Wall clock time and date at job start Tue Mar 31 2020 23:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99437 * 2 1 4 4 H 1.48501 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47334 * 299.99814 * 3 2 1 6 6 H 1.48499 * 109.47449 * 60.00183 * 3 2 1 7 7 C 1.38813 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99948 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.65225 * 0.04130 * 9 7 2 11 11 C 1.54322 * 107.26923 * 181.02686 * 10 9 7 12 12 C 1.55153 * 102.94746 * 22.18845 * 11 10 9 13 13 H 1.09005 * 111.03240 * 82.58544 * 12 11 10 14 14 C 1.52997 * 111.00847 * 206.42573 * 12 11 10 15 15 C 1.53000 * 109.47060 * 178.65316 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.34779 * 119.99872 * 179.97438 * 16 15 14 18 18 O 1.21548 * 119.99987 * 359.97438 * 17 16 15 19 19 C 1.47870 * 120.00001 * 179.97438 * 17 16 15 20 20 C 1.40640 * 120.25868 * 359.72334 * 19 17 16 21 21 N 1.30849 * 121.65365 * 179.69371 * 20 19 17 22 22 C 1.33591 * 121.58576 * 0.59363 * 21 20 19 23 23 C 1.40637 * 121.62984 * 179.68435 * 22 21 20 24 24 N 1.31149 * 120.03989 * 179.97438 * 23 22 21 25 25 C 1.32489 * 122.89136 * 0.02562 * 24 23 22 26 26 C 1.36314 * 121.71522 * 359.97438 * 25 24 23 27 27 C 1.40600 * 118.64689 * 359.97438 * 26 25 24 28 28 C 1.38986 * 120.25993 * 179.97438 * 19 17 16 29 29 C 1.47422 * 125.64198 * 180.02562 * 9 7 2 30 30 H 0.96997 * 120.00584 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87972 * 300.44052 * 10 9 7 32 32 H 1.09002 * 109.88210 * 61.45152 * 10 9 7 33 33 H 1.09002 * 110.71590 * 263.82976 * 11 10 9 34 34 H 1.08994 * 110.71955 * 140.55764 * 11 10 9 35 35 H 1.09002 * 109.47153 * 58.64997 * 14 12 11 36 36 H 1.09001 * 109.46832 * 298.65188 * 14 12 11 37 37 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 38 38 H 1.08992 * 109.47399 * 59.99823 * 15 14 12 39 39 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 40 40 H 1.08005 * 119.17181 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.98056 * 0.02562 * 23 22 21 42 42 H 1.08007 * 119.14348 * 180.02562 * 25 24 23 43 43 H 1.07991 * 120.67721 * 180.02562 * 26 25 24 44 44 H 1.07997 * 121.11244 * 0.02743 * 28 19 17 45 45 H 1.08999 * 110.36968 * 37.06823 * 29 9 7 46 46 H 1.09000 * 110.46132 * 274.78760 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 -0.0009 11 6 -0.4482 -4.0442 0.0261 12 6 0.8516 -4.6560 0.6121 13 1 0.8559 -4.5963 1.7005 14 6 1.0372 -6.1008 0.1443 15 6 2.3434 -6.6576 0.7142 16 7 2.5214 -8.0408 0.2656 17 6 3.6103 -8.7379 0.6464 18 8 4.4448 -8.2187 1.3614 19 6 3.7897 -10.1342 0.1941 20 6 2.8246 -10.7422 -0.6286 21 7 2.9586 -11.9740 -1.0494 22 6 4.0138 -12.7190 -0.7084 23 6 4.1555 -14.0450 -1.1548 24 7 5.2046 -14.7482 -0.8013 25 6 6.1650 -14.2672 -0.0257 26 6 6.1237 -12.9943 0.4602 27 6 5.0289 -12.1792 0.1227 28 6 4.9108 -10.8578 0.5830 29 6 1.9337 -3.7310 0.0016 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5583 -2.0520 0.8822 32 1 -0.5536 -2.0824 -0.9020 33 1 -0.6304 -4.4184 -0.9813 34 1 -1.2988 -4.2514 0.6753 35 1 1.0751 -6.1280 -0.9447 36 1 0.2009 -6.7062 0.4940 37 1 3.1796 -6.0522 0.3644 38 1 2.3055 -6.6303 1.8031 39 1 1.8555 -8.4551 -0.3054 40 1 1.9531 -10.1768 -0.9242 41 1 3.4004 -14.4844 -1.7898 42 1 7.0030 -14.8999 0.2275 43 1 6.9161 -12.6193 1.0909 44 1 5.6659 -10.4185 1.2179 45 1 2.8325 -3.7401 0.6182 46 1 2.1693 -4.0434 -1.0157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753331302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:47 Heat of formation + Delta-G solvation = 27.303813 kcal Electronic energy + Delta-G solvation = -27424.208860 eV Core-core repulsion = 23506.199160 eV Total energy + Delta-G solvation = -3918.009700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37897 -40.85074 -39.42627 -38.83656 -36.57428 -34.86628 -34.78892 -33.17881 -32.16620 -31.48224 -30.66951 -28.33803 -26.93593 -25.96560 -25.61278 -23.79215 -23.55180 -22.38236 -21.79737 -20.96849 -19.71215 -19.10963 -18.87801 -18.53153 -17.41121 -16.98466 -16.82027 -16.62381 -16.32137 -16.12842 -15.82420 -15.57363 -15.26994 -15.10684 -14.99894 -14.33842 -14.29631 -14.11067 -13.85568 -13.74991 -13.63546 -13.48202 -13.29577 -13.06044 -12.81626 -12.65988 -12.21929 -11.97530 -11.96877 -11.79255 -11.68915 -11.37885 -11.30945 -11.28462 -10.97863 -10.70951 -10.56610 -10.53075 -10.12992 -9.57138 -8.87489 -7.85269 -5.20046 -1.08868 -0.65217 0.61027 1.39526 1.44299 1.45095 1.55592 1.95293 2.16050 2.49074 2.93042 2.94376 3.25812 3.32594 3.36304 3.46230 3.55541 3.58142 3.69526 3.80693 3.87909 4.01968 4.15568 4.18233 4.31599 4.39262 4.40575 4.48212 4.63352 4.64579 4.73353 4.78942 4.80513 4.91556 4.94411 5.02657 5.15065 5.16648 5.19138 5.29190 5.36140 5.45438 5.46025 5.56226 5.73109 5.81512 6.22008 6.40112 6.50239 6.82940 7.06509 7.11922 7.80363 8.44097 9.25132 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028838 B = 0.001660 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.712541 B =16865.974257 C =17485.284675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.631 5.631 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.085 4.085 13 H 0.073 0.927 14 C -0.101 4.101 15 C 0.122 3.878 16 N -0.703 5.703 17 C 0.561 3.439 18 O -0.573 6.573 19 C -0.180 4.180 20 C 0.165 3.835 21 N -0.468 5.468 22 C 0.066 3.934 23 C 0.153 3.847 24 N -0.484 5.484 25 C 0.067 3.933 26 C -0.128 4.128 27 C -0.100 4.100 28 C 0.008 3.992 29 C 0.132 3.868 30 H 0.246 0.754 31 H 0.006 0.994 32 H 0.003 0.997 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.418 0.582 40 H 0.199 0.801 41 H 0.189 0.811 42 H 0.189 0.811 43 H 0.173 0.827 44 H 0.163 0.837 45 H 0.033 0.967 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.568 -31.333 -0.539 32.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.358 5.358 10 C 0.054 3.946 11 C -0.160 4.160 12 C -0.105 4.105 13 H 0.091 0.909 14 C -0.139 4.139 15 C -0.002 4.002 16 N -0.356 5.356 17 C 0.348 3.652 18 O -0.454 6.454 19 C -0.186 4.186 20 C -0.010 4.010 21 N -0.177 5.177 22 C -0.057 4.057 23 C -0.019 4.019 24 N -0.193 5.193 25 C -0.075 4.075 26 C -0.148 4.148 27 C -0.107 4.107 28 C -0.019 4.019 29 C 0.007 3.993 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.021 0.979 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.256 0.744 40 H 0.215 0.785 41 H 0.206 0.794 42 H 0.206 0.794 43 H 0.190 0.810 44 H 0.181 0.819 45 H 0.051 0.949 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.749 -32.105 -0.817 32.817 hybrid contribution 0.582 2.718 0.637 2.851 sum 7.331 -29.387 -0.180 30.289 Atomic orbital electron populations 1.70202 1.06224 1.25094 1.58543 1.25652 0.96665 1.01008 1.02848 0.85026 0.78139 0.79530 0.76765 1.19141 1.21819 1.21851 1.19506 0.90947 0.84062 1.42603 0.90309 1.44851 1.02711 1.01288 1.86923 1.20960 0.83578 0.92706 0.97339 1.22759 0.97468 0.94364 1.01420 1.22151 0.94761 0.93834 0.99764 0.90882 1.21616 0.96557 0.93804 1.01916 1.21377 0.98560 0.80655 0.99572 1.45779 1.23467 1.14268 1.52049 1.18188 0.81669 0.85472 0.79872 1.90806 1.44214 1.71355 1.38989 1.21037 0.98790 0.95129 1.03686 1.23595 0.97282 0.90415 0.89672 1.67930 1.21344 1.06612 1.21789 1.20298 0.91651 0.96935 0.96774 1.23427 0.95122 0.87824 0.95544 1.67509 1.01933 1.38116 1.11739 1.22832 0.97316 0.94296 0.93092 1.22333 0.97629 0.94635 1.00246 1.19142 0.97207 0.95230 0.99090 1.22108 0.95706 0.91182 0.92875 1.21844 0.95447 0.84695 0.97267 0.94471 0.97571 0.97880 0.90440 0.89948 0.89806 0.88124 0.92651 0.91724 0.74357 0.78488 0.79376 0.79437 0.81000 0.81929 0.94901 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.27 10.31 21.65 0.22 -58.04 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.24 -13.92 10.28 84.03 0.86 -13.05 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -32.82 3.39 -692.02 -2.35 -35.17 16 10 C 0.18 8.82 5.38 86.73 0.47 9.29 16 11 C -0.12 -4.04 6.42 31.78 0.20 -3.83 16 12 C -0.09 -2.52 3.07 -9.41 -0.03 -2.55 16 13 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 14 C -0.10 -1.87 4.84 30.59 0.15 -1.73 16 15 C 0.12 2.49 5.52 86.38 0.48 2.96 16 16 N -0.70 -10.95 5.51 -465.96 -2.57 -13.52 16 17 C 0.56 11.40 7.78 86.79 0.68 12.08 16 18 O -0.57 -16.66 16.39 -3.87 -0.06 -16.72 16 19 C -0.18 -2.88 5.89 -19.96 -0.12 -3.00 16 20 C 0.17 2.09 10.68 85.43 0.91 3.01 16 21 N -0.47 -7.42 10.33 -187.60 -1.94 -9.36 16 22 C 0.07 1.08 6.62 40.36 0.27 1.35 16 23 C 0.15 2.23 11.25 85.38 0.96 3.19 16 24 N -0.48 -7.28 10.28 -195.39 -2.01 -9.29 16 25 C 0.07 0.73 11.08 84.14 0.93 1.66 16 26 C -0.13 -1.35 9.88 22.40 0.22 -1.12 16 27 C -0.10 -1.49 5.75 -21.27 -0.12 -1.61 16 28 C 0.01 0.13 9.51 22.98 0.22 0.34 16 29 C 0.13 5.22 5.89 86.85 0.51 5.73 16 30 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 31 H 0.01 0.34 7.38 -2.39 -0.02 0.32 16 32 H 0.00 0.16 7.50 -2.39 -0.02 0.15 16 33 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.40 7.46 -2.39 -0.02 1.38 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.42 3.32 6.50 -92.70 -0.60 2.72 16 40 H 0.20 1.00 6.37 -2.91 -0.02 0.98 16 41 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.17 0.79 8.06 -2.92 -0.02 0.77 16 44 H 0.16 2.33 7.71 -2.91 -0.02 2.31 16 45 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 46 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 Total: -1.00 -79.88 380.41 0.79 -79.10 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 0.41 Total: 5.07 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 7.06 Total: 9.16 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -8.64 Total: -125.38 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.06 Total: -16.72 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -79.88 0.79 -79.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753331302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.401 kcal (2) G-P(sol) polarization free energy of solvation -79.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds