Wall clock time and date at job start Tue Mar 31 2020 23:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 119.99973 * 2 1 4 4 H 1.48497 * 109.47384 * 270.00243 * 3 2 1 5 5 H 1.48504 * 109.47268 * 30.00161 * 3 2 1 6 6 H 1.48501 * 109.47030 * 149.99967 * 3 2 1 7 7 C 1.37881 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99758 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.98003 * 125.00169 * 10 9 7 12 12 C 1.35245 * 107.85965 * 179.97438 * 11 10 9 13 13 C 1.40402 * 107.86627 * 0.26430 * 12 11 10 14 14 N 1.40192 * 125.97032 * 179.70432 * 13 12 11 15 15 C 1.34777 * 120.00049 * 359.97438 * 14 13 12 16 16 O 1.21594 * 120.00167 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00065 * 180.02562 * 15 14 13 18 18 C 1.46503 * 120.00069 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47096 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.54237 * 59.82411 * 19 18 17 21 21 F 1.39900 * 109.46993 * 299.99542 * 20 19 18 22 22 C 1.53177 * 109.54650 * 299.55527 * 19 18 17 23 23 C 1.53092 * 109.16021 * 297.11486 * 22 19 18 24 24 O 1.42898 * 109.41712 * 302.38782 * 23 22 19 25 25 C 1.42904 * 114.09881 * 61.15894 * 24 23 22 26 26 C 1.53095 * 109.41565 * 298.84699 * 25 24 23 27 27 N 1.31206 * 108.05388 * 359.55112 * 13 12 11 28 28 H 0.96997 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47151 * 59.99802 * 9 7 2 30 30 H 1.08999 * 109.46428 * 299.99744 * 9 7 2 31 31 H 1.08000 * 126.06600 * 359.97438 * 11 10 9 32 32 H 1.08002 * 126.06264 * 179.97438 * 12 11 10 33 33 H 0.97005 * 120.00073 * 179.97438 * 14 13 12 34 34 H 0.97005 * 120.00056 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.47084 * 300.00046 * 18 17 15 36 36 H 1.08999 * 109.46974 * 59.99831 * 18 17 15 37 37 H 1.09001 * 109.47456 * 59.99839 * 20 19 18 38 38 H 1.09007 * 109.47144 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.51840 * 57.01687 * 22 19 18 40 40 H 1.09001 * 109.52445 * 177.20941 * 22 19 18 41 41 H 1.09005 * 109.47680 * 182.40642 * 23 22 19 42 42 H 1.08999 * 109.49215 * 62.38079 * 23 22 19 43 43 H 1.08996 * 109.48181 * 178.86052 * 25 24 23 44 44 H 1.09005 * 109.48682 * 58.83007 * 25 24 23 45 45 H 1.09002 * 109.51780 * 297.70207 * 26 25 24 46 46 H 1.08992 * 109.52448 * 177.51310 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0013 11 6 4.8551 -3.1131 -0.8962 12 6 5.0564 -4.4056 -0.5527 13 6 4.2901 -4.6710 0.5935 14 7 4.2132 -5.8984 1.2665 15 6 4.9164 -6.9576 0.8191 16 8 5.6180 -6.8485 -0.1680 17 7 4.8420 -8.1377 1.4659 18 6 5.6060 -9.2891 0.9792 19 6 5.3463 -10.4936 1.8861 20 6 3.8533 -10.8282 1.8775 21 9 3.1262 -9.7282 2.3450 22 6 5.7915 -10.1652 3.3145 23 6 7.3006 -9.9081 3.3239 24 8 7.9811 -11.0555 2.8116 25 6 7.6399 -11.3824 1.4629 26 6 6.1443 -11.6986 1.3787 27 7 3.6612 -3.5687 0.9264 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6809 0.8904 30 1 3.8751 -0.6797 -0.8895 31 1 5.2998 -2.6020 -1.7373 32 1 5.6901 -5.1100 -1.0711 33 1 3.6538 -5.9854 2.0542 34 1 4.2827 -8.2247 2.2536 35 1 5.2965 -9.5266 -0.0385 36 1 6.6694 -9.0499 0.9891 37 1 3.5399 -11.0654 0.8608 38 1 3.6695 -11.6862 2.5243 39 1 5.2682 -9.2749 3.6634 40 1 5.5609 -11.0049 3.9701 41 1 7.6302 -9.7158 4.3449 42 1 7.5261 -9.0432 2.7001 43 1 8.2139 -12.2521 1.1433 44 1 7.8697 -10.5369 0.8145 45 1 5.9209 -12.5693 1.9953 46 1 5.8734 -11.9051 0.3434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364089235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:14 Heat of formation + Delta-G solvation = -34.444813 kcal Electronic energy + Delta-G solvation = -29806.092566 eV Core-core repulsion = 25454.636020 eV Total energy + Delta-G solvation = -4351.456546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.24259 -40.86203 -40.40206 -39.30554 -36.28715 -34.67078 -33.74350 -33.12161 -31.64575 -31.13985 -29.34959 -28.43398 -27.37397 -26.32612 -24.23453 -23.32448 -22.73578 -21.66540 -20.40295 -20.05583 -19.34653 -18.02278 -17.07328 -16.96044 -16.73411 -16.59528 -16.34638 -16.21618 -15.82980 -15.57051 -15.23779 -14.92755 -14.79779 -14.49667 -14.37024 -13.93847 -13.77274 -13.61250 -13.11861 -13.00950 -12.83991 -12.50617 -12.27419 -12.23731 -12.02942 -11.87789 -11.70317 -11.37223 -11.13321 -11.06773 -10.75820 -10.73036 -10.61027 -10.07163 -9.96914 -9.91904 -9.71799 -9.49324 -9.16908 -8.74318 -8.12413 -7.43000 -6.21186 -4.23147 2.39254 2.63998 3.10460 3.17038 3.24315 3.24947 3.42738 3.53446 3.74099 3.84038 3.89310 4.00892 4.24980 4.33363 4.40979 4.42986 4.60518 4.64992 4.72425 4.90668 4.94921 5.06681 5.07495 5.14998 5.21568 5.25313 5.35163 5.38070 5.47594 5.53952 5.56084 5.69054 5.74125 6.21493 6.29296 6.38029 6.50748 6.61416 6.74007 6.75790 7.02684 7.30992 7.48526 7.86341 7.95430 8.36912 8.62570 8.64111 8.89266 9.33930 10.91591 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.002116 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.836039 B =13226.943926 C =13726.760543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.233 3.767 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.282 4.282 13 C 0.280 3.720 14 N -0.643 5.643 15 C 0.713 3.287 16 O -0.572 6.572 17 N -0.744 5.744 18 C 0.145 3.855 19 C -0.106 4.106 20 C 0.072 3.928 21 F -0.208 7.208 22 C -0.146 4.146 23 C 0.058 3.942 24 O -0.381 6.381 25 C 0.056 3.944 26 C -0.140 4.140 27 N -0.300 5.300 28 H 0.268 0.732 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.408 0.592 34 H 0.403 0.597 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.815 -25.519 4.905 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.314 4.314 13 C 0.025 3.975 14 N -0.293 5.293 15 C 0.413 3.587 16 O -0.448 6.448 17 N -0.407 5.407 18 C 0.021 3.979 19 C -0.107 4.107 20 C 0.017 3.983 21 F -0.189 7.189 22 C -0.184 4.184 23 C -0.019 4.019 24 O -0.299 6.299 25 C -0.020 4.020 26 C -0.178 4.178 27 N -0.131 5.131 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.242 0.758 34 H 0.243 0.757 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.552 -24.718 4.957 28.622 hybrid contribution -0.141 0.722 0.014 0.736 sum 13.411 -23.995 4.971 27.935 Atomic orbital electron populations 1.69877 1.06153 1.27256 1.49288 1.24841 0.94876 0.98801 0.94315 0.86900 0.80437 0.83829 0.78898 1.19726 1.20569 1.18863 1.21121 0.87836 0.95689 1.52479 0.89650 1.20024 0.97406 0.73094 0.98127 1.48578 1.32690 1.10223 1.18801 1.22545 0.95978 0.94722 0.96706 1.21531 1.11403 0.96613 1.01806 1.18793 0.98582 0.85786 0.94312 1.41371 1.49019 1.07129 1.31751 1.15618 0.80411 0.79838 0.82877 1.90852 1.43832 1.83237 1.26889 1.45359 1.52229 1.09155 1.33923 1.21291 0.96655 0.82998 0.96978 1.21521 0.95589 0.96470 0.97088 1.22103 0.88822 0.86210 1.01170 1.92606 1.79023 1.56530 1.90723 1.22245 0.97651 1.03371 0.95125 1.22627 0.90727 0.88338 1.00167 1.87954 1.66028 1.47593 1.28362 1.22640 0.94111 1.01200 0.84088 1.22124 0.96137 0.96820 1.02752 1.77388 1.24133 0.95517 1.16067 0.92216 0.94096 0.93371 0.81471 0.82031 0.75773 0.75651 0.90991 0.90788 0.90048 0.90155 0.90103 0.90301 0.88507 0.92411 0.88384 0.92384 0.89944 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.31 27.47 -169.99 -4.67 15.64 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.53 -15.22 9.79 -34.44 -0.34 -15.56 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 9 C 0.23 5.59 5.33 -5.19 -0.03 5.56 16 10 N -0.32 -7.42 3.67 -62.57 -0.23 -7.65 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 12 C -0.28 -5.65 9.61 -39.83 -0.38 -6.03 16 13 C 0.28 5.75 8.11 -154.37 -1.25 4.50 16 14 N -0.64 -10.44 5.45 -15.51 -0.08 -10.52 16 15 C 0.71 10.75 8.53 -86.92 -0.74 10.01 16 16 O -0.57 -10.32 13.47 5.28 0.07 -10.25 16 17 N -0.74 -7.83 4.67 -65.22 -0.30 -8.14 16 18 C 0.15 1.22 4.01 -4.04 -0.02 1.21 16 19 C -0.11 -0.59 0.51 -154.33 -0.08 -0.67 16 20 C 0.07 0.38 6.37 37.16 0.24 0.62 16 21 F -0.21 -1.70 13.86 2.25 0.03 -1.67 16 22 C -0.15 -0.85 4.64 -26.59 -0.12 -0.97 16 23 C 0.06 0.40 6.57 37.21 0.24 0.64 16 24 O -0.38 -3.00 10.77 -35.23 -0.38 -3.38 16 25 C 0.06 0.31 6.57 37.21 0.24 0.56 16 26 C -0.14 -0.59 4.92 -26.59 -0.13 -0.72 16 27 N -0.30 -7.03 12.42 31.44 0.39 -6.64 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 30 H 0.05 1.05 7.49 -51.93 -0.39 0.66 16 31 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 32 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 33 H 0.41 5.58 8.84 -40.82 -0.36 5.22 16 34 H 0.40 3.68 4.90 -40.82 -0.20 3.48 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.67 5.01 -51.93 -0.26 0.41 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 39 H 0.08 0.50 6.62 -51.93 -0.34 0.15 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.45 6.60 -51.93 -0.34 0.10 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.35 6.61 -51.93 -0.34 0.00 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -35.56 367.09 -7.85 -43.40 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.32 Total: 7.78 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.66 Total: 1.96 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.55 Total: -59.02 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.31 Total: -13.63 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.03 Total: -1.67 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.56 -7.85 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364089235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.957 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds