Wall clock time and date at job start Tue Mar 31 2020 22:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40355 * 120.47831 * 146.35771 * 3 2 1 5 5 C 1.36889 * 118.48808 * 179.74987 * 4 3 2 6 6 C 1.39359 * 119.38410 * 0.50702 * 5 4 3 7 7 N 1.38584 * 119.53324 * 179.74588 * 6 5 4 8 8 C 1.48663 * 110.99379 * 64.12331 * 7 6 5 9 9 C 1.54647 * 104.62850 * 158.51405 * 8 7 6 10 10 C 1.53256 * 104.67444 * 336.30819 * 9 8 7 11 11 C 1.53607 * 111.07955 * 239.52870 * 10 9 8 12 12 C 1.54708 * 101.51148 * 262.67076 * 11 10 9 13 13 N 1.46887 * 105.52165 * 335.48582 * 12 11 10 14 14 C 1.46496 * 124.37112 * 196.79182 * 13 12 11 15 15 C 1.53003 * 109.47103 * 270.01562 * 14 13 12 16 16 C 1.50699 * 109.47244 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99675 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00036 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00202 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46796 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47113 * 119.99990 * 20 18 16 23 23 H 1.48503 * 109.46821 * 240.00054 * 20 18 16 24 24 C 1.34758 * 111.25386 * 16.82750 * 13 12 11 25 25 O 1.21278 * 125.13189 * 178.94472 * 24 13 12 26 26 C 1.48805 * 111.00084 * 179.73270 * 7 6 5 27 27 N 1.32563 * 120.93283 * 359.48417 * 6 5 4 28 28 C 1.31716 * 121.64559 * 0.26226 * 27 6 5 29 29 H 1.08003 * 120.75535 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.30665 * 180.26262 * 5 4 3 31 31 H 1.08990 * 110.40588 * 39.73252 * 8 7 6 32 32 H 1.09002 * 110.40521 * 277.29831 * 8 7 6 33 33 H 1.08994 * 110.39716 * 217.50288 * 9 8 7 34 34 H 1.08999 * 110.39603 * 95.10404 * 9 8 7 35 35 H 1.09004 * 111.01678 * 20.72421 * 11 10 9 36 36 H 1.08995 * 111.01673 * 144.61275 * 11 10 9 37 37 H 1.08997 * 110.23406 * 216.47854 * 12 11 10 38 38 H 1.09000 * 110.31291 * 94.53676 * 12 11 10 39 39 H 1.08995 * 109.47216 * 30.01434 * 14 13 12 40 40 H 1.09005 * 109.46965 * 150.01937 * 14 13 12 41 41 H 1.09002 * 109.47235 * 300.00322 * 15 14 13 42 42 H 1.08993 * 109.46997 * 59.99969 * 15 14 13 43 43 H 0.96989 * 120.00275 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.45342 * 83.08750 * 26 7 6 45 45 H 1.09003 * 110.45667 * 320.52407 * 26 7 6 46 46 H 1.07995 * 119.74355 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2795 1.0080 -0.6701 5 6 4.6476 0.9719 -0.6394 6 6 5.2892 -0.0609 0.0414 7 7 6.6741 -0.1034 0.0700 8 6 7.2283 1.0728 0.7907 9 6 8.6467 0.6335 1.2227 10 6 8.5840 -0.8973 1.2618 11 6 8.9113 -1.4279 2.6657 12 6 10.4095 -1.7849 2.5192 13 7 10.6181 -2.0246 1.0852 14 6 11.7773 -2.7222 0.5233 15 6 12.8842 -1.7102 0.2205 16 6 14.0764 -2.4278 -0.3580 17 1 14.0474 -3.4984 -0.4964 18 6 15.2038 -1.7172 -0.7117 19 7 15.2389 -0.4133 -0.5437 20 14 16.6814 -2.6066 -1.4296 21 1 16.3901 -4.0601 -1.5162 22 1 16.9659 -2.0774 -2.7876 23 1 17.8624 -2.3891 -0.5560 24 6 9.6059 -1.5192 0.3531 25 8 9.5314 -1.5600 -0.8567 26 6 7.1558 -1.2754 0.8502 27 7 4.5936 -1.0005 0.6664 28 6 3.2765 -1.0006 0.6661 29 1 2.7594 1.7957 -1.1950 30 1 5.2242 1.7346 -1.1415 31 1 6.6196 1.3043 1.6647 32 1 7.2834 1.9347 0.1257 33 1 8.8828 1.0295 2.2103 34 1 9.3857 0.9649 0.4931 35 1 8.7657 -0.6543 3.4198 36 1 8.3192 -2.3133 2.8968 37 1 10.6401 -2.6848 3.0893 38 1 11.0309 -0.9555 2.8571 39 1 12.1427 -3.4563 1.2413 40 1 11.4858 -3.2281 -0.3972 41 1 12.5188 -0.9760 -0.4975 42 1 13.1756 -1.2044 1.1409 43 1 16.0321 0.0865 -0.7922 44 1 7.1629 -2.1703 0.2279 45 1 6.5330 -1.4282 1.7317 46 1 2.7406 -1.7811 1.1857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274678299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:21 Heat of formation + Delta-G solvation = 29.423125 kcal Electronic energy + Delta-G solvation = -28606.123425 eV Core-core repulsion = 24688.205625 eV Total energy + Delta-G solvation = -3917.917800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40645 -41.34387 -39.04997 -37.59942 -37.37353 -35.82033 -34.44967 -33.73968 -32.53614 -30.75238 -30.37639 -29.10029 -27.04586 -25.59040 -25.04013 -23.76695 -23.61843 -22.59561 -21.54832 -20.06305 -19.90668 -18.68484 -18.43425 -17.76365 -17.26628 -17.07673 -16.64353 -16.18333 -15.90986 -15.68352 -15.49908 -15.17982 -14.93721 -14.86238 -14.52902 -14.44910 -14.33718 -14.27244 -14.03625 -13.68671 -13.61022 -13.48686 -13.26118 -13.12074 -13.04558 -12.89575 -12.83010 -12.57629 -12.50094 -12.02652 -11.93873 -11.84147 -11.51233 -11.37758 -11.00636 -10.88771 -10.63420 -10.59095 -10.47458 -9.51131 -9.21479 -8.23690 -6.36166 -0.43455 0.27819 1.38916 1.40591 1.53493 1.59623 1.64546 1.87018 2.17579 2.42120 2.50318 2.81372 2.89213 3.09869 3.22529 3.32372 3.37084 3.66308 3.79758 3.90440 4.02130 4.06811 4.18266 4.18546 4.33355 4.41649 4.46157 4.59628 4.64825 4.70998 4.73762 4.77544 4.79475 4.86509 4.89935 4.92768 4.99206 5.03404 5.10651 5.22768 5.34521 5.35372 5.44607 5.51550 5.63032 5.84834 6.07018 6.16750 6.35921 6.41959 6.79472 6.84597 7.29761 7.34007 8.88584 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.002054 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.230848 B =13630.269195 C =13871.269153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.290 3.710 3 C -0.120 4.120 4 C 0.007 3.993 5 C -0.181 4.181 6 C 0.324 3.676 7 N -0.477 5.477 8 C 0.053 3.947 9 C -0.103 4.103 10 C -0.099 4.099 11 C -0.103 4.103 12 C 0.092 3.908 13 N -0.622 5.622 14 C 0.142 3.858 15 C 0.025 3.975 16 C -0.545 4.545 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.969 3.031 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.273 1.273 24 C 0.510 3.490 25 O -0.578 6.578 26 C 0.082 3.918 27 N -0.536 5.536 28 C 0.186 3.814 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.048 0.952 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.048 0.952 41 H -0.028 1.028 42 H 0.002 0.998 43 H 0.264 0.736 44 H 0.059 0.941 45 H 0.107 0.893 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.844 3.813 10.799 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.025 4.025 3 C -0.127 4.127 4 C -0.021 4.021 5 C -0.203 4.203 6 C 0.092 3.908 7 N -0.193 5.193 8 C -0.071 4.071 9 C -0.142 4.142 10 C -0.103 4.103 11 C -0.140 4.140 12 C -0.030 4.030 13 N -0.354 5.354 14 C 0.020 3.980 15 C -0.013 4.013 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.794 3.206 21 H -0.184 1.184 22 H -0.208 1.208 23 H -0.198 1.198 24 C 0.299 3.701 25 O -0.457 6.457 26 C -0.045 4.045 27 N -0.250 5.250 28 C 0.025 3.975 29 H 0.189 0.811 30 H 0.178 0.822 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.067 0.933 35 H 0.148 0.852 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.067 0.933 41 H -0.009 1.009 42 H 0.021 0.979 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.731 3.221 10.025 25.962 hybrid contribution 1.081 0.271 -0.926 1.449 sum -22.650 3.492 9.099 24.658 Atomic orbital electron populations 1.81323 1.13218 1.09248 1.10298 1.25437 0.92164 0.92544 0.92327 1.16900 0.84618 1.01979 1.09220 1.21475 0.93113 0.95497 0.91988 1.21429 0.94907 1.00902 1.03094 1.20468 0.89954 0.90238 0.90169 1.62334 1.03854 1.06119 1.47005 1.23352 0.94105 0.91759 0.97910 1.22298 0.96999 0.90858 1.03999 1.21509 0.94228 0.97832 0.96734 1.22787 0.93555 1.04067 0.93635 1.22439 0.97988 1.02988 0.79577 1.48769 1.21136 1.56144 1.09308 1.21339 0.84299 0.94525 0.97823 1.19203 0.92996 0.94295 0.94830 1.21589 0.99773 0.94689 1.42274 0.91661 1.26002 1.02182 0.95636 0.95917 1.70111 1.30148 1.07847 1.49029 0.85334 0.78415 0.79057 0.77839 1.18366 1.20816 1.19789 1.21151 0.83764 0.77542 0.87667 1.90667 1.79336 1.60033 1.15693 1.22712 0.91541 0.92448 0.97798 1.67801 1.08900 1.27352 1.20938 1.23065 0.88302 0.94642 0.91530 0.81126 0.82160 0.89332 0.87801 0.85986 0.93314 0.85190 0.87792 0.88378 0.91067 0.89124 0.93333 1.00946 0.97928 0.92696 0.92220 0.87509 0.79631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.43 18.54 19.01 0.35 -9.08 16 2 C 0.29 4.27 15.37 88.33 1.36 5.63 16 3 C -0.12 -1.35 5.75 -21.19 -0.12 -1.47 16 4 C 0.01 0.06 9.85 22.47 0.22 0.28 16 5 C -0.18 -2.20 9.42 22.22 0.21 -1.99 16 6 C 0.32 5.59 6.16 133.21 0.82 6.41 16 7 N -0.48 -10.08 5.39 -688.48 -3.71 -13.78 16 8 C 0.05 0.81 6.05 86.52 0.52 1.33 16 9 C -0.10 -2.02 6.32 31.24 0.20 -1.83 16 10 C -0.10 -2.28 0.83 -52.66 -0.04 -2.33 16 11 C -0.10 -1.53 6.11 31.38 0.19 -1.34 16 12 C 0.09 2.08 7.37 86.89 0.64 2.72 16 13 N -0.62 -21.97 2.94 -818.14 -2.41 -24.38 16 14 C 0.14 6.10 5.88 86.38 0.51 6.61 16 15 C 0.02 1.35 5.30 29.85 0.16 1.51 16 16 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 17 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 20 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.51 18.85 6.49 87.51 0.57 19.41 16 25 O -0.58 -27.72 17.47 -3.02 -0.05 -27.77 16 26 C 0.08 1.79 4.89 86.06 0.42 2.22 16 27 N -0.54 -8.83 8.37 -192.25 -1.61 -10.44 16 28 C 0.19 2.21 10.92 85.03 0.93 3.14 16 29 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 30 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.09 0.87 7.96 -2.39 -0.02 0.85 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.12 1.52 7.32 -2.39 -0.02 1.50 16 34 H 0.05 1.34 7.76 -2.39 -0.02 1.32 16 35 H 0.13 0.99 7.43 -2.38 -0.02 0.97 16 36 H 0.10 1.21 7.89 -2.39 -0.02 1.19 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.05 2.27 7.95 -2.38 -0.02 2.25 16 41 H -0.03 -1.77 8.14 -2.39 -0.02 -1.78 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.26 15.17 8.31 -92.72 -0.77 14.40 16 44 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 45 H 0.11 1.80 6.81 -2.39 -0.02 1.78 16 46 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -84.10 388.17 3.15 -80.95 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.00 Total: 5.33 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 7.27 Total: 9.62 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -7.09 Total: -114.71 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -84.10 3.15 -80.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274678299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.374 kcal (2) G-P(sol) polarization free energy of solvation -84.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds