Wall clock time and date at job start Tue Mar 31 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48502 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46951 * 300.00074 * 3 2 1 6 6 H 1.48501 * 109.46800 * 59.99945 * 3 2 1 7 7 C 1.38815 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00348 * 179.97438 * 7 2 1 9 9 N 1.36947 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99859 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46796 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.53837 * 307.60975 * 11 10 9 13 13 C 1.54886 * 110.48420 * 70.22984 * 11 10 9 14 14 C 1.54890 * 102.74774 * 156.61956 * 13 11 10 15 15 C 1.54269 * 104.19342 * 322.05464 * 14 13 11 16 16 C 1.53873 * 106.60006 * 23.61031 * 15 14 13 17 17 H 1.09000 * 110.03313 * 119.33002 * 16 15 14 18 18 N 1.46495 * 110.03069 * 240.71621 * 16 15 14 19 19 C 1.34774 * 120.00075 * 273.54531 * 18 16 15 20 20 O 1.21492 * 119.99836 * 0.02562 * 19 18 16 21 21 C 1.48380 * 120.00446 * 180.02562 * 19 18 16 22 22 C 1.40212 * 119.22287 * 179.97438 * 21 19 18 23 23 C 1.36647 * 119.90565 * 180.02562 * 22 21 19 24 24 C 1.40558 * 118.11199 * 0.25871 * 23 22 21 25 25 C 1.40401 * 122.07166 * 180.32551 * 24 23 22 26 26 N 1.31244 * 119.87562 * 179.67575 * 25 24 23 27 27 C 1.32604 * 122.68499 * 359.73451 * 26 25 24 28 28 C 1.36090 * 121.99259 * 0.02562 * 27 26 25 29 29 C 1.40951 * 118.76984 * 359.97438 * 28 27 26 30 30 N 1.31987 * 119.21624 * 0.02562 * 21 19 18 31 31 H 0.96994 * 120.00227 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99615 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47158 * 60.00065 * 10 9 7 34 34 H 1.09002 * 109.47161 * 300.00148 * 10 9 7 35 35 H 1.08990 * 110.76283 * 38.29997 * 13 11 10 36 36 H 1.09001 * 110.75046 * 274.92991 * 13 11 10 37 37 H 1.09000 * 110.48772 * 203.37553 * 14 13 11 38 38 H 1.08998 * 110.48546 * 80.73177 * 14 13 11 39 39 H 1.08992 * 110.02730 * 264.32421 * 15 14 13 40 40 H 1.09001 * 110.06803 * 142.92006 * 15 14 13 41 41 H 0.96998 * 120.00027 * 93.54982 * 18 16 15 42 42 H 1.07992 * 120.04713 * 0.02562 * 22 21 19 43 43 H 1.08002 * 120.94026 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.05652 * 359.41037 * 25 24 23 45 45 H 1.08006 * 119.00066 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.61989 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8198 -0.0001 12 1 0.3415 -4.7058 0.8082 13 6 0.3391 -4.9125 -1.3658 14 6 -0.1115 -6.3936 -1.4137 15 6 1.0599 -7.1663 -0.7729 16 6 1.8072 -6.1656 0.1259 17 1 1.7892 -6.5075 1.1607 18 7 3.1917 -6.0188 -0.3298 19 6 4.1396 -6.8704 0.1093 20 8 3.8457 -7.7601 0.8827 21 6 5.5421 -6.7214 -0.3517 22 6 6.5150 -7.6161 0.1160 23 6 7.8110 -7.4914 -0.2991 24 6 8.1239 -6.4499 -1.1895 25 6 9.4263 -6.2494 -1.6741 26 7 9.6690 -5.2666 -2.5094 27 6 8.7250 -4.4372 -2.9329 28 6 7.4311 -4.5496 -2.5266 29 6 7.0892 -5.5809 -1.6287 30 7 5.8443 -5.7491 -1.1915 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.6848 -3.7146 0.8906 34 1 2.6848 -3.7145 -0.8894 35 1 1.0252 -4.6908 -2.1831 36 1 -0.5227 -4.2456 -1.3918 37 1 -0.2610 -6.7138 -2.4449 38 1 -1.0237 -6.5338 -0.8337 39 1 1.7273 -7.5427 -1.5481 40 1 0.6791 -7.9939 -0.1743 41 1 3.4263 -5.3087 -0.9474 42 1 6.2407 -8.4027 0.8032 43 1 8.5739 -8.1710 0.0508 44 1 10.2277 -6.9001 -1.3567 45 1 8.9914 -3.6481 -3.6206 46 1 6.6801 -3.8614 -2.8854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715567805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:09 Heat of formation + Delta-G solvation = 39.486418 kcal Electronic energy + Delta-G solvation = -28864.247319 eV Core-core repulsion = 24946.765896 eV Total energy + Delta-G solvation = -3917.481423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61665 -40.14426 -38.53695 -37.59676 -34.43249 -34.20108 -33.41838 -31.94817 -31.42735 -30.78546 -28.61682 -27.91461 -25.83627 -24.61805 -24.38827 -23.04397 -22.33108 -21.55464 -20.32956 -19.29070 -18.92772 -18.49423 -17.59121 -17.12619 -16.36024 -15.98407 -15.52794 -15.21274 -15.00019 -14.84185 -14.73963 -14.51750 -14.44793 -14.03464 -13.64632 -13.58222 -13.34802 -13.05625 -12.95112 -12.83744 -12.59067 -12.30358 -11.57200 -11.27977 -11.10847 -10.89553 -10.88955 -10.81535 -10.57136 -10.44272 -10.35442 -10.32444 -10.13418 -9.96581 -9.74197 -9.69510 -9.67455 -8.99950 -8.88716 -8.88111 -6.92659 -5.77373 -3.05746 -0.31166 0.18992 1.45555 2.17042 2.95598 3.07788 3.42449 3.48334 3.50373 3.65059 3.75009 3.95978 4.10428 4.28243 4.32833 4.45528 4.55957 4.70416 4.79689 4.82391 4.93877 5.06395 5.23901 5.28697 5.38605 5.44983 5.52089 5.53112 5.60563 5.63943 5.68331 5.77380 5.84028 5.91900 5.95400 6.03888 6.08911 6.21462 6.21801 6.27380 6.50969 6.53744 6.59348 6.75119 6.81635 7.17992 7.51571 7.56291 7.70167 8.10209 8.41555 9.53090 10.10407 10.45483 11.45556 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008110 B = 0.003590 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.734138 B = 7796.616295 C =10495.046130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.163 3.837 11 C -0.107 4.107 12 H 0.090 0.910 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.145 3.855 17 H 0.091 0.909 18 N -0.691 5.691 19 C 0.565 3.435 20 O -0.533 6.533 21 C 0.142 3.858 22 C -0.131 4.131 23 C -0.039 4.039 24 C -0.155 4.155 25 C 0.156 3.844 26 N -0.482 5.482 27 C 0.087 3.913 28 C -0.130 4.130 29 C 0.153 3.847 30 N -0.442 5.442 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.416 0.584 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.169 0.831 45 H 0.163 0.837 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.727 -18.352 -4.169 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.035 3.965 11 C -0.126 4.126 12 H 0.108 0.892 13 C -0.151 4.151 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.040 3.960 17 H 0.109 0.891 18 N -0.344 5.344 19 C 0.348 3.652 20 O -0.409 6.409 21 C -0.014 4.014 22 C -0.152 4.152 23 C -0.067 4.067 24 C -0.159 4.159 25 C -0.017 4.017 26 N -0.190 5.190 27 C -0.057 4.057 28 C -0.150 4.150 29 C 0.025 3.975 30 N -0.153 5.153 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.256 0.744 42 H 0.173 0.827 43 H 0.171 0.829 44 H 0.186 0.814 45 H 0.180 0.820 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.807 -17.947 -4.372 23.062 hybrid contribution 0.032 0.713 0.330 0.786 sum 13.838 -17.234 -4.042 22.469 Atomic orbital electron populations 1.69662 1.05076 1.25509 1.57892 1.24719 0.95500 0.97618 1.03053 0.86145 0.78804 0.84225 0.77201 1.20603 1.21854 1.21873 1.19263 0.91022 0.84157 1.42473 0.91242 1.42330 1.05844 0.99796 1.89336 1.20585 0.92986 0.85359 0.97531 1.22488 0.98061 0.93094 0.98960 0.89205 1.22519 1.00562 0.95300 0.96691 1.22389 0.97698 0.95879 1.00306 1.22570 0.97474 0.97936 0.98954 1.21747 0.79464 0.95875 0.98898 0.89069 1.46196 1.08209 1.32618 1.47363 1.17900 0.83788 0.82370 0.81133 1.90773 1.81443 1.33596 1.35108 1.21643 0.95239 0.91373 0.93108 1.21826 0.92597 1.00198 1.00534 1.21445 0.96785 0.95204 0.93258 1.19962 0.96710 0.98481 1.00744 1.23238 0.93640 0.93795 0.91074 1.67495 1.36754 1.03854 1.10900 1.22309 0.88426 0.97144 0.97803 1.21903 0.98603 0.97615 0.96868 1.18888 0.88300 0.94754 0.95533 1.67912 1.19631 1.18190 1.09597 0.93580 0.78197 0.96322 0.96485 0.91402 0.90701 0.91870 0.91548 0.91570 0.91266 0.74445 0.82671 0.82940 0.81440 0.81991 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.63 9.99 -15.05 -0.15 -6.78 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.13 5.49 -59.90 -0.33 -18.46 16 10 C 0.16 3.22 4.72 -4.04 -0.02 3.20 16 11 C -0.11 -1.69 2.85 -88.96 -0.25 -1.94 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 13 C -0.11 -1.66 6.19 -24.74 -0.15 -1.81 16 14 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 15 C -0.13 -1.60 6.59 -25.61 -0.17 -1.77 16 16 C 0.14 2.03 3.10 -66.81 -0.21 1.82 16 17 H 0.09 1.33 7.61 -51.93 -0.39 0.94 16 18 N -0.69 -9.79 4.36 -53.50 -0.23 -10.02 16 19 C 0.56 8.09 7.81 -12.09 -0.09 8.00 16 20 O -0.53 -8.53 15.96 5.37 0.09 -8.44 16 21 C 0.14 1.81 6.75 -82.88 -0.56 1.25 16 22 C -0.13 -1.30 9.54 -39.42 -0.38 -1.68 16 23 C -0.04 -0.30 9.92 -39.28 -0.39 -0.69 16 24 C -0.15 -1.49 5.75 -106.74 -0.61 -2.10 16 25 C 0.16 1.29 11.05 -16.99 -0.19 1.10 16 26 N -0.48 -4.81 10.30 -13.18 -0.14 -4.95 16 27 C 0.09 0.82 11.05 -17.99 -0.20 0.62 16 28 C -0.13 -1.37 10.08 -39.33 -0.40 -1.77 16 29 C 0.15 1.83 6.63 -84.86 -0.56 1.27 16 30 N -0.44 -5.85 9.50 -7.49 -0.07 -5.92 16 31 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.38 10.01 7.64 -40.82 -0.31 9.70 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.34 6.39 -51.93 -0.33 0.01 16 35 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.42 6.03 5.80 -40.82 -0.24 5.80 16 42 H 0.16 1.36 7.60 -52.49 -0.40 0.96 16 43 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.16 1.11 8.06 -52.48 -0.42 0.68 16 46 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -33.38 382.02 -10.10 -43.47 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.27 Total: 11.87 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -4.60 Total: -3.41 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -0.04 Total: -66.64 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.38 -10.10 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715567805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.960 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds