Wall clock time and date at job start Tue Mar 31 2020 23:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00007 * 2 1 4 4 H 1.48507 * 109.46679 * 239.99986 * 3 2 1 5 5 H 1.48501 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47004 * 120.00119 * 3 2 1 7 7 C 1.38811 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00312 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00377 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47658 * 179.97438 * 10 9 7 12 12 C 1.53775 * 113.61722 * 175.00034 * 11 10 9 13 13 C 1.53782 * 87.08054 * 139.98172 * 12 11 10 14 14 N 1.46498 * 113.61462 * 89.11857 * 13 12 11 15 15 C 1.34782 * 120.00067 * 156.53138 * 14 13 12 16 16 O 1.21577 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.47668 * 119.99860 * 180.02562 * 15 14 13 18 18 C 1.39710 * 120.07201 * 179.97438 * 17 15 14 19 19 C 1.37727 * 119.91595 * 179.97438 * 18 17 15 20 20 C 1.39053 * 120.07826 * 0.02562 * 19 18 17 21 21 N 1.39838 * 119.91995 * 179.97438 * 20 19 18 22 22 C 1.35842 * 126.10004 * 179.97438 * 21 20 19 23 23 C 1.35285 * 107.61013 * 179.97438 * 22 21 20 24 24 C 1.39955 * 107.97129 * 359.97438 * 23 22 21 25 25 N 1.30823 * 108.36870 * 0.02562 * 24 23 22 26 26 C 1.39060 * 120.15768 * 0.25352 * 20 19 18 27 27 C 1.37716 * 120.07544 * 359.48784 * 26 20 19 28 28 C 1.53780 * 87.17526 * 334.52320 * 13 12 11 29 29 H 0.97002 * 119.99501 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99574 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46880 * 59.99856 * 10 9 7 32 32 H 1.09007 * 109.47039 * 300.00295 * 10 9 7 33 33 H 1.08998 * 112.84936 * 43.80217 * 11 10 9 34 34 H 1.08996 * 113.61525 * 25.43630 * 12 11 10 35 35 H 1.09005 * 113.61487 * 254.52453 * 12 11 10 36 36 H 1.09003 * 113.61513 * 219.93201 * 13 12 11 37 37 H 0.97000 * 120.00138 * 336.52538 * 14 13 12 38 38 H 1.07998 * 120.04200 * 359.95650 * 18 17 15 39 39 H 1.08001 * 119.95590 * 180.02562 * 19 18 17 40 40 H 1.07999 * 126.19296 * 0.02562 * 22 21 20 41 41 H 1.08001 * 126.01244 * 180.26409 * 23 22 21 42 42 H 1.07998 * 125.81259 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.95866 * 179.72897 * 26 20 19 44 44 H 1.08004 * 120.03571 * 180.23700 * 27 26 20 45 45 H 1.09002 * 113.61127 * 140.02135 * 28 13 12 46 46 H 1.08994 * 113.61473 * 270.92877 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.7303 -6.2001 -0.1216 13 6 0.7050 -6.6995 0.9101 14 7 -0.5386 -7.1905 0.3113 15 6 -1.3109 -8.0662 0.9846 16 8 -0.9753 -8.4490 2.0886 17 6 -2.5642 -8.5615 0.3807 18 6 -3.3656 -9.4696 1.0770 19 6 -4.5341 -9.9291 0.5110 20 6 -4.9162 -9.4905 -0.7521 21 7 -6.1030 -9.9596 -1.3239 22 6 -6.5943 -9.6164 -2.5430 23 6 -7.7564 -10.2863 -2.7192 24 6 -7.9848 -11.0626 -1.5773 25 7 -6.9969 -10.8680 -0.7421 26 6 -4.1179 -8.5911 -1.4504 27 6 -2.9509 -8.1234 -0.8883 28 6 0.6165 -5.2485 1.4117 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 2.6846 -3.7145 0.8906 32 1 2.6847 -3.7145 -0.8895 33 1 0.2374 -4.6705 -0.6938 34 1 2.7586 -6.2220 0.2390 35 1 1.6159 -6.6542 -1.1059 36 1 1.1235 -7.3899 1.6425 37 1 -0.8062 -6.8853 -0.5697 38 1 -3.0691 -9.8111 2.0577 39 1 -5.1544 -10.6308 1.0488 40 1 -6.1392 -8.9332 -3.2447 41 1 -8.3932 -10.2349 -3.5900 42 1 -8.8322 -11.7118 -1.4137 43 1 -4.4155 -8.2560 -2.4330 44 1 -2.3333 -7.4220 -1.4296 45 1 -0.3964 -4.9350 1.6642 46 1 1.3409 -5.0108 2.1905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755213208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:47 Heat of formation + Delta-G solvation = 87.911373 kcal Electronic energy + Delta-G solvation = -27324.950284 eV Core-core repulsion = 23409.568725 eV Total energy + Delta-G solvation = -3915.381559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50499 -41.51661 -40.14023 -38.99260 -36.33986 -34.90675 -34.27541 -32.85992 -32.28604 -31.12962 -30.30243 -28.43873 -26.61702 -25.77133 -24.94652 -24.19840 -23.04607 -22.59942 -21.55430 -21.35816 -20.32885 -19.48871 -19.04851 -18.71729 -17.25637 -16.73326 -16.36481 -16.30388 -16.25308 -16.10104 -15.82098 -15.53684 -15.46492 -15.08657 -14.88445 -14.72055 -14.48027 -14.40702 -13.79114 -13.72593 -13.62113 -13.57670 -13.35853 -13.09842 -12.88816 -12.66285 -12.34225 -12.22645 -11.91623 -11.75708 -11.72012 -11.42943 -11.34843 -11.16015 -11.10248 -10.83550 -10.25127 -10.20753 -10.07287 -9.15409 -8.96105 -7.93996 -5.21900 -0.62409 0.17822 0.89386 1.32442 1.47518 1.50508 1.56554 1.79499 1.84678 2.03847 2.57057 2.71957 3.36498 3.38823 3.56300 3.60302 3.64629 3.67532 3.83451 3.93083 3.95521 3.97009 4.10477 4.23852 4.35059 4.39621 4.57513 4.57711 4.72160 4.76845 4.83034 4.86849 4.88709 4.93890 4.97026 5.00962 5.05949 5.10141 5.15664 5.19507 5.28363 5.36662 5.46471 5.50328 5.66555 5.68319 6.09692 6.28891 6.47399 6.57686 7.12963 7.34921 8.13550 8.35569 9.29305 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.001868 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.458098 B =14984.162245 C =16381.268191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.110 4.110 12 C -0.114 4.114 13 C 0.125 3.875 14 N -0.693 5.693 15 C 0.561 3.439 16 O -0.579 6.579 17 C -0.160 4.160 18 C -0.040 4.040 19 C -0.141 4.141 20 C 0.179 3.821 21 N -0.345 5.345 22 C 0.047 3.953 23 C -0.260 4.260 24 C 0.056 3.944 25 N -0.335 5.335 26 C -0.142 4.142 27 C -0.045 4.045 28 C -0.144 4.144 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.019 0.981 32 H 0.023 0.977 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.414 0.586 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.213 0.787 41 H 0.183 0.817 42 H 0.217 0.783 43 H 0.171 0.829 44 H 0.166 0.834 45 H 0.050 0.950 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 -25.035 -8.711 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.033 3.967 11 C -0.129 4.129 12 C -0.153 4.153 13 C 0.019 3.981 14 N -0.344 5.344 15 C 0.350 3.650 16 O -0.460 6.460 17 C -0.164 4.164 18 C -0.060 4.060 19 C -0.161 4.161 20 C 0.085 3.915 21 N -0.121 5.121 22 C -0.093 4.093 23 C -0.288 4.288 24 C -0.131 4.131 25 N -0.153 5.153 26 C -0.163 4.163 27 C -0.064 4.064 28 C -0.183 4.183 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.252 0.748 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.230 0.770 41 H 0.201 0.799 42 H 0.234 0.766 43 H 0.188 0.812 44 H 0.183 0.817 45 H 0.069 0.931 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.595 -25.476 -6.804 28.806 hybrid contribution -0.602 1.481 -0.648 1.726 sum -12.197 -23.995 -7.452 27.929 Atomic orbital electron populations 1.69810 1.06559 1.26057 1.59610 1.25568 0.96429 1.01106 1.03870 0.85217 0.77202 0.79197 0.78187 1.20227 1.22206 1.20592 1.19634 0.91520 0.85583 1.41081 0.90742 1.42567 1.05589 1.01238 1.89305 1.20839 0.93826 0.84570 0.97509 1.22743 0.98582 0.94285 0.97279 1.23221 0.98857 0.93316 0.99883 1.21801 0.84903 0.94390 0.96960 1.45497 1.22741 1.44622 1.21550 1.18457 0.83749 0.78281 0.84540 1.90760 1.73713 1.60000 1.21506 1.19929 0.96391 1.02806 0.97288 1.21141 0.91927 0.93285 0.99613 1.20812 0.97822 1.02823 0.94650 1.18002 0.84363 0.95523 0.93574 1.46163 1.17110 1.34645 1.14198 1.23542 0.96442 1.01290 0.88048 1.22096 1.00094 1.03970 1.02592 1.24762 0.97475 0.98916 0.91990 1.77427 1.03348 1.10806 1.23742 1.21043 0.94795 0.98248 1.02203 1.21411 0.95437 0.96897 0.92667 1.23479 1.01275 0.96036 0.97539 0.94074 0.79526 0.96346 0.95886 0.89281 0.87509 0.88591 0.88721 0.74784 0.84476 0.84443 0.77027 0.79948 0.76623 0.81157 0.81654 0.93111 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -37.44 5.60 -343.46 -1.92 -39.37 16 10 C 0.16 6.04 6.10 86.38 0.53 6.57 16 11 C -0.11 -3.13 3.65 -10.18 -0.04 -3.17 16 12 C -0.11 -2.32 7.38 31.12 0.23 -2.09 16 13 C 0.12 2.91 4.30 45.52 0.20 3.11 16 14 N -0.69 -14.32 5.21 -443.06 -2.31 -16.63 16 15 C 0.56 14.01 7.77 86.73 0.67 14.68 16 16 O -0.58 -19.12 15.96 -3.96 -0.06 -19.18 16 17 C -0.16 -3.23 5.88 -20.08 -0.12 -3.35 16 18 C -0.04 -0.84 9.58 22.50 0.22 -0.63 16 19 C -0.14 -2.81 9.64 22.34 0.22 -2.59 16 20 C 0.18 3.17 6.69 38.26 0.26 3.43 16 21 N -0.34 -6.05 3.81 -187.27 -0.71 -6.77 16 22 C 0.05 0.52 10.82 83.39 0.90 1.42 16 23 C -0.26 -2.57 10.80 22.00 0.24 -2.33 16 24 C 0.06 0.72 12.02 85.26 1.02 1.75 16 25 N -0.33 -6.61 11.85 -56.98 -0.67 -7.28 16 26 C -0.14 -1.78 9.44 22.34 0.21 -1.57 16 27 C -0.04 -0.61 9.53 22.50 0.21 -0.40 16 28 C -0.14 -4.19 7.45 31.22 0.23 -3.96 16 29 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.37 19.96 7.67 -92.70 -0.71 19.24 16 31 H 0.02 0.72 7.85 -2.38 -0.02 0.70 16 32 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.11 2.01 8.10 -2.39 -0.02 1.99 16 35 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.09 2.39 7.50 -2.39 -0.02 2.38 16 37 H 0.41 6.13 6.73 -92.71 -0.62 5.50 16 38 H 0.14 3.01 7.64 -2.91 -0.02 2.99 16 39 H 0.14 2.80 7.68 -2.91 -0.02 2.78 16 40 H 0.21 0.68 7.04 -2.91 -0.02 0.66 16 41 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 42 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.17 0.92 6.73 -2.91 -0.02 0.90 16 44 H 0.17 1.28 6.39 -2.91 -0.02 1.26 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.08 2.55 7.90 -2.39 -0.02 2.53 16 Total: -1.00 -78.80 388.93 2.60 -76.20 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.31 Total: 30.02 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 6.29 Total: -6.08 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.34 Total: -129.10 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.06 Total: -19.18 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -78.80 2.60 -76.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755213208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.107 kcal (2) G-P(sol) polarization free energy of solvation -78.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds