Wall clock time and date at job start Tue Mar 31 2020 23:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30588 * 125.42762 * 2 1 4 4 N 1.40422 * 107.01045 * 179.77173 * 3 2 1 5 5 H 0.97000 * 126.83833 * 180.29485 * 4 3 2 6 6 C 1.35070 * 106.33127 * 0.40946 * 4 3 2 7 7 S 1.76198 * 126.08895 * 179.85606 * 6 4 3 8 8 C 1.81002 * 99.99878 * 179.71493 * 7 6 4 9 9 C 1.53006 * 109.47089 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00025 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00035 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99801 * 359.97438 * 12 10 9 14 14 C 1.50699 * 109.46966 * 90.00763 * 13 12 10 15 15 H 1.07998 * 120.00312 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99914 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99482 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00084 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47081 * 90.00299 * 18 16 14 20 20 H 1.48499 * 109.46957 * 210.00081 * 18 16 14 21 21 H 1.48499 * 109.47068 * 329.99978 * 18 16 14 22 22 C 1.46504 * 119.99735 * 179.97438 * 12 10 9 23 23 C 1.52992 * 109.47259 * 89.99776 * 22 12 10 24 24 C 1.53001 * 109.47190 * 179.97438 * 23 22 12 25 25 C 1.53010 * 109.46744 * 65.00121 * 24 23 22 26 26 C 1.53000 * 109.47531 * 184.99662 * 24 23 22 27 27 N 1.31654 * 107.82505 * 359.59360 * 6 4 3 28 28 H 1.08999 * 109.46742 * 269.97102 * 1 2 3 29 29 H 1.08997 * 109.47091 * 29.96962 * 1 2 3 30 30 H 1.08993 * 109.46784 * 149.97134 * 1 2 3 31 31 H 1.09001 * 109.47446 * 60.00463 * 8 7 6 32 32 H 1.09001 * 109.47383 * 300.00236 * 8 7 6 33 33 H 1.09001 * 109.47002 * 299.99666 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00103 * 9 8 7 35 35 H 1.09000 * 109.47065 * 210.00008 * 13 12 10 36 36 H 1.08990 * 109.47304 * 330.00300 * 13 12 10 37 37 H 0.97004 * 119.99288 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46561 * 209.99850 * 22 12 10 39 39 H 1.08998 * 109.47073 * 329.99510 * 22 12 10 40 40 H 1.08995 * 109.47623 * 299.99682 * 23 22 12 41 41 H 1.09004 * 109.47537 * 59.99559 * 23 22 12 42 42 H 1.09001 * 109.47320 * 305.00282 * 24 23 22 43 43 H 1.08999 * 109.46482 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.46932 * 299.99672 * 25 24 23 45 45 H 1.09001 * 109.47080 * 60.00014 * 25 24 23 46 46 H 1.09009 * 109.46632 * 60.00257 * 26 24 23 47 47 H 1.08996 * 109.47802 * 180.02562 * 26 24 23 48 48 H 1.09001 * 109.47325 * 300.00617 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2641 1.0641 0.0000 4 7 3.5964 0.6205 0.0053 5 1 4.3934 1.1733 0.0107 6 6 3.5472 -0.7293 -0.0010 7 16 4.9324 -1.8183 -0.0018 8 6 4.0778 -3.4139 -0.0027 9 6 5.1086 -4.5446 -0.0029 10 6 4.3971 -5.8730 -0.0044 11 8 3.1849 -5.9117 -0.0047 12 7 5.1078 -7.0181 -0.0042 13 6 6.5720 -6.9714 -0.0033 14 6 7.0731 -6.9560 1.4179 15 1 6.3712 -6.9783 2.2383 16 6 8.4278 -6.9124 1.6708 17 7 8.8651 -6.8984 2.9111 18 14 9.6420 -6.8730 0.2518 19 1 9.9187 -5.4632 -0.1240 20 1 10.9069 -7.5327 0.6643 21 1 9.0658 -7.5919 -0.9128 22 6 4.4160 -8.3096 -0.0051 23 6 4.1761 -8.7587 -1.4478 24 6 3.4542 -10.1077 -1.4486 25 6 2.0605 -9.9406 -0.8396 26 6 3.3250 -10.6162 -2.8858 27 7 2.2801 -1.0865 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5143 31 1 3.4532 -3.4911 -0.8928 32 1 3.4533 -3.4922 0.8872 33 1 5.7333 -4.4665 -0.8927 34 1 5.7328 -4.4673 0.8873 35 1 6.9639 -7.8492 -0.5171 36 1 6.9071 -6.0702 -0.5165 37 1 9.8182 -6.8681 3.0889 38 1 5.0287 -9.0502 0.5090 39 1 3.4597 -8.2098 0.5082 40 1 3.5634 -8.0181 -1.9618 41 1 5.1325 -8.8585 -1.9612 42 1 4.0246 -10.8255 -0.8591 43 1 1.5461 -10.9016 -0.8406 44 1 2.1525 -9.5784 0.1843 45 1 1.4900 -9.2228 -1.4291 46 1 4.3179 -10.7352 -3.3197 47 1 2.8103 -11.5770 -2.8865 48 1 2.7545 -9.8984 -3.4753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073382488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:27 Heat of formation + Delta-G solvation = 22.087904 kcal Electronic energy + Delta-G solvation = -27019.246651 eV Core-core repulsion = 23236.454723 eV Total energy + Delta-G solvation = -3782.791928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07040 -39.40816 -36.69273 -34.89536 -33.46849 -32.80832 -32.50659 -31.79325 -29.49200 -28.49839 -27.58372 -27.06000 -25.03380 -23.35136 -22.78395 -22.00718 -20.65487 -19.83002 -18.89349 -18.23323 -17.11843 -16.85814 -16.36435 -15.97136 -15.61937 -15.34456 -15.01983 -14.43872 -14.27652 -13.89021 -13.74918 -13.51051 -13.29653 -13.10426 -12.97547 -12.69772 -12.57419 -12.42310 -12.29590 -12.12901 -12.04585 -11.88138 -11.62331 -11.20718 -11.13008 -11.03850 -10.82552 -10.74218 -10.65409 -10.48630 -10.37342 -10.27450 -10.21577 -10.18716 -10.13294 -9.67176 -9.20103 -8.77681 -7.92440 -7.80998 -6.26788 -4.29258 0.85975 1.30562 1.94853 2.64965 2.71145 3.12870 3.21014 3.22921 3.24551 3.78025 4.21436 4.25573 4.48387 4.94421 4.98161 5.03260 5.06496 5.08620 5.17375 5.25223 5.36277 5.43149 5.57115 5.59661 5.68302 5.75467 5.77338 5.83658 5.93180 5.95723 5.98705 6.01638 6.05897 6.18945 6.23779 6.27172 6.27919 6.33088 6.42783 6.54707 6.57986 6.65343 6.68165 7.27393 7.38508 7.81750 8.05204 8.34403 8.76078 8.84769 9.32157 10.85671 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.003290 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.130059 B = 8508.385353 C =11329.759523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.233 3.767 3 N -0.317 5.317 4 N -0.469 5.469 5 H 0.443 0.557 6 C 0.267 3.733 7 S 0.005 5.995 8 C -0.076 4.076 9 C -0.130 4.130 10 C 0.527 3.473 11 O -0.564 6.564 12 N -0.588 5.588 13 C 0.207 3.793 14 C -0.544 4.544 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.889 5.889 18 Si 0.869 3.131 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.119 3.881 23 C -0.128 4.128 24 C -0.094 4.094 25 C -0.147 4.147 26 C -0.145 4.145 27 N -0.534 5.534 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 5.896 -9.202 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 N -0.148 5.148 4 N -0.189 5.189 5 H 0.290 0.710 6 C -0.119 4.119 7 S 0.233 5.767 8 C -0.225 4.225 9 C -0.172 4.172 10 C 0.313 3.687 11 O -0.445 6.445 12 N -0.318 5.318 13 C 0.085 3.915 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.696 3.304 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.004 4.004 23 C -0.167 4.167 24 C -0.113 4.113 25 C -0.205 4.205 26 C -0.202 4.202 27 N -0.267 5.267 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.388 6.505 -9.079 14.591 hybrid contribution 0.505 0.067 -0.525 0.731 sum -8.884 6.572 -9.604 14.641 Atomic orbital electron populations 1.20121 0.83670 1.04128 1.03916 1.24375 0.98410 0.85514 0.96843 1.77850 0.86489 1.22318 1.28140 1.47822 1.07884 1.04657 1.58544 0.71040 1.26428 0.98669 0.87489 0.99291 1.85849 1.00448 0.98755 1.91612 1.23370 1.00273 0.90093 1.08775 1.21434 0.98173 0.91018 1.06552 1.20030 0.87075 0.85530 0.76061 1.90639 1.13893 1.87753 1.52191 1.47880 1.08372 1.04743 1.70764 1.19838 0.75590 0.97589 0.98434 1.21375 0.92918 1.52699 0.91209 0.90297 1.24879 0.98122 0.94189 0.95459 1.69893 1.14876 1.49151 1.18655 0.86954 0.81396 0.79016 0.83062 1.19746 1.20861 1.18853 1.21405 0.98003 0.85008 0.95992 1.22005 1.00264 0.96373 0.98049 1.21054 0.96717 0.97043 0.96522 1.21877 0.96217 1.00989 1.01385 1.21823 1.01435 1.00529 0.96421 1.71027 0.98448 1.30634 1.26605 0.89671 0.89990 0.89332 0.87845 0.87547 0.88464 0.86347 0.94737 0.95274 0.92303 0.90351 0.90424 0.91858 0.92037 0.91121 0.93262 0.92167 0.92740 0.92861 0.93002 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.23 3.15 8.13 -156.87 -1.28 1.87 16 3 N -0.32 -4.30 12.78 32.42 0.41 -3.88 16 4 N -0.47 -5.69 7.47 30.45 0.23 -5.46 16 5 H 0.44 3.87 8.96 -182.35 -1.63 2.24 16 6 C 0.27 3.68 8.31 -89.38 -0.74 2.94 16 7 S 0.01 0.07 22.31 -107.50 -2.40 -2.33 16 8 C -0.08 -1.12 4.50 37.16 0.17 -0.96 16 9 C -0.13 -2.10 4.26 -27.88 -0.12 -2.22 16 10 C 0.53 9.98 7.67 -10.99 -0.08 9.90 16 11 O -0.56 -11.67 15.56 5.56 0.09 -11.59 16 12 N -0.59 -11.29 2.46 -175.07 -0.43 -11.72 16 13 C 0.21 4.29 4.03 -5.20 -0.02 4.27 16 14 C -0.54 -13.65 9.83 -34.44 -0.34 -13.99 16 15 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 16 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.89 -25.04 13.96 55.43 0.77 -24.27 16 18 Si 0.87 19.00 27.47 -169.99 -4.67 14.33 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 22 C 0.12 2.04 5.16 -4.04 -0.02 2.02 16 23 C -0.13 -1.87 5.01 -26.73 -0.13 -2.00 16 24 C -0.09 -1.15 2.92 -90.61 -0.26 -1.42 16 25 C -0.15 -1.77 8.95 37.16 0.33 -1.44 16 26 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 27 N -0.53 -8.10 10.58 -10.85 -0.11 -8.21 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.57 8.10 -51.92 -0.42 1.15 16 32 H 0.11 1.73 8.10 -51.92 -0.42 1.30 16 33 H 0.10 1.40 7.40 -51.93 -0.38 1.02 16 34 H 0.12 2.06 8.00 -51.93 -0.42 1.65 16 35 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 36 H 0.03 0.57 5.87 -51.93 -0.30 0.27 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 38 H 0.08 1.36 8.07 -51.93 -0.42 0.95 16 39 H 0.08 1.37 5.84 -51.93 -0.30 1.07 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -30.86 407.25 -11.10 -41.97 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -9.25 Total: 5.51 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.88 Total: -0.47 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.87 Total: -53.55 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.67 Total: 14.33 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.40 Total: -2.33 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.86 -11.10 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073382488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.053 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds