Wall clock time and date at job start Tue Mar 31 2020 22:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99900 * 2 1 4 4 H 1.48494 * 109.46818 * 269.99810 * 3 2 1 5 5 H 1.48505 * 109.46955 * 29.99672 * 3 2 1 6 6 H 1.48497 * 109.46952 * 149.99597 * 3 2 1 7 7 C 1.38803 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00214 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99654 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46724 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.01971 * 306.39033 * 11 10 9 13 13 C 1.54268 * 110.03522 * 67.83308 * 11 10 9 14 14 C 1.54884 * 104.19796 * 142.89193 * 13 11 10 15 15 C 1.54886 * 102.75199 * 322.06049 * 14 13 11 16 16 C 1.53881 * 110.03168 * 184.99771 * 11 10 9 17 17 H 1.09003 * 110.02858 * 121.43045 * 16 11 10 18 18 N 1.46492 * 110.03118 * 0.02562 * 16 11 10 19 19 C 1.34777 * 120.00201 * 154.99969 * 18 16 11 20 20 O 1.21531 * 119.99496 * 0.02562 * 19 18 16 21 21 C 1.48005 * 120.00325 * 179.97438 * 19 18 16 22 22 C 1.38887 * 121.16918 * 354.24386 * 21 19 18 23 23 C 1.39346 * 119.67331 * 179.82445 * 22 21 19 24 24 N 1.31102 * 121.89994 * 0.43953 * 23 22 21 25 25 C 1.33285 * 121.61832 * 359.79319 * 24 23 22 26 26 C 1.40833 * 121.90888 * 179.97438 * 25 24 23 27 27 C 1.36167 * 118.76917 * 180.02562 * 26 25 24 28 28 N 1.32539 * 121.95579 * 359.97438 * 27 26 25 29 29 C 1.31336 * 122.60816 * 0.02562 * 28 27 26 30 30 C 1.40089 * 119.87713 * 0.02562 * 29 28 27 31 31 H 0.97008 * 120.00480 * 0.02562 * 1 2 3 32 32 H 0.96993 * 120.00026 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47594 * 59.99851 * 10 9 7 34 34 H 1.09000 * 109.47107 * 299.99230 * 10 9 7 35 35 H 1.09002 * 110.48268 * 261.57787 * 13 11 10 36 36 H 1.09002 * 110.48474 * 24.08165 * 13 11 10 37 37 H 1.09006 * 110.75509 * 80.37506 * 14 13 11 38 38 H 1.09003 * 110.75539 * 203.55222 * 14 13 11 39 39 H 1.09003 * 110.48272 * 279.26252 * 15 14 13 40 40 H 1.08999 * 110.48853 * 156.61853 * 15 14 13 41 41 H 0.97005 * 120.00670 * 334.99747 * 18 16 11 42 42 H 1.07997 * 120.15979 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.04942 * 180.21202 * 23 22 21 44 44 H 1.07997 * 120.61834 * 0.02562 * 26 25 24 45 45 H 1.08002 * 119.02042 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.06414 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8196 0.0012 12 1 0.3599 -4.7082 0.8259 13 6 0.3043 -4.8663 -1.3407 14 6 0.1415 -6.3786 -1.6327 15 6 1.4873 -6.9682 -1.1426 16 6 1.8161 -6.1561 0.1271 17 1 1.4765 -6.6936 1.0125 18 7 3.2586 -5.9142 0.2093 19 6 4.0602 -6.8166 0.8090 20 8 3.5862 -7.8312 1.2812 21 6 5.5176 -6.5725 0.8915 22 6 6.1010 -5.4830 0.2578 23 6 7.4760 -5.2810 0.3592 24 7 8.2485 -6.0982 1.0331 25 6 7.7568 -7.1657 1.6616 26 6 8.5810 -8.0479 2.3867 27 6 8.0109 -9.1193 3.0041 28 7 6.7078 -9.3533 2.9419 29 6 5.8794 -8.5743 2.2847 30 6 6.3670 -7.4452 1.6139 31 1 -0.4851 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7144 0.8905 34 1 2.6847 -3.7144 -0.8895 35 1 -0.6710 -4.3893 -1.2437 36 1 0.8871 -4.3847 -2.1259 37 1 -0.6916 -6.7941 -1.0656 38 1 0.0056 -6.5536 -2.7000 39 1 2.2622 -6.8282 -1.8963 40 1 1.3754 -8.0252 -0.9010 41 1 3.6370 -5.1046 -0.1680 42 1 5.4914 -4.7940 -0.3079 43 1 7.9186 -4.4285 -0.1347 44 1 9.6455 -7.8777 2.4520 45 1 8.6391 -9.7982 3.5616 46 1 4.8243 -8.8037 2.2614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699028162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:02 Heat of formation + Delta-G solvation = 47.329357 kcal Electronic energy + Delta-G solvation = -29020.200307 eV Core-core repulsion = 25103.058979 eV Total energy + Delta-G solvation = -3917.141327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67751 -40.14056 -38.34071 -38.11770 -34.49374 -34.20315 -33.56925 -31.83059 -31.51738 -30.73484 -28.68643 -27.83522 -25.59460 -24.68982 -24.44424 -23.55764 -22.62115 -21.23252 -20.60591 -19.30143 -18.88426 -18.37182 -17.59758 -17.10851 -16.50982 -16.07244 -15.50053 -15.27956 -15.24654 -14.99021 -14.77330 -14.55250 -14.50459 -14.08878 -13.75396 -13.54202 -13.38578 -13.09339 -13.04832 -13.00007 -12.32897 -12.28290 -11.81470 -11.42364 -10.95996 -10.94189 -10.91468 -10.89101 -10.67061 -10.57798 -10.49218 -10.37661 -10.06127 -10.02721 -9.79081 -9.65407 -9.52217 -9.22544 -8.96935 -8.79097 -7.03985 -5.86175 -3.15873 -0.36414 0.36107 1.25596 2.49822 2.80538 2.91114 3.36630 3.41831 3.43913 3.78825 3.80350 4.09788 4.17624 4.24074 4.37850 4.39937 4.47765 4.63516 4.70491 4.85961 4.98650 5.00536 5.11517 5.25893 5.34051 5.43040 5.44058 5.51111 5.54718 5.58621 5.60545 5.66490 5.75361 5.81764 5.95928 5.99620 6.07064 6.11181 6.17758 6.32995 6.34665 6.44312 6.48438 6.57947 6.68666 7.25948 7.38513 7.58255 7.68296 7.91880 8.31939 9.43751 9.99931 10.34408 11.36336 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.003096 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.620827 B = 9040.856310 C =11028.944595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.156 3.844 11 C -0.109 4.109 12 H 0.085 0.915 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.147 3.853 17 H 0.095 0.905 18 N -0.704 5.704 19 C 0.558 3.442 20 O -0.529 6.529 21 C -0.045 4.045 22 C -0.141 4.141 23 C 0.152 3.848 24 N -0.463 5.463 25 C 0.153 3.847 26 C -0.150 4.150 27 C 0.092 3.908 28 N -0.489 5.489 29 C 0.161 3.839 30 C -0.134 4.134 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.020 0.980 34 H 0.016 0.984 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.409 0.591 42 H 0.150 0.850 43 H 0.174 0.826 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.340 -16.514 -0.837 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.028 3.972 11 C -0.128 4.128 12 H 0.103 0.897 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.043 3.957 17 H 0.113 0.887 18 N -0.357 5.357 19 C 0.344 3.656 20 O -0.407 6.407 21 C -0.058 4.058 22 C -0.162 4.162 23 C -0.021 4.021 24 N -0.172 5.172 25 C 0.026 3.974 26 C -0.170 4.170 27 C -0.052 4.052 28 N -0.197 5.197 29 C -0.010 4.010 30 C -0.138 4.138 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.249 0.751 42 H 0.168 0.832 43 H 0.191 0.809 44 H 0.164 0.836 45 H 0.177 0.823 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 11.858 -17.800 0.111 21.388 hybrid contribution -0.078 2.200 -0.712 2.313 sum 11.780 -15.600 -0.601 19.557 Atomic orbital electron populations 1.69652 1.05139 1.25807 1.57258 1.24742 0.95513 0.97739 1.02700 0.86208 0.78691 0.83826 0.77544 1.21648 1.21721 1.20728 1.19179 0.90950 0.84117 1.43341 0.91235 1.42301 1.05907 0.99615 1.89329 1.20690 0.93459 0.85885 0.97152 1.22244 0.98030 0.93198 0.99318 0.89674 1.22364 1.00899 0.95150 0.96540 1.22487 0.96701 0.96226 1.00817 1.22765 0.97994 0.99465 0.96810 1.21795 0.78127 0.96509 0.99309 0.88728 1.46333 1.08443 1.23374 1.57537 1.18037 0.85281 0.83714 0.78541 1.90587 1.75620 1.26985 1.47551 1.20373 0.93843 0.94885 0.96702 1.22610 0.97197 0.97081 0.99274 1.23184 0.89832 0.96642 0.92469 1.67880 1.39094 1.02913 1.07295 1.18931 0.90117 0.93051 0.95268 1.21708 1.01256 0.95159 0.98912 1.22409 0.91460 0.95334 0.96045 1.67747 1.04288 1.30289 1.17381 1.24468 1.01920 0.87177 0.87442 1.19666 0.94325 0.98585 1.01273 0.93399 0.78069 0.96234 0.96652 0.91057 0.90935 0.91441 0.91507 0.91261 0.91223 0.75144 0.83205 0.80913 0.83558 0.82317 0.78373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 2 C -0.01 -0.29 5.50 -17.44 -0.10 -0.38 16 3 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 8 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 9 N -0.73 -16.92 5.45 -59.91 -0.33 -17.24 16 10 C 0.16 2.72 4.18 -4.04 -0.02 2.70 16 11 C -0.11 -1.55 2.96 -89.50 -0.27 -1.82 16 12 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.11 -1.51 6.08 -25.07 -0.15 -1.67 16 14 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 15 C -0.13 -1.45 6.53 -25.07 -0.16 -1.62 16 16 C 0.15 1.82 3.22 -66.81 -0.22 1.60 16 17 H 0.09 1.23 7.57 -51.93 -0.39 0.84 16 18 N -0.70 -8.33 4.35 -53.61 -0.23 -8.56 16 19 C 0.56 7.08 7.76 -12.26 -0.10 6.99 16 20 O -0.53 -7.72 13.26 5.34 0.07 -7.65 16 21 C -0.04 -0.52 5.93 -104.37 -0.62 -1.14 16 22 C -0.14 -1.34 9.60 -38.93 -0.37 -1.72 16 23 C 0.15 1.42 11.14 -17.45 -0.19 1.23 16 24 N -0.46 -5.35 10.33 -10.95 -0.11 -5.46 16 25 C 0.15 1.86 6.63 -84.88 -0.56 1.30 16 26 C -0.15 -1.54 10.08 -39.35 -0.40 -1.93 16 27 C 0.09 0.93 11.06 -17.99 -0.20 0.73 16 28 N -0.49 -6.17 10.31 -13.24 -0.14 -6.31 16 29 C 0.16 2.11 10.52 -17.07 -0.18 1.93 16 30 C -0.13 -1.70 5.77 -106.55 -0.61 -2.31 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.39 9.56 7.55 -40.82 -0.31 9.26 16 33 H 0.02 0.35 7.42 -51.93 -0.39 -0.03 16 34 H 0.02 0.26 7.11 -51.93 -0.37 -0.11 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.41 4.51 4.08 -40.82 -0.17 4.34 16 42 H 0.15 1.11 6.56 -52.49 -0.34 0.76 16 43 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.20 2.69 5.09 -52.49 -0.27 2.42 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -31.92 373.69 -9.85 -41.77 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.98 Total: 11.92 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -4.47 Total: -4.21 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.08 Total: -63.92 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.07 Total: -7.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.92 -9.85 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699028162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.100 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds