Wall clock time and date at job start Tue Mar 31 2020 23:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99437 * 2 1 4 4 H 1.48501 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47334 * 299.99814 * 3 2 1 6 6 H 1.48499 * 109.47449 * 60.00183 * 3 2 1 7 7 C 1.38813 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99948 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.65225 * 0.04130 * 9 7 2 11 11 C 1.54322 * 107.26923 * 181.02686 * 10 9 7 12 12 C 1.55153 * 102.94746 * 22.18845 * 11 10 9 13 13 H 1.09005 * 111.03240 * 82.58544 * 12 11 10 14 14 C 1.52997 * 111.00847 * 206.42573 * 12 11 10 15 15 C 1.53000 * 109.47060 * 178.65316 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.34779 * 119.99872 * 179.97438 * 16 15 14 18 18 O 1.21548 * 119.99987 * 359.97438 * 17 16 15 19 19 C 1.47870 * 120.00001 * 179.97438 * 17 16 15 20 20 C 1.40640 * 120.25868 * 359.72334 * 19 17 16 21 21 N 1.30849 * 121.65365 * 179.69371 * 20 19 17 22 22 C 1.33591 * 121.58576 * 0.59363 * 21 20 19 23 23 C 1.40637 * 121.62984 * 179.68435 * 22 21 20 24 24 N 1.31149 * 120.03989 * 179.97438 * 23 22 21 25 25 C 1.32489 * 122.89136 * 0.02562 * 24 23 22 26 26 C 1.36314 * 121.71522 * 359.97438 * 25 24 23 27 27 C 1.40600 * 118.64689 * 359.97438 * 26 25 24 28 28 C 1.38986 * 120.25993 * 179.97438 * 19 17 16 29 29 C 1.47422 * 125.64198 * 180.02562 * 9 7 2 30 30 H 0.96997 * 120.00584 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87972 * 300.44052 * 10 9 7 32 32 H 1.09002 * 109.88210 * 61.45152 * 10 9 7 33 33 H 1.09002 * 110.71590 * 263.82976 * 11 10 9 34 34 H 1.08994 * 110.71955 * 140.55764 * 11 10 9 35 35 H 1.09002 * 109.47153 * 58.64997 * 14 12 11 36 36 H 1.09001 * 109.46832 * 298.65188 * 14 12 11 37 37 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 38 38 H 1.08992 * 109.47399 * 59.99823 * 15 14 12 39 39 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 40 40 H 1.08005 * 119.17181 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.98056 * 0.02562 * 23 22 21 42 42 H 1.08007 * 119.14348 * 180.02562 * 25 24 23 43 43 H 1.07991 * 120.67721 * 180.02562 * 26 25 24 44 44 H 1.07997 * 121.11244 * 0.02743 * 28 19 17 45 45 H 1.08999 * 110.36968 * 37.06823 * 29 9 7 46 46 H 1.09000 * 110.46132 * 274.78760 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 -0.0009 11 6 -0.4482 -4.0442 0.0261 12 6 0.8516 -4.6560 0.6121 13 1 0.8559 -4.5963 1.7005 14 6 1.0372 -6.1008 0.1443 15 6 2.3434 -6.6576 0.7142 16 7 2.5214 -8.0408 0.2656 17 6 3.6103 -8.7379 0.6464 18 8 4.4448 -8.2187 1.3614 19 6 3.7897 -10.1342 0.1941 20 6 2.8246 -10.7422 -0.6286 21 7 2.9586 -11.9740 -1.0494 22 6 4.0138 -12.7190 -0.7084 23 6 4.1555 -14.0450 -1.1548 24 7 5.2046 -14.7482 -0.8013 25 6 6.1650 -14.2672 -0.0257 26 6 6.1237 -12.9943 0.4602 27 6 5.0289 -12.1792 0.1227 28 6 4.9108 -10.8578 0.5830 29 6 1.9337 -3.7310 0.0016 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5583 -2.0520 0.8822 32 1 -0.5536 -2.0824 -0.9020 33 1 -0.6304 -4.4184 -0.9813 34 1 -1.2988 -4.2514 0.6753 35 1 1.0751 -6.1280 -0.9447 36 1 0.2009 -6.7062 0.4940 37 1 3.1796 -6.0522 0.3644 38 1 2.3055 -6.6303 1.8031 39 1 1.8555 -8.4551 -0.3054 40 1 1.9531 -10.1768 -0.9242 41 1 3.4004 -14.4844 -1.7898 42 1 7.0030 -14.8999 0.2275 43 1 6.9161 -12.6193 1.0909 44 1 5.6659 -10.4185 1.2179 45 1 2.8325 -3.7401 0.6182 46 1 2.1693 -4.0434 -1.0157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753331302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:48 Heat of formation + Delta-G solvation = 51.169394 kcal Electronic energy + Delta-G solvation = -27423.173971 eV Core-core repulsion = 23506.199160 eV Total energy + Delta-G solvation = -3916.974811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80235 -40.05088 -38.32814 -37.80541 -35.47694 -34.25532 -33.22180 -32.24930 -30.95855 -30.76060 -29.03213 -27.01299 -25.69727 -25.08453 -24.51867 -23.14851 -22.44928 -21.55676 -20.00810 -19.72157 -19.00427 -18.45709 -17.97078 -16.88456 -16.77766 -15.93040 -15.92994 -15.57027 -15.37539 -14.92412 -14.77750 -14.60210 -14.34881 -13.89367 -13.78343 -13.73813 -13.58933 -13.15210 -12.97542 -12.50108 -12.31883 -12.01385 -11.85457 -11.59870 -11.38905 -11.13883 -10.87845 -10.79280 -10.70713 -10.38447 -10.13202 -10.01771 -9.95722 -9.91326 -9.84779 -9.77442 -9.62296 -9.29767 -9.04594 -8.58725 -6.80660 -5.69690 -3.02784 -0.50181 -0.09605 1.18146 2.03805 2.73965 2.84900 3.40631 3.46350 3.46757 3.48703 3.50060 3.79088 3.88685 4.04667 4.07911 4.14101 4.44441 4.51432 4.62962 4.80798 4.91154 4.96321 5.04110 5.12978 5.23113 5.30432 5.45386 5.47848 5.57919 5.62704 5.70604 5.71556 5.81862 5.93554 5.97462 6.04106 6.16436 6.23567 6.36995 6.54593 6.58171 6.72362 6.96077 7.04859 7.14019 7.35305 7.58768 7.64802 7.82525 7.84879 8.28354 9.24448 9.84955 10.51057 11.42148 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028838 B = 0.001660 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.712541 B =16865.974257 C =17485.284675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.116 3.884 16 N -0.719 5.719 17 C 0.559 3.441 18 O -0.528 6.528 19 C -0.171 4.171 20 C 0.160 3.840 21 N -0.455 5.455 22 C 0.081 3.919 23 C 0.163 3.837 24 N -0.468 5.468 25 C 0.073 3.927 26 C -0.132 4.132 27 C -0.086 4.086 28 C 0.008 3.992 29 C 0.139 3.861 30 H 0.251 0.749 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.168 0.832 41 H 0.176 0.824 42 H 0.162 0.838 43 H 0.147 0.853 44 H 0.160 0.840 45 H 0.037 0.963 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 -29.088 -0.277 29.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.371 5.371 17 C 0.344 3.656 18 O -0.405 6.405 19 C -0.178 4.178 20 C -0.014 4.014 21 N -0.163 5.163 22 C -0.042 4.042 23 C -0.010 4.010 24 N -0.177 5.177 25 C -0.069 4.069 26 C -0.153 4.153 27 C -0.093 4.093 28 C -0.018 4.018 29 C 0.013 3.987 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.185 0.815 41 H 0.193 0.807 42 H 0.179 0.821 43 H 0.164 0.836 44 H 0.177 0.823 45 H 0.055 0.945 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 6.446 -29.802 -0.527 30.495 hybrid contribution 0.609 2.070 0.551 2.227 sum 7.054 -27.732 0.024 28.615 Atomic orbital electron populations 1.69977 1.04867 1.24836 1.57379 1.24804 0.95731 0.97670 1.02414 0.86050 0.78744 0.83818 0.77212 1.20509 1.21796 1.21774 1.19124 0.90484 0.82490 1.43388 0.90421 1.44492 1.01748 0.99950 1.87113 1.21143 0.84359 0.88380 1.00990 1.22897 0.95899 0.99484 0.99358 1.22268 0.97750 0.91826 1.00217 0.90545 1.21761 0.95619 0.96979 1.01177 1.21600 0.99198 0.79822 0.99988 1.46001 1.23458 1.15229 1.52370 1.17929 0.82084 0.84875 0.80682 1.90826 1.42591 1.70278 1.36823 1.21165 0.97863 0.96189 1.02557 1.23181 0.96911 0.90678 0.90673 1.67887 1.21097 1.06146 1.21216 1.20070 0.91303 0.96436 0.96401 1.23183 0.94685 0.87951 0.95178 1.67474 1.01429 1.37580 1.11187 1.22345 0.97042 0.93773 0.93740 1.22026 0.97727 0.94967 1.00571 1.18962 0.96479 0.95108 0.98780 1.21963 0.95685 0.90999 0.93186 1.21606 0.94305 0.86161 0.96616 0.93868 0.93704 0.94056 0.92539 0.92315 0.91146 0.91498 0.90466 0.90987 0.76539 0.81521 0.80733 0.82102 0.83569 0.82275 0.94468 0.96531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 10.31 55.49 0.57 -26.71 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -15.50 3.39 -170.08 -0.58 -16.08 16 10 C 0.18 4.23 5.38 -3.06 -0.02 4.22 16 11 C -0.14 -2.42 6.42 -24.90 -0.16 -2.58 16 12 C -0.10 -1.60 3.07 -88.48 -0.27 -1.87 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.12 -1.31 4.84 -26.73 -0.13 -1.44 16 15 C 0.12 1.32 5.52 -4.04 -0.02 1.30 16 16 N -0.72 -6.54 5.51 -61.25 -0.34 -6.88 16 17 C 0.56 6.07 7.78 -12.32 -0.10 5.97 16 18 O -0.53 -7.75 16.39 5.32 0.09 -7.67 16 19 C -0.17 -1.50 5.89 -104.77 -0.62 -2.12 16 20 C 0.16 1.19 10.68 -17.06 -0.18 1.01 16 21 N -0.46 -3.98 10.33 -10.65 -0.11 -4.08 16 22 C 0.08 0.71 6.62 -84.81 -0.56 0.15 16 23 C 0.16 1.27 11.25 -16.94 -0.19 1.08 16 24 N -0.47 -3.82 10.28 -13.11 -0.13 -3.95 16 25 C 0.07 0.47 11.08 -17.96 -0.20 0.27 16 26 C -0.13 -0.81 9.88 -39.38 -0.39 -1.20 16 27 C -0.09 -0.70 5.75 -106.79 -0.61 -1.31 16 28 C 0.01 0.07 9.51 -38.48 -0.37 -0.30 16 29 C 0.14 2.79 5.89 -2.54 -0.01 2.78 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 32 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 33 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.02 7.46 -51.93 -0.39 0.63 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 2.36 6.50 -40.82 -0.27 2.10 16 40 H 0.17 0.72 6.37 -52.48 -0.33 0.38 16 41 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.16 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.16 1.19 7.71 -52.49 -0.40 0.79 16 45 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 46 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -35.03 380.41 -10.21 -45.24 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.34 Total: -1.91 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -4.08 Total: -0.98 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.59 Total: -57.70 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.03 -10.21 -45.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753331302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.414 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds