Wall clock time and date at job start Tue Mar 31 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47355 * 300.00200 * 3 2 1 6 6 H 1.48499 * 109.47178 * 60.00045 * 3 2 1 7 7 C 1.38811 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99824 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99711 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47194 * 175.29073 * 10 9 7 12 12 H 1.08997 * 109.58279 * 309.12332 * 11 10 9 13 13 C 1.53185 * 109.58481 * 188.69578 * 11 10 9 14 14 C 1.53042 * 109.30783 * 185.57675 * 13 11 10 15 15 C 1.53038 * 109.54062 * 61.36556 * 14 13 11 16 16 C 1.53630 * 109.24082 * 298.50980 * 15 14 13 17 17 N 1.46923 * 108.53866 * 54.85640 * 16 15 14 18 18 C 1.34779 * 120.62744 * 126.37185 * 17 16 15 19 19 O 1.21550 * 119.99810 * 186.18231 * 18 17 16 20 20 C 1.47857 * 120.00258 * 6.18710 * 18 17 16 21 21 C 1.40632 * 120.26227 * 37.72339 * 20 18 17 22 22 N 1.30859 * 121.66090 * 180.02562 * 21 20 18 23 23 C 1.33593 * 121.57845 * 359.97438 * 22 21 20 24 24 C 1.40642 * 121.62474 * 180.02562 * 23 22 21 25 25 N 1.31150 * 120.04177 * 179.97438 * 24 23 22 26 26 C 1.32494 * 122.88663 * 0.02562 * 25 24 23 27 27 C 1.36311 * 121.71296 * 0.25131 * 26 25 24 28 28 C 1.40603 * 118.65231 * 359.51083 * 27 26 25 29 29 C 1.38993 * 120.26227 * 217.70503 * 20 18 17 30 30 H 0.97001 * 120.00189 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99884 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47515 * 55.28897 * 10 9 7 33 33 H 1.09008 * 109.47012 * 295.28909 * 10 9 7 34 34 H 1.08997 * 109.49707 * 305.52308 * 13 11 10 35 35 H 1.08994 * 109.50108 * 65.62770 * 13 11 10 36 36 H 1.09005 * 109.45758 * 181.38315 * 14 13 11 37 37 H 1.09000 * 109.46368 * 301.34258 * 14 13 11 38 38 H 1.09005 * 109.49718 * 58.58560 * 15 14 13 39 39 H 1.09000 * 109.49756 * 178.65156 * 15 14 13 40 40 H 1.09001 * 109.73817 * 295.11690 * 16 15 14 41 41 H 1.08997 * 109.66095 * 174.54761 * 16 15 14 42 42 H 1.07998 * 119.17045 * 359.97438 * 21 20 18 43 43 H 1.08004 * 119.97763 * 359.96334 * 24 23 22 44 44 H 1.07997 * 119.14256 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.67171 * 179.74453 * 27 26 25 46 46 H 1.08004 * 121.10340 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0681 -4.8173 0.1179 12 1 0.3965 -4.6403 0.9579 13 6 1.8344 -6.1257 0.3361 14 6 0.8507 -7.2979 0.3145 15 6 0.1622 -7.3633 -1.0506 16 6 -0.6273 -6.0658 -1.2821 17 7 0.2877 -4.9274 -1.1220 18 6 0.4045 -3.9987 -2.0918 19 8 1.2442 -3.1249 -1.9984 20 6 -0.4887 -4.0429 -3.2692 21 6 -1.8375 -4.4127 -3.1221 22 7 -2.6520 -4.4614 -4.1452 23 6 -2.2418 -4.1614 -5.3807 24 6 -3.1164 -4.2129 -6.4809 25 7 -2.6808 -3.9114 -7.6807 26 6 -1.4287 -3.5516 -7.9220 27 6 -0.5004 -3.4757 -6.9267 28 6 -0.8953 -3.7794 -5.6119 29 6 -0.0021 -3.7188 -4.5302 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.7466 -3.6788 0.8442 33 1 2.6200 -3.7518 -0.9298 34 1 2.5698 -6.2533 -0.4582 35 1 2.3414 -6.0939 1.3004 36 1 1.3902 -8.2279 0.4940 37 1 0.1009 -7.1571 1.0930 38 1 0.9134 -7.4793 -1.8319 39 1 -0.5206 -8.2126 -1.0734 40 1 -1.4346 -5.9911 -0.5536 41 1 -1.0409 -6.0632 -2.2906 42 1 -2.2104 -4.6636 -2.1401 43 1 -4.1474 -4.5010 -6.3377 44 1 -1.1348 -3.3166 -8.9343 45 1 0.5168 -3.1844 -7.1431 46 1 1.0289 -3.4305 -4.6732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566943781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:17 Heat of formation + Delta-G solvation = 68.079838 kcal Electronic energy + Delta-G solvation = -30126.322717 eV Core-core repulsion = 26210.081197 eV Total energy + Delta-G solvation = -3916.241519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.45943 -41.38234 -39.07619 -38.19930 -36.39373 -34.81173 -34.22620 -33.64089 -32.26909 -31.54578 -31.40812 -27.85507 -26.62896 -26.01584 -25.29073 -24.33549 -23.72172 -22.99526 -21.88413 -20.70030 -19.73525 -19.13600 -18.55309 -18.19861 -17.32495 -16.86500 -16.68348 -16.24724 -16.11109 -15.72534 -15.56512 -15.40567 -15.25137 -15.16618 -15.05179 -14.53026 -14.35545 -14.15128 -14.10598 -13.70715 -13.68862 -13.56605 -13.37699 -13.11673 -12.84992 -12.68364 -12.13243 -12.07505 -11.94812 -11.86758 -11.72378 -11.50570 -11.37089 -11.11334 -10.91270 -10.69370 -10.40371 -9.92859 -9.56961 -9.48689 -8.66269 -7.86790 -5.05464 -1.00924 -0.60059 0.65467 1.42081 1.43527 1.53189 1.55432 1.97933 2.17012 2.59569 2.89199 3.00425 3.26592 3.34820 3.46690 3.48793 3.58952 3.62061 3.78661 3.83462 3.92552 4.03812 4.10842 4.17989 4.34250 4.35503 4.40055 4.47578 4.49802 4.60456 4.64928 4.71841 4.82087 4.88961 4.94595 4.99098 5.06032 5.12735 5.15695 5.20434 5.25591 5.33430 5.47143 5.50604 5.53768 5.79098 6.34747 6.48018 6.51843 6.82767 7.35921 7.42366 8.20939 8.43206 9.37993 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008486 B = 0.004522 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.778539 B = 6190.130107 C = 8697.801156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.301 1.301 6 H -0.292 1.292 7 C -0.208 4.208 8 H 0.063 0.937 9 N -0.705 5.705 10 C 0.160 3.840 11 C 0.148 3.852 12 H 0.069 0.931 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.093 3.907 17 N -0.603 5.603 18 C 0.522 3.478 19 O -0.493 6.493 20 C -0.162 4.162 21 C 0.157 3.843 22 N -0.463 5.463 23 C 0.059 3.941 24 C 0.159 3.841 25 N -0.482 5.482 26 C 0.071 3.929 27 C -0.135 4.135 28 C -0.093 4.093 29 C -0.014 4.014 30 H 0.244 0.756 31 H 0.367 0.633 32 H 0.016 0.984 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.185 0.815 43 H 0.193 0.807 44 H 0.192 0.808 45 H 0.167 0.833 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 -19.735 -9.557 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.274 4.274 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.229 1.229 6 H -0.220 1.220 7 C -0.341 4.341 8 H 0.081 0.919 9 N -0.346 5.346 10 C 0.033 3.967 11 C 0.045 3.955 12 H 0.087 0.913 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.165 4.165 16 C -0.029 4.029 17 N -0.339 5.339 18 C 0.307 3.693 19 O -0.366 6.366 20 C -0.169 4.169 21 C -0.017 4.017 22 N -0.172 5.172 23 C -0.064 4.064 24 C -0.014 4.014 25 N -0.191 5.191 26 C -0.071 4.071 27 C -0.155 4.155 28 C -0.100 4.100 29 C -0.041 4.041 30 H 0.053 0.947 31 H 0.199 0.801 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.202 0.798 43 H 0.209 0.791 44 H 0.209 0.791 45 H 0.184 0.816 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.884 -19.390 -10.314 22.303 hybrid contribution 1.600 1.835 0.745 2.546 sum -2.284 -17.555 -9.569 20.123 Atomic orbital electron populations 1.69814 1.06359 1.25053 1.61430 1.25332 0.96273 1.00357 1.05428 0.85185 0.78193 0.80767 0.76433 1.19430 1.22894 1.21972 1.19508 0.90855 0.85719 1.37980 0.91881 1.42340 1.04764 1.00719 1.86781 1.20994 0.93942 0.84715 0.97027 1.21439 0.92748 0.95763 0.85536 0.91310 1.21860 0.98280 0.92909 1.02729 1.21503 0.98372 0.97742 0.97390 1.21975 1.00023 0.96729 0.97794 1.22405 0.92412 0.85066 1.03004 1.47836 1.44133 1.25040 1.16891 1.18390 0.85164 0.82263 0.83458 1.91185 1.34562 1.35132 1.75722 1.21264 0.96816 1.03816 0.95020 1.23532 0.87968 0.91351 0.98853 1.67927 1.36076 1.14734 0.98458 1.20320 0.92732 0.99508 0.93864 1.23413 1.00224 0.92812 0.84933 1.67519 1.18083 1.10296 1.23235 1.22807 0.87582 0.95486 1.01260 1.22278 1.03160 0.99374 0.90703 1.19110 0.94490 1.00625 0.95811 1.21921 1.00504 0.91207 0.90445 0.94730 0.80134 0.96600 0.95644 0.92151 0.89778 0.89740 0.90872 0.92314 0.88112 0.89457 0.89336 0.79779 0.79054 0.79130 0.81562 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.10 13.06 21.65 0.28 -62.81 16 2 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16 3 Si 0.96 49.59 29.55 68.60 2.03 51.62 16 4 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 6 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 7 C -0.21 -12.45 9.71 84.03 0.82 -11.64 16 8 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.71 -37.96 3.24 -343.44 -1.11 -39.07 16 10 C 0.16 6.79 4.87 86.38 0.42 7.21 16 11 C 0.15 4.63 2.92 44.97 0.13 4.76 16 12 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.12 -2.64 5.36 30.67 0.16 -2.48 16 14 C -0.11 -1.74 5.88 30.62 0.18 -1.56 16 15 C -0.13 -1.91 6.10 30.82 0.19 -1.73 16 16 C 0.09 1.83 4.84 86.51 0.42 2.24 16 17 N -0.60 -17.83 2.97 -797.56 -2.37 -20.19 16 18 C 0.52 19.33 6.74 86.79 0.59 19.91 16 19 O -0.49 -23.68 10.72 -3.87 -0.04 -23.72 16 20 C -0.16 -5.17 5.21 -19.97 -0.10 -5.28 16 21 C 0.16 4.34 8.51 85.42 0.73 5.07 16 22 N -0.46 -12.71 10.33 -187.60 -1.94 -14.65 16 23 C 0.06 1.57 6.62 40.36 0.27 1.84 16 24 C 0.16 3.60 11.25 85.38 0.96 4.56 16 25 N -0.48 -10.75 10.28 -195.39 -2.01 -12.76 16 26 C 0.07 1.33 11.08 84.14 0.93 2.27 16 27 C -0.13 -2.76 9.88 22.40 0.22 -2.54 16 28 C -0.09 -2.48 5.75 -21.28 -0.12 -2.60 16 29 C -0.01 -0.42 9.56 22.98 0.22 -0.20 16 30 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.37 21.11 7.08 -92.71 -0.66 20.46 16 32 H 0.02 0.68 8.13 -2.39 -0.02 0.66 16 33 H 0.03 1.20 6.29 -2.38 -0.01 1.18 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.46 8.07 -2.39 -0.02 1.44 16 41 H 0.09 1.69 4.63 -2.39 -0.01 1.68 16 42 H 0.19 4.33 6.30 -2.91 -0.02 4.32 16 43 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.19 2.20 8.06 -2.91 -0.02 2.17 16 45 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 46 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -79.79 367.11 1.67 -78.12 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.36 Total: 28.26 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.47 Total: 15.21 kcal Atomic # 7 Polarization: -142.34 SS G_CDS: -7.14 Total: -149.48 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.03 Total: 51.62 kcal Total: -79.79 1.67 -78.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566943781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.197 kcal (2) G-P(sol) polarization free energy of solvation -79.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds