Wall clock time and date at job start Tue Mar 31 2020 22:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47450 * 270.00024 * 3 2 1 5 5 H 1.48502 * 109.47267 * 30.00371 * 3 2 1 6 6 H 1.48504 * 109.47292 * 150.00085 * 3 2 1 7 7 C 1.38810 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00268 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99655 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99687 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47009 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.49287 * 304.93549 * 11 10 9 13 13 C 1.53031 * 109.49555 * 184.84004 * 11 10 9 14 14 C 1.53041 * 109.53679 * 178.68509 * 13 11 10 15 15 C 1.52755 * 109.38622 * 61.23787 * 14 13 11 16 16 N 1.46931 * 109.00719 * 305.58896 * 15 14 13 17 17 C 1.34770 * 120.63120 * 233.58310 * 16 15 14 18 18 O 1.21496 * 119.99944 * 179.89658 * 17 16 15 19 19 C 1.48379 * 120.00074 * 359.89700 * 17 16 15 20 20 C 1.40221 * 119.21952 * 158.07485 * 19 17 16 21 21 C 1.36641 * 119.90547 * 179.97438 * 20 19 17 22 22 C 1.40554 * 118.10857 * 0.02562 * 21 20 19 23 23 C 1.40401 * 122.06085 * 179.97438 * 22 21 20 24 24 N 1.31245 * 119.87189 * 179.97438 * 23 22 21 25 25 C 1.32600 * 122.69099 * 359.97438 * 24 23 22 26 26 C 1.36100 * 121.98568 * 0.28407 * 25 24 23 27 27 C 1.40954 * 118.77181 * 359.45703 * 26 25 24 28 28 N 1.31975 * 119.22180 * 338.05604 * 19 17 16 29 29 C 1.46922 * 118.73605 * 53.30922 * 16 15 14 30 30 H 0.97007 * 119.99766 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00279 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46924 * 60.00018 * 10 9 7 33 33 H 1.09006 * 109.47155 * 300.00065 * 10 9 7 34 34 H 1.09005 * 109.46170 * 298.69877 * 13 11 10 35 35 H 1.08997 * 109.46745 * 58.67779 * 13 11 10 36 36 H 1.09002 * 109.49982 * 181.31540 * 14 13 11 37 37 H 1.09002 * 109.49471 * 301.37571 * 14 13 11 38 38 H 1.09007 * 109.51254 * 185.70940 * 15 14 13 39 39 H 1.08999 * 109.43737 * 65.42375 * 15 14 13 40 40 H 1.07999 * 120.04290 * 0.02562 * 20 19 17 41 41 H 1.07998 * 120.94592 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.06289 * 0.02562 * 23 22 21 43 43 H 1.07994 * 119.00645 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.61733 * 179.72765 * 26 25 24 45 45 H 1.08995 * 109.58811 * 66.43371 * 29 16 15 46 46 H 1.09006 * 109.58727 * 186.71077 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3799 -4.7140 0.8409 13 6 1.8244 -6.1420 0.1205 14 6 0.8289 -7.3040 0.1530 15 6 0.0298 -7.3235 -1.1487 16 7 -0.5870 -6.0054 -1.3514 17 6 -1.9129 -5.8934 -1.5653 18 8 -2.4113 -4.7976 -1.7297 19 6 -2.7641 -7.1083 -1.6003 20 6 -4.1401 -6.9872 -1.3589 21 6 -4.9371 -8.0967 -1.3881 22 6 -4.3357 -9.3370 -1.6632 23 6 -5.0755 -10.5292 -1.7130 24 7 -4.4699 -11.6639 -1.9742 25 6 -3.1656 -11.7443 -2.1991 26 6 -2.3598 -10.6479 -2.1685 27 6 -2.9359 -9.3898 -1.9003 28 7 -2.2083 -8.2772 -1.8581 29 6 0.2682 -4.8115 -1.3102 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6847 -3.7145 0.8895 33 1 2.6848 -3.7145 -0.8906 34 1 2.4902 -6.2581 -0.7348 35 1 2.4106 -6.1406 1.0395 36 1 1.3701 -8.2438 0.2632 37 1 0.1475 -7.1758 0.9940 38 1 -0.7476 -8.0852 -1.0873 39 1 0.6975 -7.5462 -1.9810 40 1 -4.5693 -6.0182 -1.1510 41 1 -5.9987 -8.0229 -1.2043 42 1 -6.1410 -10.5125 -1.5375 43 1 -2.7288 -12.7096 -2.4081 44 1 -1.2992 -10.7396 -2.3508 45 1 0.9557 -4.8252 -2.1558 46 1 -0.3518 -3.9161 -1.3579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266811463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:12 Heat of formation + Delta-G solvation = 36.122504 kcal Electronic energy + Delta-G solvation = -28943.026979 eV Core-core repulsion = 25025.399686 eV Total energy + Delta-G solvation = -3917.627293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.54931 -41.22148 -39.27011 -38.63090 -36.67869 -35.02368 -34.35196 -33.16113 -32.79349 -31.55165 -31.36744 -27.92279 -27.08865 -25.80715 -25.20066 -24.84932 -23.72862 -22.71806 -22.02266 -20.71875 -19.62844 -19.22418 -18.74641 -18.33400 -17.32692 -17.06680 -16.73745 -16.63025 -16.08630 -15.84550 -15.62330 -15.53455 -15.33229 -15.25517 -15.21418 -14.49860 -14.35481 -14.20790 -14.16205 -14.03198 -13.75491 -13.68635 -13.33080 -13.04382 -12.83222 -12.64907 -12.17912 -12.12701 -11.96325 -11.92386 -11.78058 -11.62536 -11.53393 -11.36158 -10.96824 -10.76998 -10.50351 -10.17792 -9.73505 -9.54559 -9.02223 -7.95130 -5.25767 -1.10514 -0.55436 0.70829 1.26613 1.44878 1.48018 1.56379 1.71584 2.07549 2.54904 2.69187 2.94936 3.35273 3.37152 3.37699 3.45752 3.58788 3.67673 3.74178 3.84850 3.91833 3.94384 4.11634 4.17313 4.25802 4.31496 4.49877 4.53515 4.61830 4.68450 4.73327 4.75566 4.78028 4.84579 4.89309 4.91018 5.01107 5.05571 5.07293 5.19532 5.26159 5.33375 5.44053 5.48260 5.50116 5.60842 6.18377 6.25491 6.37339 6.86743 6.90092 7.30951 8.06876 8.29405 9.28433 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.002405 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.416400 B =11639.234015 C =12664.973115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.748 5.748 10 C 0.159 3.841 11 C -0.093 4.093 12 H 0.052 0.948 13 C -0.106 4.106 14 C -0.128 4.128 15 C 0.073 3.927 16 N -0.583 5.583 17 C 0.549 3.451 18 O -0.569 6.569 19 C 0.133 3.867 20 C -0.152 4.152 21 C -0.006 4.006 22 C -0.165 4.165 23 C 0.171 3.829 24 N -0.504 5.504 25 C 0.093 3.907 26 C -0.144 4.144 27 C 0.126 3.874 28 N -0.446 5.446 29 C 0.125 3.875 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.144 0.856 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.199 0.801 42 H 0.205 0.795 43 H 0.188 0.812 44 H 0.165 0.835 45 H 0.074 0.926 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 -30.183 -2.937 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.032 3.968 11 C -0.113 4.113 12 H 0.071 0.929 13 C -0.144 4.144 14 C -0.166 4.166 15 C -0.048 4.048 16 N -0.313 5.313 17 C 0.336 3.664 18 O -0.448 6.448 19 C -0.020 4.020 20 C -0.173 4.173 21 C -0.033 4.033 22 C -0.169 4.169 23 C -0.002 4.002 24 N -0.212 5.212 25 C -0.049 4.049 26 C -0.165 4.165 27 C -0.001 4.001 28 N -0.159 5.159 29 C 0.002 3.998 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.160 0.840 39 H 0.098 0.902 40 H 0.168 0.832 41 H 0.216 0.784 42 H 0.222 0.778 43 H 0.205 0.795 44 H 0.182 0.818 45 H 0.092 0.908 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.418 -30.519 -3.262 31.577 hybrid contribution -0.164 2.637 0.146 2.646 sum -7.582 -27.882 -3.116 29.062 Atomic orbital electron populations 1.69870 1.06866 1.26059 1.59484 1.25676 0.96392 1.01473 1.03717 0.85076 0.77703 0.79132 0.77449 1.21385 1.22251 1.19031 1.19676 0.91599 0.85274 1.41195 0.90233 1.42676 1.05555 1.01449 1.89436 1.20835 0.93521 0.84132 0.98289 1.21526 0.97069 0.96374 0.96291 0.92932 1.21522 0.97710 0.91707 1.03459 1.21873 0.97956 0.99695 0.97039 1.23007 1.00037 0.83764 0.97998 1.48155 1.06026 1.09523 1.67637 1.18567 0.82557 0.87840 0.77436 1.90839 1.73827 1.28345 1.51779 1.21272 0.93113 0.90926 0.96696 1.21886 0.92243 1.02268 1.00906 1.21908 1.02488 0.88751 0.90189 1.20194 0.95146 0.97677 1.03860 1.23842 1.01531 0.84895 0.89956 1.67607 1.12462 1.29294 1.11855 1.22750 0.88436 0.99822 0.93941 1.21987 1.03293 0.89824 1.01351 1.19454 0.90725 0.93279 0.96626 1.67818 1.36810 0.97687 1.13608 1.21527 0.92912 0.87226 0.98133 0.94085 0.79754 0.95313 0.95432 0.90331 0.90439 0.87398 0.92963 0.84005 0.90213 0.83183 0.78440 0.77801 0.79488 0.81791 0.90762 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.25 13.06 21.65 0.28 -62.97 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 3 Si 0.98 48.00 29.55 68.60 2.03 50.03 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.75 -40.46 5.38 -343.43 -1.85 -42.31 16 10 C 0.16 6.56 5.65 86.38 0.49 7.05 16 11 C -0.09 -3.18 2.38 -10.72 -0.03 -3.21 16 12 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 13 C -0.11 -2.54 5.17 30.62 0.16 -2.38 16 14 C -0.13 -2.56 6.06 30.53 0.19 -2.37 16 15 C 0.07 1.64 5.95 86.22 0.51 2.16 16 16 N -0.58 -18.37 2.98 -822.54 -2.45 -20.82 16 17 C 0.55 18.95 7.61 86.95 0.66 19.61 16 18 O -0.57 -24.78 15.90 -3.70 -0.06 -24.84 16 19 C 0.13 3.47 6.46 42.31 0.27 3.74 16 20 C -0.15 -3.16 9.53 22.38 0.21 -2.94 16 21 C -0.01 -0.07 9.92 22.46 0.22 0.15 16 22 C -0.16 -2.33 5.75 -21.24 -0.12 -2.45 16 23 C 0.17 1.76 11.05 85.31 0.94 2.70 16 24 N -0.50 -6.67 10.30 -195.62 -2.02 -8.69 16 25 C 0.09 1.03 11.06 84.08 0.93 1.96 16 26 C -0.14 -1.87 10.08 22.44 0.23 -1.64 16 27 C 0.13 2.27 6.63 40.58 0.27 2.54 16 28 N -0.45 -9.89 6.33 -177.60 -1.12 -11.02 16 29 C 0.12 4.58 5.52 86.36 0.48 5.05 16 30 H 0.25 15.76 8.31 -92.70 -0.77 14.98 16 31 H 0.37 21.94 6.90 -92.71 -0.64 21.30 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.14 3.04 4.00 -56.84 -0.23 2.82 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.15 3.23 7.76 -2.91 -0.02 3.20 16 41 H 0.20 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.21 0.47 8.06 -2.91 -0.02 0.45 16 43 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 44 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 46 H 0.06 2.65 6.21 -2.38 -0.01 2.64 16 Total: -1.00 -81.63 375.64 1.69 -79.94 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.15 Total: 28.63 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.72 Total: 12.05 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -7.15 Total: -145.81 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.06 Total: -24.84 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -81.63 1.69 -79.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266811463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.060 kcal (2) G-P(sol) polarization free energy of solvation -81.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds