Wall clock time and date at job start Tue Mar 31 2020 22:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00057 * 2 1 4 4 H 1.48503 * 109.47130 * 240.00580 * 3 2 1 5 5 H 1.48499 * 109.47119 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46920 * 120.00500 * 3 2 1 7 7 C 1.38813 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99475 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99761 * 185.15303 * 9 7 2 11 11 C 1.53000 * 110.02035 * 55.45116 * 10 9 7 12 12 N 1.46500 * 109.46868 * 58.75010 * 11 10 9 13 13 C 1.34779 * 120.00077 * 184.89798 * 12 11 10 14 14 O 1.21528 * 119.99893 * 359.97438 * 13 12 11 15 15 C 1.48007 * 119.99817 * 180.02562 * 13 12 11 16 16 C 1.38885 * 121.17134 * 354.42604 * 15 13 12 17 17 C 1.39349 * 119.67345 * 180.02562 * 16 15 13 18 18 N 1.31100 * 121.90081 * 359.97133 * 17 16 15 19 19 C 1.33292 * 121.61782 * 0.02833 * 18 17 16 20 20 C 1.40832 * 121.90959 * 179.97438 * 19 18 17 21 21 C 1.36171 * 118.76577 * 180.02562 * 20 19 18 22 22 N 1.32539 * 121.96065 * 359.77879 * 21 20 19 23 23 C 1.31344 * 122.60263 * 0.47478 * 22 21 20 24 24 C 1.40084 * 119.87220 * 359.51588 * 23 22 21 25 25 C 1.54265 * 110.07047 * 176.87223 * 10 9 7 26 26 C 1.54890 * 104.19859 * 95.69571 * 25 10 9 27 27 C 1.54890 * 102.74600 * 37.94189 * 26 25 10 28 28 C 1.53872 * 110.03163 * 294.06144 * 10 9 7 29 29 H 0.97006 * 119.99526 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00299 * 5.14708 * 9 7 2 31 31 H 1.08998 * 109.47267 * 298.75381 * 11 10 9 32 32 H 1.08996 * 109.47126 * 178.74925 * 11 10 9 33 33 H 0.97003 * 119.99885 * 4.90028 * 12 11 10 34 34 H 1.08003 * 120.16449 * 0.04034 * 16 15 13 35 35 H 1.07993 * 119.05054 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.61936 * 359.97438 * 20 19 18 37 37 H 1.08005 * 119.01739 * 179.97438 * 21 20 19 38 38 H 1.07990 * 120.06100 * 179.78667 * 23 22 21 39 39 H 1.09005 * 110.48508 * 214.37390 * 25 10 9 40 40 H 1.09001 * 110.48686 * 337.01401 * 25 10 9 41 41 H 1.09001 * 110.75490 * 279.63014 * 26 25 10 42 42 H 1.08993 * 110.75798 * 156.25094 * 26 25 10 43 43 H 1.09005 * 110.48778 * 203.38208 * 27 26 25 44 44 H 1.08997 * 110.48770 * 80.73889 * 27 26 25 45 45 H 1.09005 * 110.03389 * 359.95193 * 28 10 9 46 46 H 1.08995 * 110.03677 * 121.38400 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0536 -3.6542 0.1129 11 6 2.9269 -3.6456 1.3691 12 7 2.0832 -3.4396 2.5489 13 6 2.6476 -3.2971 3.7645 14 8 3.8564 -3.3400 3.8819 15 6 1.7951 -3.0895 4.9565 16 6 0.4214 -2.9231 4.8376 17 6 -0.3515 -2.7292 5.9808 18 7 0.1795 -2.6986 7.1791 19 6 1.4903 -2.8513 7.3667 20 6 2.0673 -2.8189 8.6510 21 6 3.4141 -2.9815 8.7686 22 7 4.1925 -3.1726 7.7130 23 6 3.7249 -3.2096 6.4862 24 6 2.3516 -3.0532 6.2580 25 6 1.0601 -4.8331 0.1679 26 6 0.9744 -5.3265 -1.2978 27 6 2.4340 -5.1780 -1.7943 28 6 2.9271 -3.8735 -1.1348 29 1 -0.4850 0.8401 0.0004 30 1 0.3584 -2.3897 -0.0755 31 1 3.6565 -2.8389 1.2989 32 1 3.4471 -4.5994 1.4565 33 1 1.1183 -3.4058 2.4552 34 1 -0.0456 -2.9442 3.8640 35 1 -1.4188 -2.6014 5.8768 36 1 1.4531 -2.6672 9.5262 37 1 3.8609 -2.9569 9.7516 38 1 4.3972 -3.3646 5.6555 39 1 1.4414 -5.6234 0.8148 40 1 0.0839 -4.4934 0.5139 41 1 0.3025 -4.6951 -1.8792 42 1 0.6573 -6.3686 -1.3367 43 1 2.4605 -5.0900 -2.8805 44 1 3.0371 -6.0239 -1.4644 45 1 2.8087 -3.0382 -1.8250 46 1 3.9732 -3.9737 -0.8453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753666785.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:28 Heat of formation + Delta-G solvation = 41.866026 kcal Electronic energy + Delta-G solvation = -29595.823114 eV Core-core repulsion = 25678.444879 eV Total energy + Delta-G solvation = -3917.378235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41675 -39.54683 -38.30214 -38.00431 -34.40656 -33.67145 -33.40015 -31.62489 -30.96656 -30.33192 -28.41574 -27.99313 -25.73753 -24.53115 -24.22519 -23.43682 -22.75806 -20.91417 -20.19392 -18.92568 -18.49607 -17.94573 -17.40419 -17.05255 -16.10829 -15.90749 -15.42623 -15.20276 -14.95594 -14.78043 -14.45518 -14.40658 -14.31111 -14.05608 -13.42118 -13.28455 -13.21103 -12.96683 -12.84480 -12.70824 -12.15261 -12.07614 -11.61979 -11.12130 -10.86035 -10.79619 -10.69738 -10.67137 -10.62348 -10.47315 -10.36969 -10.17221 -9.93565 -9.80497 -9.73016 -9.44830 -9.27611 -9.00659 -8.78774 -8.53198 -7.11482 -5.89480 -3.19038 -0.12923 0.57066 1.48533 2.75171 3.17910 3.27659 3.37595 3.42514 3.44800 3.98316 4.01618 4.32804 4.45912 4.48500 4.54403 4.60569 4.62499 4.97741 5.02915 5.07527 5.12680 5.21740 5.36615 5.45939 5.46588 5.57384 5.64124 5.66947 5.78935 5.82570 5.84710 5.86694 5.99168 6.02627 6.13381 6.19616 6.26191 6.32572 6.43864 6.49280 6.55872 6.62076 6.71024 6.80700 6.99391 7.58028 7.63039 7.71473 7.87358 8.28861 8.33919 9.41471 9.93690 10.29336 11.32179 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.003706 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.943338 B = 7554.360653 C = 8629.507658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.005 4.005 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.189 3.811 11 C 0.118 3.882 12 N -0.681 5.681 13 C 0.553 3.447 14 O -0.538 6.538 15 C -0.038 4.038 16 C -0.140 4.140 17 C 0.152 3.848 18 N -0.468 5.468 19 C 0.152 3.848 20 C -0.152 4.152 21 C 0.090 3.910 22 N -0.492 5.492 23 C 0.163 3.837 24 C -0.134 4.134 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.132 4.132 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.403 0.597 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.201 0.799 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -11.040 8.580 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.008 4.008 12 N -0.330 5.330 13 C 0.339 3.661 14 O -0.418 6.418 15 C -0.052 4.052 16 C -0.161 4.161 17 C -0.021 4.021 18 N -0.177 5.177 19 C 0.026 3.974 20 C -0.173 4.173 21 C -0.054 4.054 22 N -0.200 5.200 23 C -0.008 4.008 24 C -0.139 4.139 25 C -0.165 4.165 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.172 4.172 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.169 0.831 35 H 0.189 0.811 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.217 0.783 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.862 -10.874 9.743 14.626 hybrid contribution -0.858 1.254 -0.963 1.799 sum 0.004 -9.620 8.780 13.024 Atomic orbital electron populations 1.69629 1.04983 1.25832 1.57369 1.24664 0.95402 0.97471 1.02614 0.86391 0.78721 0.83862 0.77991 1.21189 1.21721 1.21303 1.19032 0.90984 0.83776 1.42967 0.91298 1.42523 1.05987 0.99352 1.87498 1.20469 0.91188 0.87379 0.91349 1.22061 0.93857 1.00419 0.84427 1.45645 1.11364 1.69937 1.06020 1.17943 0.87323 0.77801 0.83044 1.90561 1.14049 1.51970 1.85209 1.20467 0.94094 0.97370 0.93236 1.22618 0.93321 0.98604 1.01567 1.23148 1.01005 0.91210 0.86749 1.67861 1.11638 1.12613 1.25576 1.18912 0.89234 0.95964 0.93340 1.21670 0.96301 1.03225 0.96091 1.22376 0.90218 0.94724 0.98104 1.67753 1.40065 1.12903 0.99320 1.24511 0.92527 0.88508 0.95239 1.19679 0.97051 1.03958 0.93223 1.22624 0.99525 0.97340 0.96966 1.22410 0.97136 0.99868 0.96251 1.22312 0.96110 0.97795 0.99648 1.22723 0.98571 0.97552 0.98401 0.93464 0.78083 0.90718 0.92456 0.76029 0.83053 0.81128 0.83737 0.82497 0.78297 0.91671 0.91449 0.91277 0.92500 0.92396 0.92505 0.90084 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.52 13.06 55.49 0.72 -24.80 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -5.80 8.61 -15.06 -0.13 -5.93 16 8 H 0.07 1.71 7.20 -52.49 -0.38 1.34 16 9 N -0.71 -14.82 4.79 -46.20 -0.22 -15.04 16 10 C 0.19 3.09 0.68 -130.70 -0.09 3.00 16 11 C 0.12 1.95 3.97 -4.04 -0.02 1.94 16 12 N -0.68 -10.71 5.18 -61.20 -0.32 -11.03 16 13 C 0.55 9.16 7.76 -12.25 -0.10 9.07 16 14 O -0.54 -10.02 13.60 5.34 0.07 -9.95 16 15 C -0.04 -0.57 5.93 -104.37 -0.62 -1.19 16 16 C -0.14 -1.74 9.60 -38.93 -0.37 -2.11 16 17 C 0.15 1.76 11.14 -17.45 -0.19 1.56 16 18 N -0.47 -6.35 10.33 -10.95 -0.11 -6.46 16 19 C 0.15 2.18 6.63 -84.88 -0.56 1.61 16 20 C -0.15 -1.85 10.08 -39.34 -0.40 -2.25 16 21 C 0.09 1.08 11.06 -17.99 -0.20 0.88 16 22 N -0.49 -7.25 10.31 -13.24 -0.14 -7.39 16 23 C 0.16 2.55 10.52 -17.07 -0.18 2.37 16 24 C -0.13 -2.06 5.77 -106.55 -0.61 -2.67 16 25 C -0.13 -1.71 5.38 -25.07 -0.13 -1.84 16 26 C -0.12 -1.53 6.91 -24.74 -0.17 -1.70 16 27 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 28 C -0.13 -2.09 5.99 -25.61 -0.15 -2.25 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.38 8.59 7.48 -40.82 -0.31 8.29 16 31 H 0.07 1.45 7.22 -51.93 -0.38 1.08 16 32 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 33 H 0.40 5.87 6.15 -40.82 -0.25 5.62 16 34 H 0.15 1.63 6.55 -52.48 -0.34 1.28 16 35 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.20 3.27 5.08 -52.49 -0.27 3.00 16 39 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 40 H 0.07 0.91 7.76 -51.93 -0.40 0.50 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 46 H 0.05 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -29.84 374.22 -9.61 -39.45 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -6.04 Total: 14.48 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -4.20 Total: -1.48 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.06 Total: -64.71 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.84 -9.61 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666785.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.313 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds