Wall clock time and date at job start Tue Mar 31 2020 22:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47113 * 270.00244 * 3 2 1 5 5 H 1.48504 * 109.46990 * 30.00035 * 3 2 1 6 6 H 1.48497 * 109.47463 * 150.00215 * 3 2 1 7 7 C 1.37876 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00390 * 179.57952 * 7 2 1 9 9 C 1.50704 * 119.99580 * 359.57689 * 7 2 1 10 10 C 1.52988 * 113.08386 * 306.90790 * 9 7 2 11 11 O 1.45202 * 109.47302 * 285.36560 * 10 9 7 12 12 C 1.34227 * 117.00280 * 184.92638 * 11 10 9 13 13 O 1.20828 * 120.00149 * 354.88009 * 12 11 10 14 14 C 1.50704 * 120.00216 * 174.87645 * 12 11 10 15 15 C 1.52997 * 109.82362 * 154.45138 * 14 12 11 16 16 H 1.09003 * 109.48241 * 185.68602 * 15 14 12 17 17 C 1.53103 * 109.47971 * 305.70209 * 15 14 12 18 18 C 1.53185 * 109.15936 * 177.59102 * 17 15 14 19 19 C 1.53173 * 109.03503 * 303.02023 * 18 17 15 20 20 C 1.53089 * 109.16565 * 56.98571 * 19 18 17 21 21 O 1.42900 * 109.48031 * 65.64514 * 15 14 12 22 22 C 1.54373 * 109.83147 * 275.43286 * 14 12 11 23 23 C 1.55313 * 102.25528 * 98.15568 * 22 14 12 24 24 C 1.54945 * 100.93678 * 34.13087 * 23 22 14 25 25 O 1.43237 * 109.82587 * 33.56567 * 14 12 11 26 26 C 1.54035 * 113.81266 * 174.99783 * 9 7 2 27 27 O 1.44172 * 85.52315 * 268.35756 * 26 9 7 28 28 C 1.44184 * 93.33616 * 335.80736 * 27 26 9 29 29 H 0.97004 * 119.99525 * 5.00112 * 1 2 3 30 30 H 1.08996 * 109.47453 * 45.36485 * 10 9 7 31 31 H 1.09000 * 109.47400 * 165.36739 * 10 9 7 32 32 H 1.08995 * 109.51959 * 297.49944 * 17 15 14 33 33 H 1.09002 * 109.52004 * 57.69018 * 17 15 14 34 34 H 1.08999 * 109.54101 * 62.89145 * 18 17 15 35 35 H 1.08997 * 109.53797 * 183.06149 * 18 17 15 36 36 H 1.09000 * 109.51667 * 176.88731 * 19 18 17 37 37 H 1.08997 * 109.52307 * 297.00936 * 19 18 17 38 38 H 1.09000 * 109.48123 * 62.36731 * 20 19 18 39 39 H 1.09004 * 109.48246 * 182.39636 * 20 19 18 40 40 H 1.09005 * 110.84790 * 216.34624 * 22 14 12 41 41 H 1.08998 * 110.84970 * 339.96303 * 22 14 12 42 42 H 1.09004 * 111.12009 * 276.21605 * 23 22 14 43 43 H 1.08997 * 111.15941 * 152.06680 * 23 22 14 44 44 H 1.09005 * 110.30514 * 204.64258 * 24 23 22 45 45 H 1.09000 * 110.39608 * 82.51859 * 24 23 22 46 46 H 1.09003 * 113.86608 * 22.50520 * 26 9 7 47 47 H 1.09000 * 113.86199 * 154.20292 * 26 9 7 48 48 H 1.08994 * 113.86843 * 270.04168 * 28 27 26 49 49 H 1.09001 * 113.98224 * 138.35248 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0074 9 6 1.2510 -2.4991 0.0085 10 6 0.2264 -2.5923 1.1408 11 8 0.9149 -2.8149 2.3996 12 6 0.1510 -3.0222 3.4837 13 8 -1.0507 -2.9263 3.4033 14 6 0.7923 -3.3746 4.8012 15 6 -0.1207 -2.9493 5.9528 16 1 0.3902 -3.1138 6.9016 17 6 -0.4654 -1.4645 5.8094 18 6 -1.4273 -1.0610 6.9313 19 6 -2.6696 -1.9549 6.8696 20 6 -2.2398 -3.4206 6.9721 21 8 -1.3226 -3.7215 5.9183 22 6 1.0494 -4.8953 4.8683 23 6 2.5479 -4.9942 4.4722 24 6 3.1027 -3.6871 5.0922 25 8 2.0590 -2.7160 4.9165 26 6 2.1550 -3.7401 -0.1161 27 8 1.9381 -3.6158 -1.5360 28 6 0.6945 -2.9055 -1.3691 29 1 -0.4849 0.8369 -0.0732 30 1 -0.3398 -1.6625 1.1959 31 1 -0.4544 -3.4213 0.9475 32 1 0.4459 -0.8706 5.8797 33 1 -0.9399 -1.2924 4.8433 34 1 -0.9354 -1.1862 7.8959 35 1 -1.7196 -0.0188 6.8036 36 1 -3.3348 -1.7116 7.6982 37 1 -3.1892 -1.7918 5.9254 38 1 -1.7568 -3.5914 7.9342 39 1 -3.1160 -4.0633 6.8860 40 1 0.8897 -5.2715 5.8789 41 1 0.4229 -5.4267 4.1520 42 1 2.6683 -4.9971 3.3888 43 1 3.0161 -5.8710 4.9195 44 1 4.0046 -3.3724 4.5671 45 1 3.3130 -3.8290 6.1523 46 1 3.1869 -3.5665 0.1892 47 1 1.7263 -4.6433 0.3181 48 1 -0.1802 -3.5539 -1.3176 49 1 0.5658 -2.0697 -2.0568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646887766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:20 Heat of formation + Delta-G solvation = -185.010997 kcal Electronic energy + Delta-G solvation = -32858.331591 eV Core-core repulsion = 28559.220808 eV Total energy + Delta-G solvation = -4299.110783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.181 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85280 -39.39154 -38.66558 -38.37298 -35.52949 -33.61916 -32.98094 -32.25149 -31.97388 -29.85115 -28.73664 -25.51053 -25.35297 -24.94373 -24.35962 -23.73206 -22.53625 -21.77000 -20.31419 -19.54293 -18.95971 -17.65142 -16.90341 -16.35104 -15.98499 -15.85559 -15.62693 -15.21525 -14.86800 -14.77300 -14.65746 -14.50781 -14.32837 -14.30076 -13.92044 -13.58155 -13.36632 -13.24183 -12.63557 -12.61412 -12.11605 -11.84057 -11.80891 -11.76452 -11.51009 -11.35906 -11.27278 -11.15501 -10.97156 -10.87377 -10.77146 -10.62796 -10.40900 -10.28174 -10.21730 -9.94198 -9.76638 -9.37228 -9.30538 -9.18984 -8.97238 -8.58472 -8.38069 -6.11891 -4.20508 2.69162 3.27836 3.34697 3.36356 3.38831 3.52331 4.12241 4.34911 4.41954 4.51391 4.80361 4.85371 4.87753 4.93201 4.94695 5.06583 5.11235 5.14605 5.17294 5.24332 5.36253 5.53352 5.56532 5.65287 5.68024 5.73144 5.75205 5.86553 5.88813 6.00746 6.07624 6.11014 6.14076 6.18400 6.18820 6.23535 6.32658 6.45100 6.48929 6.73402 6.88973 6.98392 7.14853 7.26147 7.26976 7.45765 7.53084 7.86975 8.22287 8.61876 8.78318 9.44469 10.91319 Molecular weight = 340.18amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.004463 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.225167 B = 6271.698172 C = 7081.539128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.484 4.484 8 H 0.066 0.934 9 C 0.036 3.964 10 C 0.067 3.933 11 O -0.330 6.330 12 C 0.455 3.545 13 O -0.493 6.493 14 C 0.127 3.873 15 C 0.107 3.893 16 H 0.069 0.931 17 C -0.159 4.159 18 C -0.117 4.117 19 C -0.157 4.157 20 C 0.066 3.934 21 O -0.359 6.359 22 C -0.129 4.129 23 C -0.158 4.158 24 C 0.050 3.950 25 O -0.344 6.344 26 C 0.033 3.967 27 O -0.390 6.390 28 C 0.044 3.956 29 H 0.265 0.735 30 H 0.117 0.883 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -8.004 15.556 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.084 0.916 9 C 0.035 3.965 10 C -0.006 4.006 11 O -0.244 6.244 12 C 0.296 3.704 13 O -0.382 6.382 14 C 0.086 3.914 15 C 0.049 3.951 16 H 0.087 0.913 17 C -0.197 4.197 18 C -0.154 4.154 19 C -0.195 4.195 20 C -0.011 4.011 21 O -0.278 6.278 22 C -0.167 4.167 23 C -0.195 4.195 24 C -0.026 4.026 25 O -0.263 6.263 26 C -0.044 4.044 27 O -0.308 6.308 28 C -0.034 4.034 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.587 -7.804 15.160 17.061 hybrid contribution 0.065 1.000 0.261 1.036 sum -0.522 -6.803 15.421 16.863 Atomic orbital electron populations 1.69704 1.05915 1.27428 1.49768 1.24975 0.94962 0.99421 0.94283 0.86442 0.79919 0.82737 0.78158 1.20527 1.21137 1.19594 1.20663 0.92945 0.88285 1.50261 0.91584 1.21046 0.91642 0.94448 0.89338 1.23740 0.95657 1.02174 0.79062 1.86492 1.41093 1.79420 1.17436 1.23255 0.86213 0.74374 0.86526 1.90646 1.15600 1.46338 1.85615 1.21784 0.85765 0.94031 0.89859 1.21948 0.85745 0.91740 0.95645 0.91347 1.22326 1.00609 0.95562 1.01161 1.21526 0.95853 0.99786 0.98243 1.22180 0.98258 0.95961 1.03051 1.22515 0.92943 0.95807 0.89819 1.87992 1.28544 1.60548 1.50677 1.23003 0.97154 0.92689 1.03855 1.23353 0.94497 0.98468 1.03185 1.23475 0.91560 0.87898 0.99712 1.88581 1.13296 1.31049 1.93355 1.23991 1.01052 0.97640 0.81708 1.89473 1.38792 1.78656 1.23925 1.24037 0.85772 0.93835 0.99729 0.92438 0.86502 0.95210 0.90361 0.89417 0.92281 0.91441 0.91329 0.90529 0.93711 0.88914 0.89175 0.89305 0.89206 0.89521 0.88775 0.92134 0.90383 0.92931 0.93294 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 11.02 55.43 0.61 -23.87 16 2 C 0.07 1.76 5.32 -17.82 -0.09 1.66 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.48 -13.01 8.37 -34.44 -0.29 -13.30 16 8 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 9 C 0.04 0.88 0.67 -154.58 -0.10 0.78 16 10 C 0.07 1.63 4.76 37.15 0.18 1.81 16 11 O -0.33 -7.53 9.71 -44.40 -0.43 -7.97 16 12 C 0.46 9.44 5.83 36.01 0.21 9.65 16 13 O -0.49 -11.22 13.67 -25.14 -0.34 -11.56 16 14 C 0.13 2.06 0.72 -91.05 -0.07 1.99 16 15 C 0.11 1.58 1.89 -26.68 -0.05 1.53 16 16 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.16 -2.48 4.97 -26.58 -0.13 -2.62 16 18 C -0.12 -1.43 6.03 -26.55 -0.16 -1.59 16 19 C -0.16 -1.81 6.14 -26.60 -0.16 -1.98 16 20 C 0.07 0.75 6.84 37.20 0.25 1.01 16 21 O -0.36 -5.39 8.77 -53.94 -0.47 -5.86 16 22 C -0.13 -1.67 5.64 -24.79 -0.14 -1.81 16 23 C -0.16 -1.77 7.16 -24.48 -0.18 -1.94 16 24 C 0.05 0.60 7.78 38.18 0.30 0.89 16 25 O -0.34 -5.61 10.13 -49.04 -0.50 -6.11 16 26 C 0.03 0.72 8.10 37.61 0.30 1.03 16 27 O -0.39 -9.24 12.40 -35.23 -0.44 -9.68 16 28 C 0.04 1.03 8.34 37.61 0.31 1.34 16 29 H 0.27 7.03 8.32 -40.82 -0.34 6.69 16 30 H 0.12 3.23 5.62 -51.93 -0.29 2.94 16 31 H 0.03 0.70 7.83 -51.93 -0.41 0.29 16 32 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 33 H 0.09 1.70 6.00 -51.93 -0.31 1.38 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 41 H 0.09 1.22 7.82 -51.93 -0.41 0.81 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 1.65 8.08 -51.93 -0.42 1.23 16 47 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 48 H 0.05 1.06 7.92 -51.93 -0.41 0.64 16 49 H 0.09 2.17 8.09 -51.93 -0.42 1.75 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -31.02 386.05 -8.69 -39.71 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.10 Total: 4.88 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 0.18 Total: -1.54 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.61 Total: -23.87 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -2.18 Total: -41.17 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.02 -8.69 -39.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646887766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.298 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds