 eV Total energy + Delta-G solvation = -3916.611611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80365 -40.15823 -38.36309 -37.47534 -35.01417 -34.16374 -32.93730 -31.99659 -31.64969 -30.90497 -29.68798 -26.81040 -25.49157 -24.96381 -24.34397 -23.24805 -22.96895 -21.44167 -20.76022 -19.54413 -18.92309 -17.91396 -17.61610 -16.98991 -16.39662 -16.04037 -15.62617 -15.23427 -14.99412 -14.77429 -14.72022 -14.54645 -14.41795 -13.75501 -13.64616 -13.48980 -13.39230 -13.19702 -13.02992 -12.83095 -12.60975 -12.41849 -12.28536 -11.52260 -11.19155 -11.02394 -10.97594 -10.81798 -10.69327 -10.41135 -10.30945 -10.28100 -10.16263 -9.97525 -9.75211 -9.60760 -9.30680 -8.93048 -8.83427 -8.50169 -6.86727 -5.69661 -2.99305 -0.40927 0.11915 1.33701 2.15020 2.84232 2.98268 3.47506 3.50688 3.52043 3.54161 3.66746 3.85432 4.00759 4.18066 4.20930 4.33396 4.62385 4.65458 4.81062 4.93147 5.02280 5.07317 5.11982 5.17281 5.23652 5.28139 5.44018 5.46325 5.55228 5.64192 5.68815 5.75953 5.87399 5.91403 5.97826 6.02240 6.11161 6.16063 6.23149 6.24515 6.43096 6.54879 6.66790 6.78999 6.90281 7.08408 7.40600 7.44127 7.74981 8.10181 8.48209 9.59188 10.17071 10.51464 11.52722 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002405 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.416400 B =11639.234015 C =12664.973115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.113 4.113 14 C -0.135 4.135 15 C 0.076 3.924 16 N -0.584 5.584 17 C 0.558 3.442 18 O -0.516 6.516 19 C 0.152 3.848 20 C -0.130 4.130 21 C -0.035 4.035 22 C -0.156 4.156 23 C 0.162 3.838 24 N -0.486 5.486 25 C 0.089 3.911 26 C -0.136 4.136 27 C 0.146 3.854 28 N -0.440 5.440 29 C 0.118 3.882 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.134 0.866 39 H 0.066 0.934 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.149 0.851 45 H 0.070 0.930 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 -26.782 -3.027 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.173 4.173 15 C -0.047 4.047 16 N -0.315 5.315 17 C 0.342 3.658 18 O -0.390 6.390 19 C -0.002 4.002 20 C -0.150 4.150 21 C -0.063 4.063 22 C -0.160 4.160 23 C -0.012 4.012 24 N -0.193 5.193 25 C -0.055 4.055 26 C -0.157 4.157 27 C 0.019 3.981 28 N -0.153 5.153 29 C -0.004 4.004 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.085 0.915 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.186 0.814 43 H 0.179 0.821 44 H 0.167 0.833 45 H 0.088 0.912 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.871 -27.049 -3.359 28.370 hybrid contribution -0.007 1.790 0.209 1.802 sum -7.879 -25.259 -3.150 26.646 Atomic orbital electron populations 1.69677 1.05054 1.25613 1.57496 1.24759 0.95509 0.97676 1.03041 0.86202 0.78598 0.83958 0.77485 1.21742 1.21811 1.20828 1.19206 0.90975 0.84173 1.42875 0.91224 1.42418 1.05939 0.99952 1.89487 1.20639 0.92954 0.85111 0.98042 1.21677 0.97982 0.95270 0.97637 0.90807 1.21542 0.97555 0.93811 1.02222 1.21886 0.98498 0.98931 0.98033 1.22734 0.99475 0.85486 0.96999 1.48043 1.06198 1.09046 1.68212 1.17938 0.82152 0.87121 0.78572 1.90885 1.72807 1.25995 1.49329 1.21761 0.92757 0.91764 0.93925 1.21872 0.92852 1.01282 0.99003 1.21483 1.00923 0.90395 0.93461 1.19937 0.95471 0.96682 1.03948 1.23272 1.00091 0.86052 0.91783 1.67503 1.11824 1.28760 1.11262 1.22288 0.88754 0.98904 0.95544 1.21792 1.02277 0.90574 1.01032 1.19061 0.89637 0.93242 0.96152 1.68021 1.36218 0.97743 1.13280 1.21845 0.93339 0.87656 0.97531 0.93499 0.78103 0.96006 0.96204 0.91756 0.91641 0.91019 0.92019 0.85001 0.91523 0.82494 0.82780 0.81375 0.82148 0.83299 0.91196 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.05 5.38 -59.90 -0.32 -19.37 16 10 C 0.16 3.27 5.65 -4.04 -0.02 3.24 16 11 C -0.11 -1.77 2.38 -90.50 -0.21 -1.98 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.45 5.17 -26.69 -0.14 -1.59 16 14 C -0.14 -1.49 6.06 -26.84 -0.16 -1.66 16 15 C 0.08 0.89 5.95 -3.93 -0.02 0.86 16 16 N -0.58 -8.76 2.98 -173.95 -0.52 -9.28 16 17 C 0.56 8.90 7.61 -12.09 -0.09 8.81 16 18 O -0.52 -10.12 15.90 5.37 0.09 -10.04 16 19 C 0.15 1.91 6.46 -82.89 -0.54 1.38 16 20 C -0.13 -1.32 9.53 -39.41 -0.38 -1.69 16 21 C -0.03 -0.25 9.92 -39.29 -0.39 -0.64 16 22 C -0.16 -1.30 5.75 -106.74 -0.61 -1.91 16 23 C 0.16 1.12 11.05 -16.99 -0.19 0.93 16 24 N -0.49 -4.01 10.30 -13.18 -0.14 -4.15 16 25 C 0.09 0.62 11.06 -17.99 -0.20 0.43 16 26 C -0.14 -1.05 10.08 -39.32 -0.40 -1.44 16 27 C 0.15 1.43 6.63 -84.86 -0.56 0.87 16 28 N -0.44 -4.97 6.33 -7.49 -0.05 -5.02 16 29 C 0.12 2.03 5.52 -3.71 -0.02 2.01 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.38 10.66 6.90 -40.82 -0.28 10.38 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 1.48 4.00 -79.51 -0.32 1.16 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.16 1.54 7.76 -52.49 -0.41 1.14 16 41 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.10 2.21 6.21 -51.93 -0.32 1.89 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -35.20 375.64 -10.13 -45.32 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.37 Total: 7.26 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -4.18 Total: 0.05 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -0.30 Total: -66.15 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.20 -10.13 -45.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266811463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.869 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds