Wall clock time and date at job start Tue Mar 31 2020 23:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47355 * 300.00200 * 3 2 1 6 6 H 1.48499 * 109.47178 * 60.00045 * 3 2 1 7 7 C 1.38811 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99824 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99711 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47194 * 175.29073 * 10 9 7 12 12 H 1.08997 * 109.58279 * 309.12332 * 11 10 9 13 13 C 1.53185 * 109.58481 * 188.69578 * 11 10 9 14 14 C 1.53042 * 109.30783 * 185.57675 * 13 11 10 15 15 C 1.53038 * 109.54062 * 61.36556 * 14 13 11 16 16 C 1.53630 * 109.24082 * 298.50980 * 15 14 13 17 17 N 1.46923 * 108.53866 * 54.85640 * 16 15 14 18 18 C 1.34779 * 120.62744 * 126.37185 * 17 16 15 19 19 O 1.21550 * 119.99810 * 186.18231 * 18 17 16 20 20 C 1.47857 * 120.00258 * 6.18710 * 18 17 16 21 21 C 1.40632 * 120.26227 * 37.72339 * 20 18 17 22 22 N 1.30859 * 121.66090 * 180.02562 * 21 20 18 23 23 C 1.33593 * 121.57845 * 359.97438 * 22 21 20 24 24 C 1.40642 * 121.62474 * 180.02562 * 23 22 21 25 25 N 1.31150 * 120.04177 * 179.97438 * 24 23 22 26 26 C 1.32494 * 122.88663 * 0.02562 * 25 24 23 27 27 C 1.36311 * 121.71296 * 0.25131 * 26 25 24 28 28 C 1.40603 * 118.65231 * 359.51083 * 27 26 25 29 29 C 1.38993 * 120.26227 * 217.70503 * 20 18 17 30 30 H 0.97001 * 120.00189 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99884 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47515 * 55.28897 * 10 9 7 33 33 H 1.09008 * 109.47012 * 295.28909 * 10 9 7 34 34 H 1.08997 * 109.49707 * 305.52308 * 13 11 10 35 35 H 1.08994 * 109.50108 * 65.62770 * 13 11 10 36 36 H 1.09005 * 109.45758 * 181.38315 * 14 13 11 37 37 H 1.09000 * 109.46368 * 301.34258 * 14 13 11 38 38 H 1.09005 * 109.49718 * 58.58560 * 15 14 13 39 39 H 1.09000 * 109.49756 * 178.65156 * 15 14 13 40 40 H 1.09001 * 109.73817 * 295.11690 * 16 15 14 41 41 H 1.08997 * 109.66095 * 174.54761 * 16 15 14 42 42 H 1.07998 * 119.17045 * 359.97438 * 21 20 18 43 43 H 1.08004 * 119.97763 * 359.96334 * 24 23 22 44 44 H 1.07997 * 119.14256 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.67171 * 179.74453 * 27 26 25 46 46 H 1.08004 * 121.10340 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0681 -4.8173 0.1179 12 1 0.3965 -4.6403 0.9579 13 6 1.8344 -6.1257 0.3361 14 6 0.8507 -7.2979 0.3145 15 6 0.1622 -7.3633 -1.0506 16 6 -0.6273 -6.0658 -1.2821 17 7 0.2877 -4.9274 -1.1220 18 6 0.4045 -3.9987 -2.0918 19 8 1.2442 -3.1249 -1.9984 20 6 -0.4887 -4.0429 -3.2692 21 6 -1.8375 -4.4127 -3.1221 22 7 -2.6520 -4.4614 -4.1452 23 6 -2.2418 -4.1614 -5.3807 24 6 -3.1164 -4.2129 -6.4809 25 7 -2.6808 -3.9114 -7.6807 26 6 -1.4287 -3.5516 -7.9220 27 6 -0.5004 -3.4757 -6.9267 28 6 -0.8953 -3.7794 -5.6119 29 6 -0.0021 -3.7188 -4.5302 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.7466 -3.6788 0.8442 33 1 2.6200 -3.7518 -0.9298 34 1 2.5698 -6.2533 -0.4582 35 1 2.3414 -6.0939 1.3004 36 1 1.3902 -8.2279 0.4940 37 1 0.1009 -7.1571 1.0930 38 1 0.9134 -7.4793 -1.8319 39 1 -0.5206 -8.2126 -1.0734 40 1 -1.4346 -5.9911 -0.5536 41 1 -1.0409 -6.0632 -2.2906 42 1 -2.2104 -4.6636 -2.1401 43 1 -4.1474 -4.5010 -6.3377 44 1 -1.1348 -3.3166 -8.9343 45 1 0.5168 -3.1844 -7.1431 46 1 1.0289 -3.4305 -4.6732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566943781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:18 Heat of formation + Delta-G solvation = 91.399248 kcal Electronic energy + Delta-G solvation = -30125.311511 eV Core-core repulsion = 26210.081197 eV Total energy + Delta-G solvation = -3915.230314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34733 -40.15687 -38.01526 -36.96642 -34.66231 -33.69753 -32.96250 -32.15066 -31.06233 -30.47970 -29.88643 -26.47413 -25.34232 -24.77335 -24.13673 -22.89006 -22.55852 -21.67102 -20.76418 -19.59554 -18.54675 -17.67054 -17.21729 -16.85776 -16.18414 -15.61576 -15.19674 -15.08345 -14.76427 -14.56584 -14.37885 -14.31600 -14.20308 -13.64162 -13.57265 -13.25048 -13.09123 -13.02668 -12.89193 -12.57817 -12.46601 -12.26068 -12.17227 -11.73187 -11.11222 -10.98845 -10.86065 -10.81225 -10.79134 -10.62045 -10.37725 -10.01111 -9.93693 -9.67308 -9.60564 -9.24620 -8.85337 -8.58505 -8.43094 -8.19085 -6.63832 -5.67446 -2.83072 0.04496 0.47727 1.72109 2.66404 3.20403 3.41480 3.50306 3.53644 3.55847 3.95168 4.04718 4.26486 4.38030 4.51064 4.64306 4.65675 4.68457 4.76955 4.83094 4.87740 5.01513 5.10480 5.18308 5.31741 5.36913 5.42855 5.49069 5.55546 5.62091 5.70085 5.72447 5.78573 5.84557 5.88778 5.93732 6.01893 6.04130 6.10413 6.24956 6.28906 6.44560 6.45053 6.57805 6.84135 7.18760 7.57086 7.77766 7.79029 7.81985 8.50600 8.73444 9.61843 10.20560 10.54465 11.55836 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008486 B = 0.004522 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.778539 B = 6190.130107 C = 8697.801156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.021 4.021 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.206 4.206 8 H 0.068 0.932 9 N -0.692 5.692 10 C 0.156 3.844 11 C 0.144 3.856 12 H 0.072 0.928 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.101 3.899 17 N -0.610 5.610 18 C 0.514 3.486 19 O -0.431 6.431 20 C -0.144 4.144 21 C 0.157 3.843 22 N -0.463 5.463 23 C 0.073 3.927 24 C 0.161 3.839 25 N -0.476 5.476 26 C 0.068 3.932 27 C -0.136 4.136 28 C -0.079 4.079 29 C -0.016 4.016 30 H 0.252 0.748 31 H 0.380 0.620 32 H 0.018 0.982 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.169 0.831 43 H 0.171 0.829 44 H 0.157 0.843 45 H 0.142 0.858 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 -17.320 -8.173 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.216 4.216 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.334 5.334 10 C 0.029 3.971 11 C 0.041 3.959 12 H 0.090 0.910 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.171 4.171 16 C -0.023 4.023 17 N -0.348 5.348 18 C 0.298 3.702 19 O -0.299 6.299 20 C -0.151 4.151 21 C -0.017 4.017 22 N -0.172 5.172 23 C -0.050 4.050 24 C -0.012 4.012 25 N -0.185 5.185 26 C -0.075 4.075 27 C -0.156 4.156 28 C -0.086 4.086 29 C -0.043 4.043 30 H 0.061 0.939 31 H 0.213 0.787 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.186 0.814 43 H 0.188 0.812 44 H 0.174 0.826 45 H 0.160 0.840 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.255 -16.872 -8.912 19.357 hybrid contribution 1.464 1.304 0.612 2.054 sum -1.790 -15.568 -8.301 17.733 Atomic orbital electron populations 1.69660 1.05076 1.25176 1.58274 1.24653 0.95456 0.97430 1.04068 0.86144 0.78764 0.84507 0.77040 1.20684 1.22160 1.22120 1.19249 0.90912 0.84185 1.39491 0.91396 1.42345 1.05474 0.99928 1.85673 1.20987 0.93070 0.84684 0.98383 1.21527 0.93348 0.95613 0.85406 0.91045 1.21905 0.98125 0.94114 1.02436 1.21504 0.98709 0.98297 0.97031 1.21986 0.99876 0.97116 0.98160 1.22065 0.92408 0.85785 1.02025 1.47681 1.44316 1.24772 1.18029 1.17928 0.86254 0.83026 0.82958 1.91196 1.31946 1.32842 1.73883 1.21316 0.96185 1.02049 0.95557 1.23383 0.88782 0.91428 0.98075 1.67892 1.36320 1.14693 0.98266 1.19979 0.92217 0.99387 0.93454 1.23061 0.99475 0.93197 0.85470 1.67422 1.17252 1.10494 1.23367 1.22215 0.88357 0.97114 0.99805 1.21965 1.01673 1.00153 0.91833 1.18904 0.94591 1.00089 0.95002 1.21760 1.00137 0.92302 0.90105 0.93851 0.78665 0.96441 0.93812 0.91531 0.90776 0.91970 0.91741 0.91654 0.91096 0.91282 0.89851 0.81372 0.81169 0.82578 0.84026 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 2 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 3 Si 0.90 23.25 29.55 -169.99 -5.02 18.23 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 7 C -0.21 -5.93 9.71 -15.06 -0.15 -6.07 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.69 -17.75 3.24 -59.90 -0.19 -17.95 16 10 C 0.16 3.19 4.87 -4.04 -0.02 3.17 16 11 C 0.14 2.24 2.92 -67.60 -0.20 2.05 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.13 -1.50 5.36 -26.61 -0.14 -1.65 16 14 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16 15 C -0.13 -1.22 6.10 -26.38 -0.16 -1.38 16 16 C 0.10 1.09 4.84 -3.48 -0.02 1.07 16 17 N -0.61 -9.06 2.97 -166.06 -0.49 -9.55 16 18 C 0.51 9.23 6.74 -12.32 -0.08 9.14 16 19 O -0.43 -9.80 10.72 5.32 0.06 -9.74 16 20 C -0.14 -2.26 5.21 -104.78 -0.55 -2.81 16 21 C 0.16 2.22 8.51 -17.06 -0.15 2.08 16 22 N -0.46 -6.62 10.33 -10.65 -0.11 -6.73 16 23 C 0.07 1.02 6.62 -84.81 -0.56 0.46 16 24 C 0.16 1.99 11.25 -16.94 -0.19 1.80 16 25 N -0.48 -5.94 10.28 -13.11 -0.13 -6.07 16 26 C 0.07 0.74 11.08 -17.96 -0.20 0.54 16 27 C -0.14 -1.54 9.88 -39.38 -0.39 -1.93 16 28 C -0.08 -1.09 5.75 -106.80 -0.61 -1.70 16 29 C -0.02 -0.24 9.56 -38.48 -0.37 -0.61 16 30 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.38 10.38 7.08 -40.82 -0.29 10.09 16 32 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.04 0.97 6.29 -51.92 -0.33 0.64 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.08 0.87 4.63 -51.93 -0.24 0.63 16 42 H 0.17 2.07 6.30 -52.49 -0.33 1.73 16 43 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -34.70 367.11 -9.90 -44.60 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.22 Total: 7.71 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -4.03 Total: 2.19 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -0.21 Total: -68.52 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.06 Total: -9.74 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.70 -9.90 -44.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566943781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.001 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds