Wall clock time and date at job start Tue Mar 31 2020 22:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46974 * 299.99379 * 3 2 1 6 6 H 1.48499 * 109.47467 * 59.99679 * 3 2 1 7 7 C 1.37881 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99927 * 178.34042 * 7 2 1 9 9 C 1.50696 * 119.99903 * 358.34025 * 7 2 1 10 10 C 1.53009 * 112.99923 * 296.88464 * 9 7 2 11 11 O 1.45198 * 109.47039 * 298.27641 * 10 9 7 12 12 C 1.34226 * 116.99848 * 184.19181 * 11 10 9 13 13 O 1.20831 * 120.00218 * 5.39731 * 12 11 10 14 14 C 1.50700 * 120.00335 * 185.39380 * 12 11 10 15 15 C 1.52992 * 109.82569 * 153.27969 * 14 12 11 16 16 H 1.09008 * 109.48411 * 60.54295 * 15 14 12 17 17 C 1.53090 * 109.49007 * 300.51517 * 15 14 12 18 18 C 1.53185 * 109.16595 * 182.40569 * 17 15 14 19 19 C 1.53173 * 109.03760 * 56.97853 * 18 17 15 20 20 C 1.53093 * 109.16434 * 303.02238 * 19 18 17 21 21 O 1.42904 * 109.48083 * 180.56713 * 15 14 12 22 22 C 1.54390 * 109.90257 * 274.21370 * 14 12 11 23 23 C 1.55302 * 102.25191 * 98.19948 * 22 14 12 24 24 C 1.54947 * 100.94633 * 34.12846 * 23 22 14 25 25 O 1.43234 * 109.82963 * 32.38737 * 14 12 11 26 26 C 1.54032 * 113.81832 * 68.71497 * 9 7 2 27 27 O 1.44447 * 85.42520 * 91.80810 * 26 9 7 28 28 C 1.44177 * 93.38179 * 24.09051 * 27 26 9 29 29 H 0.96999 * 119.99728 * 5.02123 * 1 2 3 30 30 H 1.09000 * 109.46687 * 178.27455 * 10 9 7 31 31 H 1.09000 * 109.46835 * 58.28108 * 10 9 7 32 32 H 1.08998 * 109.51985 * 302.31000 * 17 15 14 33 33 H 1.08998 * 109.52246 * 62.49638 * 17 15 14 34 34 H 1.09000 * 109.54308 * 176.84924 * 18 17 15 35 35 H 1.09000 * 109.53751 * 297.02118 * 18 17 15 36 36 H 1.09000 * 109.52381 * 62.92312 * 19 18 17 37 37 H 1.09001 * 109.52398 * 183.11580 * 19 18 17 38 38 H 1.09000 * 109.48128 * 297.63033 * 20 19 18 39 39 H 1.08996 * 109.48606 * 177.59413 * 20 19 18 40 40 H 1.09003 * 110.84150 * 216.38555 * 22 14 12 41 41 H 1.08997 * 110.84837 * 340.00703 * 22 14 12 42 42 H 1.09002 * 111.12148 * 276.21341 * 23 22 14 43 43 H 1.09002 * 111.16211 * 152.06770 * 23 22 14 44 44 H 1.08995 * 110.31223 * 204.64036 * 24 23 22 45 45 H 1.09006 * 110.39199 * 82.50912 * 24 23 22 46 46 H 1.09004 * 113.86327 * 205.91375 * 26 9 7 47 47 H 1.09000 * 113.86501 * 337.61682 * 26 9 7 48 48 H 1.09000 * 113.86059 * 221.77278 * 28 27 26 49 49 H 1.08996 * 113.86707 * 90.06190 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1943 -0.0266 9 6 1.2515 -2.4988 0.0389 10 6 0.4328 -2.6792 1.3189 11 8 1.3234 -2.6883 2.4657 12 6 0.7697 -2.9254 3.6653 13 8 -0.4008 -3.2150 3.7439 14 6 1.6078 -2.8304 4.9141 15 6 0.7197 -2.4798 6.1096 16 1 -0.0296 -3.2595 6.2469 17 6 0.0226 -1.1412 5.8528 18 6 -0.8171 -0.7683 7.0785 19 6 0.0909 -0.7238 8.3114 20 6 0.7854 -2.0785 8.4732 21 8 1.5235 -2.3787 7.2868 22 6 2.3240 -4.1740 5.1699 23 6 3.7373 -3.9112 4.5823 24 6 3.9193 -2.4087 4.9144 25 8 2.6165 -1.8273 4.7472 26 6 0.4649 -2.8012 -1.2504 27 8 1.6571 -3.4961 -1.6772 28 6 2.1106 -3.7238 -0.3277 29 1 -0.4850 0.8368 -0.0735 30 1 -0.1101 -3.6232 1.2729 31 1 -0.2759 -1.8568 1.4157 32 1 0.7710 -0.3690 5.6753 33 1 -0.6251 -1.2293 4.9806 34 1 -1.2717 0.2104 6.9250 35 1 -1.5982 -1.5141 7.2260 36 1 0.8407 0.0569 8.1835 37 1 -0.5080 -0.5133 9.1975 38 1 0.0370 -2.8529 8.6413 39 1 1.4654 -2.0391 9.3242 40 1 2.3810 -4.3860 6.2376 41 1 1.8275 -4.9856 4.6380 42 1 3.7527 -4.0802 3.5056 43 1 4.4910 -4.5185 5.0837 44 1 4.6289 -1.9520 4.2246 45 1 4.2594 -2.2855 5.9427 46 1 -0.3955 -3.4533 -1.0994 47 1 0.2325 -1.9163 -1.8430 48 1 3.1807 -3.5690 -0.1901 49 1 1.7539 -4.6582 0.1056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646887765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:16 Heat of formation + Delta-G solvation = -207.696422 kcal Electronic energy + Delta-G solvation = -32741.486742 eV Core-core repulsion = 28441.392245 eV Total energy + Delta-G solvation = -4300.094497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.181 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.23832 -41.15454 -40.27825 -39.40875 -37.47103 -34.91969 -34.66594 -33.45026 -32.96862 -31.85108 -29.91471 -27.42394 -27.16711 -26.23613 -26.00194 -24.70524 -24.03694 -22.82683 -21.29136 -21.02658 -20.83173 -19.11784 -18.57062 -17.93330 -17.62760 -17.10686 -16.90965 -16.83059 -16.63891 -16.35612 -16.20946 -16.06056 -15.74083 -15.63030 -15.31876 -14.78598 -14.56710 -14.29337 -14.21455 -13.96288 -13.81754 -13.63112 -13.55113 -12.89047 -12.84460 -12.70041 -12.61973 -12.47689 -12.37826 -12.32520 -12.09122 -12.05482 -11.85562 -11.81384 -11.67143 -11.44572 -11.30031 -11.25345 -10.93338 -10.67588 -10.51853 -10.44751 -10.25560 -8.19441 -6.28682 0.97492 1.36820 1.40848 1.50262 1.64169 2.38570 2.71925 2.80608 2.97594 3.19996 3.30583 3.37509 3.57773 3.82405 3.84984 3.94474 4.01297 4.05169 4.12807 4.18274 4.23149 4.29868 4.42507 4.43377 4.44980 4.51726 4.56327 4.60769 4.70226 4.72701 4.76796 4.77771 4.86364 4.90600 4.93983 4.98734 5.08639 5.10837 5.14835 5.17244 5.24754 5.33226 5.43137 5.48254 5.60247 5.72621 5.89219 6.15985 6.20651 6.69908 6.75925 7.37770 8.86772 Molecular weight = 340.18amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004294 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.955497 B = 6519.335849 C = 7190.458567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.026 3.974 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.287 1.287 7 C -0.494 4.494 8 H 0.057 0.943 9 C 0.019 3.981 10 C 0.089 3.911 11 O -0.327 6.327 12 C 0.455 3.545 13 O -0.537 6.537 14 C 0.125 3.875 15 C 0.116 3.884 16 H 0.080 0.920 17 C -0.154 4.154 18 C -0.118 4.118 19 C -0.151 4.151 20 C 0.055 3.945 21 O -0.375 6.375 22 C -0.130 4.130 23 C -0.145 4.145 24 C 0.046 3.954 25 O -0.371 6.371 26 C 0.054 3.946 27 O -0.401 6.401 28 C 0.041 3.959 29 H 0.263 0.737 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 -7.138 18.240 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.214 1.214 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.018 3.982 10 C 0.014 3.986 11 O -0.241 6.241 12 C 0.299 3.701 13 O -0.429 6.429 14 C 0.083 3.917 15 C 0.058 3.942 16 H 0.098 0.902 17 C -0.192 4.192 18 C -0.155 4.155 19 C -0.189 4.189 20 C -0.021 4.021 21 O -0.295 6.295 22 C -0.168 4.168 23 C -0.182 4.182 24 C -0.030 4.030 25 O -0.290 6.290 26 C -0.023 4.023 27 O -0.320 6.320 28 C -0.035 4.035 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.141 0.859 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.361 -6.969 17.956 19.552 hybrid contribution -0.613 1.222 -0.515 1.461 sum 2.748 -5.747 17.440 18.567 Atomic orbital electron populations 1.69942 1.06813 1.27759 1.50564 1.25554 0.95637 1.01896 0.94321 0.85638 0.79480 0.80106 0.77339 1.18992 1.20265 1.21379 1.20825 0.92731 0.89563 1.50036 0.92461 1.21152 0.92988 0.94960 0.89067 1.23245 0.92362 0.99207 0.83741 1.86567 1.42369 1.79666 1.15517 1.24271 0.86910 0.72329 0.86576 1.90587 1.18297 1.46080 1.87941 1.21872 0.89539 0.92835 0.87418 1.21790 0.90953 0.97022 0.84480 0.90207 1.22139 0.99553 0.98085 0.99405 1.21574 0.97861 1.02286 0.93799 1.22183 0.99425 0.98839 0.98410 1.22886 0.96923 0.95523 0.86752 1.87849 1.34655 1.91553 1.15413 1.23174 0.95720 0.92958 1.04925 1.23284 0.96434 0.96280 1.02244 1.23644 0.83902 0.93366 1.02063 1.88562 1.15580 1.32741 1.92127 1.23880 0.87903 0.94351 0.96139 1.89501 1.38134 1.77906 1.26496 1.24112 1.00392 0.97327 0.81706 0.92749 0.93520 0.92286 0.92351 0.93675 0.91337 0.90991 0.91829 0.88231 0.91825 0.86124 0.86117 0.89636 0.90935 0.85926 0.89471 0.89873 0.91175 0.90862 0.89687 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.23 11.27 21.45 0.24 -50.99 16 2 C 0.03 1.40 5.27 84.66 0.45 1.85 16 3 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.49 -26.74 8.11 25.60 0.21 -26.53 16 8 H 0.06 3.12 7.80 -2.91 -0.02 3.10 16 9 C 0.02 0.92 0.57 -52.23 -0.03 0.89 16 10 C 0.09 4.27 4.69 71.99 0.34 4.61 16 11 O -0.33 -14.97 9.73 -46.36 -0.45 -15.42 16 12 C 0.46 18.64 5.89 71.24 0.42 19.06 16 13 O -0.54 -23.51 14.81 21.95 0.33 -23.18 16 14 C 0.13 4.07 0.67 -11.07 -0.01 4.06 16 15 C 0.12 3.39 1.63 30.62 0.05 3.44 16 16 H 0.08 2.26 7.90 -2.38 -0.02 2.24 16 17 C -0.15 -4.99 4.99 30.69 0.15 -4.84 16 18 C -0.12 -2.80 6.03 30.71 0.19 -2.61 16 19 C -0.15 -2.73 6.14 30.68 0.19 -2.54 16 20 C 0.05 0.94 6.84 72.01 0.49 1.43 16 21 O -0.38 -9.14 9.43 -139.35 -1.31 -10.45 16 22 C -0.13 -3.11 5.98 31.86 0.19 -2.92 16 23 C -0.15 -3.14 7.16 32.05 0.23 -2.91 16 24 C 0.05 1.18 7.78 72.65 0.56 1.75 16 25 O -0.37 -13.12 9.69 -126.87 -1.23 -14.35 16 26 C 0.05 2.56 8.01 72.29 0.58 3.14 16 27 O -0.40 -18.72 12.41 -148.98 -1.85 -20.57 16 28 C 0.04 1.73 8.34 72.30 0.60 2.34 16 29 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 30 H 0.05 2.09 7.98 -2.39 -0.02 2.07 16 31 H 0.06 3.26 6.67 -2.39 -0.02 3.24 16 32 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 33 H 0.04 1.75 6.59 -2.39 -0.02 1.73 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.12 2.33 7.23 -2.39 -0.02 2.31 16 41 H 0.09 2.00 7.82 -2.39 -0.02 1.98 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.07 2.97 8.10 -2.38 -0.02 2.95 16 47 H 0.07 3.76 7.76 -2.39 -0.02 3.74 16 48 H 0.08 3.44 8.08 -2.39 -0.02 3.42 16 49 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 Total: -1.00 -67.10 387.73 3.29 -63.81 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.93 Total: 24.58 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 4.61 Total: 0.21 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.24 Total: -50.99 kcal Atomic # 8 Polarization: -79.46 SS G_CDS: -4.52 Total: -83.98 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -67.10 3.29 -63.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646887765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.890 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds