Wall clock time and date at job start Tue Mar 31 2020 23:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 119.99973 * 2 1 4 4 H 1.48497 * 109.47384 * 270.00243 * 3 2 1 5 5 H 1.48504 * 109.47268 * 30.00161 * 3 2 1 6 6 H 1.48501 * 109.47030 * 149.99967 * 3 2 1 7 7 C 1.37881 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99758 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.98003 * 125.00169 * 10 9 7 12 12 C 1.35245 * 107.85965 * 179.97438 * 11 10 9 13 13 C 1.40402 * 107.86627 * 0.26430 * 12 11 10 14 14 N 1.40192 * 125.97032 * 179.70432 * 13 12 11 15 15 C 1.34777 * 120.00049 * 359.97438 * 14 13 12 16 16 O 1.21594 * 120.00167 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00065 * 180.02562 * 15 14 13 18 18 C 1.46503 * 120.00069 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47096 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.54237 * 59.82411 * 19 18 17 21 21 F 1.39900 * 109.46993 * 299.99542 * 20 19 18 22 22 C 1.53177 * 109.54650 * 299.55527 * 19 18 17 23 23 C 1.53092 * 109.16021 * 297.11486 * 22 19 18 24 24 O 1.42898 * 109.41712 * 302.38782 * 23 22 19 25 25 C 1.42904 * 114.09881 * 61.15894 * 24 23 22 26 26 C 1.53095 * 109.41565 * 298.84699 * 25 24 23 27 27 N 1.31206 * 108.05388 * 359.55112 * 13 12 11 28 28 H 0.96997 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47151 * 59.99802 * 9 7 2 30 30 H 1.08999 * 109.46428 * 299.99744 * 9 7 2 31 31 H 1.08000 * 126.06600 * 359.97438 * 11 10 9 32 32 H 1.08002 * 126.06264 * 179.97438 * 12 11 10 33 33 H 0.97005 * 120.00073 * 179.97438 * 14 13 12 34 34 H 0.97005 * 120.00056 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.47084 * 300.00046 * 18 17 15 36 36 H 1.08999 * 109.46974 * 59.99831 * 18 17 15 37 37 H 1.09001 * 109.47456 * 59.99839 * 20 19 18 38 38 H 1.09007 * 109.47144 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.51840 * 57.01687 * 22 19 18 40 40 H 1.09001 * 109.52445 * 177.20941 * 22 19 18 41 41 H 1.09005 * 109.47680 * 182.40642 * 23 22 19 42 42 H 1.08999 * 109.49215 * 62.38079 * 23 22 19 43 43 H 1.08996 * 109.48181 * 178.86052 * 25 24 23 44 44 H 1.09005 * 109.48682 * 58.83007 * 25 24 23 45 45 H 1.09002 * 109.51780 * 297.70207 * 26 25 24 46 46 H 1.08992 * 109.52448 * 177.51310 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0013 11 6 4.8551 -3.1131 -0.8962 12 6 5.0564 -4.4056 -0.5527 13 6 4.2901 -4.6710 0.5935 14 7 4.2132 -5.8984 1.2665 15 6 4.9164 -6.9576 0.8191 16 8 5.6180 -6.8485 -0.1680 17 7 4.8420 -8.1377 1.4659 18 6 5.6060 -9.2891 0.9792 19 6 5.3463 -10.4936 1.8861 20 6 3.8533 -10.8282 1.8775 21 9 3.1262 -9.7282 2.3450 22 6 5.7915 -10.1652 3.3145 23 6 7.3006 -9.9081 3.3239 24 8 7.9811 -11.0555 2.8116 25 6 7.6399 -11.3824 1.4629 26 6 6.1443 -11.6986 1.3787 27 7 3.6612 -3.5687 0.9264 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6809 0.8904 30 1 3.8751 -0.6797 -0.8895 31 1 5.2998 -2.6020 -1.7373 32 1 5.6901 -5.1100 -1.0711 33 1 3.6538 -5.9854 2.0542 34 1 4.2827 -8.2247 2.2536 35 1 5.2965 -9.5266 -0.0385 36 1 6.6694 -9.0499 0.9891 37 1 3.5399 -11.0654 0.8608 38 1 3.6695 -11.6862 2.5243 39 1 5.2682 -9.2749 3.6634 40 1 5.5609 -11.0049 3.9701 41 1 7.6302 -9.7158 4.3449 42 1 7.5261 -9.0432 2.7001 43 1 8.2139 -12.2521 1.1433 44 1 7.8697 -10.5369 0.8145 45 1 5.9209 -12.5693 1.9953 46 1 5.8734 -11.9051 0.3434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364089235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:13 Heat of formation + Delta-G solvation = -60.023881 kcal Electronic energy + Delta-G solvation = -29807.201758 eV Core-core repulsion = 25454.636020 eV Total energy + Delta-G solvation = -4352.565738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.79207 -42.25164 -41.28674 -40.39144 -37.02258 -36.14330 -35.22451 -34.49038 -32.95258 -32.09210 -30.97042 -29.15625 -28.80937 -27.32787 -24.77073 -24.51854 -23.77279 -23.01667 -21.89341 -21.37503 -20.21300 -19.10718 -19.05431 -18.19355 -17.55464 -17.35239 -17.10580 -16.93292 -16.75337 -16.62077 -16.31116 -15.95482 -15.87775 -15.53411 -15.42194 -15.29405 -14.81571 -14.57481 -14.34862 -14.34386 -13.95392 -13.82234 -13.70831 -13.27127 -13.01238 -12.71924 -12.52767 -12.30866 -12.28472 -12.16942 -11.91053 -11.82807 -11.61511 -11.51986 -11.47027 -11.20509 -11.12739 -10.86417 -10.47269 -10.13706 -9.73249 -9.03358 -8.37039 -6.47225 1.04485 1.13736 1.36958 1.40457 1.50059 1.69371 2.10639 2.29546 2.40036 2.95316 2.96034 3.10933 3.26995 3.39546 3.60104 3.88311 3.93525 3.99267 4.17057 4.20588 4.22715 4.29957 4.39524 4.50787 4.57051 4.61149 4.65659 4.72242 4.76627 4.81212 4.81574 4.86423 4.93854 4.95065 5.07845 5.10550 5.13697 5.20781 5.25029 5.46699 5.80355 5.92634 6.02567 6.25349 6.42457 6.57993 6.71638 7.11299 7.15872 7.41112 8.80171 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.002116 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.836039 B =13226.943926 C =13726.760543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.025 0.975 9 C 0.240 3.760 10 N -0.345 5.345 11 C 0.061 3.939 12 C -0.293 4.293 13 C 0.284 3.716 14 N -0.640 5.640 15 C 0.711 3.289 16 O -0.601 6.601 17 N -0.724 5.724 18 C 0.141 3.859 19 C -0.096 4.096 20 C 0.065 3.935 21 F -0.225 7.225 22 C -0.143 4.143 23 C 0.057 3.943 24 O -0.398 6.398 25 C 0.049 3.951 26 C -0.133 4.133 27 N -0.351 5.351 28 H 0.272 0.728 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.211 0.789 32 H 0.168 0.832 33 H 0.417 0.583 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.113 0.887 44 H 0.049 0.951 45 H 0.097 0.903 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.626 -26.039 4.665 30.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.087 4.087 12 C -0.324 4.324 13 C 0.028 3.972 14 N -0.291 5.291 15 C 0.410 3.590 16 O -0.480 6.480 17 N -0.386 5.386 18 C 0.017 3.983 19 C -0.097 4.097 20 C 0.010 3.990 21 F -0.207 7.207 22 C -0.181 4.181 23 C -0.020 4.020 24 O -0.317 6.317 25 C -0.027 4.027 26 C -0.171 4.171 27 N -0.181 5.181 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.228 0.772 32 H 0.185 0.815 33 H 0.254 0.746 34 H 0.254 0.746 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.116 0.884 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.374 -25.316 4.745 29.996 hybrid contribution -0.710 0.666 0.089 0.978 sum 14.664 -24.650 4.834 29.086 Atomic orbital electron populations 1.70055 1.08584 1.28797 1.50731 1.25944 0.95795 1.03597 0.93236 0.85596 0.79473 0.77101 0.80085 1.17683 1.20636 1.16243 1.21236 0.90544 0.93700 1.52968 0.95647 1.19881 0.94122 0.74375 0.99630 1.48489 1.34182 1.10063 1.20002 1.23247 0.94265 0.94634 0.96547 1.21720 1.11723 0.97079 1.01879 1.19140 0.97322 0.86349 0.94370 1.41434 1.49448 1.06284 1.31935 1.15805 0.79940 0.80463 0.82798 1.90817 1.45050 1.83802 1.28311 1.45338 1.51665 1.08151 1.33401 1.21494 0.95917 0.83148 0.97698 1.21470 0.96332 0.95644 0.96233 1.22343 0.87994 0.86241 1.02389 1.92567 1.79464 1.57636 1.90995 1.22224 0.96718 1.03670 0.95491 1.22636 0.91486 0.87713 1.00143 1.87930 1.66615 1.47693 1.29456 1.22810 0.95450 1.01468 0.82987 1.22113 0.94662 0.96331 1.04004 1.77305 1.26287 0.96736 1.17816 0.91892 0.93689 0.89991 0.77192 0.81491 0.74605 0.74615 0.91213 0.91473 0.89103 0.87673 0.90609 0.89039 0.87997 0.93904 0.86916 0.93283 0.88446 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.96 41.10 27.47 68.60 1.88 42.99 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 7 C -0.55 -32.01 9.79 25.60 0.25 -31.76 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 9 C 0.24 11.28 5.33 85.63 0.46 11.74 16 10 N -0.35 -15.87 3.67 -351.86 -1.29 -17.16 16 11 C 0.06 2.32 11.44 83.52 0.96 3.27 16 12 C -0.29 -11.58 9.61 22.11 0.21 -11.37 16 13 C 0.28 11.82 8.11 133.32 1.08 12.90 16 14 N -0.64 -21.04 5.45 -321.23 -1.75 -22.80 16 15 C 0.71 21.42 8.53 179.05 1.53 22.95 16 16 O -0.60 -21.70 13.47 -4.01 -0.05 -21.75 16 17 N -0.72 -14.92 4.67 -478.53 -2.24 -17.15 16 18 C 0.14 2.26 4.01 86.38 0.35 2.61 16 19 C -0.10 -0.90 0.51 -52.06 -0.03 -0.93 16 20 C 0.06 0.55 6.37 71.98 0.46 1.00 16 21 F -0.23 -3.38 13.86 44.97 0.62 -2.75 16 22 C -0.14 -1.46 4.64 30.68 0.14 -1.32 16 23 C 0.06 0.74 6.57 72.01 0.47 1.21 16 24 O -0.40 -5.85 10.77 -148.98 -1.60 -7.45 16 25 C 0.05 0.48 6.57 72.01 0.47 0.95 16 26 C -0.13 -0.80 4.92 30.69 0.15 -0.65 16 27 N -0.35 -16.81 12.42 -54.44 -0.68 -17.49 16 28 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.05 2.07 7.20 -2.39 -0.02 2.06 16 30 H 0.08 3.30 7.49 -2.39 -0.02 3.28 16 31 H 0.21 5.84 8.06 -2.91 -0.02 5.82 16 32 H 0.17 6.44 5.91 -2.91 -0.02 6.43 16 33 H 0.42 11.67 8.84 -92.70 -0.82 10.85 16 34 H 0.41 7.26 4.90 -92.70 -0.45 6.81 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.21 5.01 -2.39 -0.01 1.20 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.08 0.85 6.62 -2.39 -0.02 0.83 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.04 0.67 6.60 -2.39 -0.02 0.65 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 0.56 6.61 -2.38 -0.02 0.54 16 45 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -80.90 367.09 1.87 -79.03 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.29 Total: 31.09 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.96 Total: 11.82 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -5.65 Total: -132.97 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -1.66 Total: -29.20 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.62 Total: -2.75 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.88 Total: 42.99 kcal Total: -80.90 1.87 -79.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364089235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.010 kcal (2) G-P(sol) polarization free energy of solvation -80.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds