Wall clock time and date at job start Tue Mar 31 2020 23:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86791 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47146 * 299.99553 * 3 2 1 6 6 H 1.48500 * 109.47561 * 59.99967 * 3 2 1 7 7 C 1.38813 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99887 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99848 * 179.72276 * 9 7 2 11 11 C 1.52995 * 109.46735 * 185.35499 * 10 9 7 12 12 H 1.09001 * 109.59046 * 45.06279 * 11 10 9 13 13 C 1.53195 * 109.58523 * 165.34202 * 11 10 9 14 14 C 1.53049 * 109.31346 * 174.41965 * 13 11 10 15 15 C 1.53038 * 109.53711 * 298.63424 * 14 13 11 16 16 C 1.53188 * 109.31161 * 61.36780 * 15 14 13 17 17 N 1.46923 * 109.59042 * 284.62832 * 11 10 9 18 18 C 1.34785 * 120.62560 * 6.63090 * 17 11 10 19 19 O 1.21545 * 120.00064 * 3.51497 * 18 17 11 20 20 C 1.47867 * 119.99434 * 183.51792 * 18 17 11 21 21 C 1.40626 * 120.26322 * 313.37959 * 20 18 17 22 22 N 1.30857 * 121.65949 * 180.02562 * 21 20 18 23 23 C 1.33590 * 121.58401 * 359.97438 * 22 21 20 24 24 C 1.40640 * 121.63307 * 180.02562 * 23 22 21 25 25 N 1.31153 * 120.03921 * 179.97438 * 24 23 22 26 26 C 1.32487 * 122.89118 * 0.02861 * 25 24 23 27 27 C 1.36312 * 121.71490 * 359.97438 * 26 25 24 28 28 C 1.40607 * 118.64730 * 359.97438 * 27 26 25 29 29 C 1.38991 * 120.25712 * 133.11579 * 20 18 17 30 30 H 0.97000 * 119.99428 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99854 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46828 * 305.35226 * 10 9 7 33 33 H 1.09000 * 109.46947 * 65.35562 * 10 9 7 34 34 H 1.08997 * 109.49773 * 294.37289 * 13 11 10 35 35 H 1.09001 * 109.49799 * 54.44032 * 13 11 10 36 36 H 1.08995 * 109.45595 * 58.65527 * 14 13 11 37 37 H 1.09004 * 109.45854 * 178.62467 * 14 13 11 38 38 H 1.08996 * 109.49447 * 181.31249 * 15 14 13 39 39 H 1.08999 * 109.50090 * 301.41409 * 15 14 13 40 40 H 1.08999 * 109.58895 * 65.14798 * 16 15 14 41 41 H 1.09003 * 109.58992 * 185.57602 * 16 15 14 42 42 H 1.08001 * 119.17643 * 0.02562 * 21 20 18 43 43 H 1.08003 * 119.98115 * 359.95621 * 24 23 22 44 44 H 1.08009 * 119.14287 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.67858 * 179.97438 * 27 26 25 46 46 H 1.07999 * 121.11331 * 359.97220 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 -0.0050 11 6 1.0685 -4.8162 -0.1384 12 1 0.3378 -4.5857 -0.9136 13 6 1.8242 -6.0961 -0.5095 14 6 0.8515 -7.2776 -0.5050 15 6 0.2651 -7.4524 0.8977 16 6 -0.5083 -6.1880 1.2847 17 7 0.3815 -5.0274 1.1430 18 6 0.5638 -4.1725 2.1689 19 8 1.2513 -3.1814 2.0193 20 6 -0.0727 -4.4405 3.4764 21 6 -1.4275 -4.8113 3.5424 22 7 -2.0183 -5.0542 4.6845 23 6 -1.3627 -4.9623 5.8448 24 6 -1.9965 -5.2237 7.0728 25 7 -1.3226 -5.1245 8.1936 26 6 -0.0435 -4.7820 8.2362 27 6 0.6630 -4.5079 7.1031 28 6 0.0073 -4.5945 5.8623 29 6 0.6650 -4.3331 4.6495 30 1 -0.4849 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0005 32 1 2.7513 -3.6723 -0.8459 33 1 2.6142 -3.7593 0.9267 34 1 2.2592 -5.9867 -1.5029 35 1 2.6169 -6.2742 0.2171 36 1 0.0460 -7.0874 -1.2143 37 1 1.3816 -8.1856 -0.7926 38 1 -0.4098 -8.3083 0.9058 39 1 1.0721 -7.6180 1.6114 40 1 -1.3694 -6.0706 0.6268 41 1 -0.8439 -6.2670 2.3187 42 1 -1.9949 -4.8978 2.6275 43 1 -3.0387 -5.5060 7.0929 44 1 0.4527 -4.7192 9.1935 45 1 1.7052 -4.2299 7.1573 46 1 1.7083 -4.0548 4.6292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280446523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:14 Heat of formation + Delta-G solvation = 89.589189 kcal Electronic energy + Delta-G solvation = -29998.997545 eV Core-core repulsion = 26083.688741 eV Total energy + Delta-G solvation = -3915.308804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43953 -40.20045 -38.10354 -37.02124 -34.64436 -33.79703 -32.97214 -32.14789 -31.15180 -30.57333 -29.85447 -26.48476 -25.41859 -24.80862 -24.17960 -22.91934 -22.60683 -21.72572 -20.74751 -19.61138 -18.60091 -17.74382 -17.29970 -16.85811 -16.26829 -15.65722 -15.27652 -15.19164 -14.79000 -14.56083 -14.43761 -14.39178 -14.23635 -13.63845 -13.56627 -13.33603 -13.14455 -13.03504 -12.84974 -12.63135 -12.53644 -12.32789 -12.16024 -11.73848 -11.12612 -10.98455 -10.96413 -10.79070 -10.75381 -10.63647 -10.37066 -10.08944 -9.90553 -9.73997 -9.55833 -9.35501 -8.77920 -8.68064 -8.52512 -8.18297 -6.59945 -5.60018 -2.79273 -0.03102 0.39683 1.63224 2.59970 3.12051 3.29609 3.52156 3.56842 3.59124 3.85497 3.94946 4.18113 4.28787 4.41781 4.55493 4.60736 4.70146 4.70559 4.79286 4.84777 4.95337 5.06917 5.11835 5.26989 5.32951 5.37951 5.41374 5.52116 5.56421 5.70560 5.75099 5.75388 5.77526 5.86185 5.91523 5.97235 6.01998 6.08629 6.15369 6.28872 6.35741 6.47355 6.58051 6.82822 7.17596 7.47753 7.71545 7.73798 7.83594 8.58000 8.66117 9.69759 10.29706 10.64021 11.63852 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009097 B = 0.004139 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.367894 B = 6762.553251 C = 8988.735354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.021 4.021 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.208 4.208 8 H 0.066 0.934 9 N -0.698 5.698 10 C 0.158 3.842 11 C 0.143 3.857 12 H 0.073 0.927 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.098 3.902 17 N -0.606 5.606 18 C 0.519 3.481 19 O -0.429 6.429 20 C -0.143 4.143 21 C 0.157 3.843 22 N -0.460 5.460 23 C 0.074 3.926 24 C 0.162 3.838 25 N -0.475 5.475 26 C 0.069 3.931 27 C -0.135 4.135 28 C -0.079 4.079 29 C -0.016 4.016 30 H 0.250 0.750 31 H 0.380 0.620 32 H 0.018 0.982 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.170 0.830 43 H 0.172 0.828 44 H 0.158 0.842 45 H 0.143 0.857 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 -19.066 8.670 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.216 4.216 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.340 4.340 8 H 0.084 0.916 9 N -0.341 5.341 10 C 0.031 3.969 11 C 0.040 3.960 12 H 0.091 0.909 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.025 4.025 17 N -0.344 5.344 18 C 0.302 3.698 19 O -0.297 6.297 20 C -0.150 4.150 21 C -0.017 4.017 22 N -0.169 5.169 23 C -0.050 4.050 24 C -0.011 4.011 25 N -0.184 5.184 26 C -0.074 4.074 27 C -0.156 4.156 28 C -0.086 4.086 29 C -0.043 4.043 30 H 0.060 0.940 31 H 0.213 0.787 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.187 0.813 43 H 0.189 0.811 44 H 0.175 0.825 45 H 0.161 0.839 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.853 -18.732 9.606 21.133 hybrid contribution 1.344 1.406 -0.790 2.099 sum -0.510 -17.327 8.816 19.447 Atomic orbital electron populations 1.69666 1.05007 1.24933 1.59026 1.24624 0.95430 0.97278 1.04251 0.86172 0.78723 0.84738 0.76982 1.20787 1.22206 1.22248 1.19205 0.90775 0.84272 1.39783 0.91614 1.42216 1.05336 0.99596 1.86902 1.20927 0.92966 0.84964 0.98074 1.21547 0.94906 0.95412 0.84106 0.90866 1.21918 0.98229 0.94259 1.02177 1.21510 0.99147 0.98260 0.96658 1.21906 1.00255 0.97265 0.97729 1.21992 0.92946 0.85490 1.02069 1.47785 1.47313 1.26270 1.12995 1.18062 0.84468 0.84175 0.83067 1.91293 1.34436 1.23762 1.80199 1.21388 0.96068 1.01632 0.95941 1.23322 0.91143 0.90929 0.96294 1.67898 1.37002 1.14659 0.97345 1.19993 0.90974 0.99638 0.94370 1.23086 1.00004 0.93066 0.84939 1.67431 1.09204 1.12028 1.29701 1.22240 0.89970 0.96532 0.98628 1.21976 1.01557 1.00221 0.91805 1.18906 0.94743 1.00126 0.94811 1.21764 1.00610 0.92295 0.89582 0.94005 0.78666 0.96443 0.94355 0.90660 0.91607 0.91683 0.91933 0.91038 0.91714 0.91137 0.89823 0.81290 0.81080 0.82486 0.83943 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.41 13.06 55.49 0.72 -28.69 16 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 3 Si 0.90 23.49 29.55 -169.99 -5.02 18.47 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 7 C -0.21 -6.06 9.80 -15.06 -0.15 -6.21 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -18.12 3.30 -59.91 -0.20 -18.32 16 10 C 0.16 3.25 4.91 -4.04 -0.02 3.23 16 11 C 0.14 2.24 2.90 -67.60 -0.20 2.04 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.13 -1.50 5.32 -26.61 -0.14 -1.64 16 14 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16 15 C -0.13 -1.19 6.08 -26.61 -0.16 -1.36 16 16 C 0.10 1.04 5.21 -3.71 -0.02 1.02 16 17 N -0.61 -8.86 2.97 -166.32 -0.49 -9.35 16 18 C 0.52 9.06 6.99 -12.32 -0.09 8.98 16 19 O -0.43 -9.74 10.93 5.33 0.06 -9.68 16 20 C -0.14 -2.13 5.14 -104.78 -0.54 -2.67 16 21 C 0.16 2.09 8.47 -17.07 -0.14 1.95 16 22 N -0.46 -6.20 10.33 -10.65 -0.11 -6.31 16 23 C 0.07 0.97 6.62 -84.81 -0.56 0.41 16 24 C 0.16 1.88 11.25 -16.94 -0.19 1.69 16 25 N -0.47 -5.56 10.28 -13.11 -0.13 -5.69 16 26 C 0.07 0.70 11.08 -17.96 -0.20 0.50 16 27 C -0.14 -1.41 9.88 -39.38 -0.39 -1.80 16 28 C -0.08 -1.01 5.75 -106.80 -0.61 -1.63 16 29 C -0.02 -0.22 9.65 -38.48 -0.37 -0.59 16 30 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.38 10.53 7.44 -40.82 -0.30 10.22 16 32 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.04 0.85 6.13 -51.93 -0.32 0.54 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.84 4.32 -51.93 -0.22 0.62 16 42 H 0.17 1.95 6.67 -52.49 -0.35 1.60 16 43 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 44 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 45 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -35.44 368.28 -9.90 -45.33 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.23 Total: 6.77 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -4.03 Total: 1.93 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.21 Total: -68.37 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.06 Total: -9.68 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.44 -9.90 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280446523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.924 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds