Wall clock time and date at job start Tue Mar 31 2020 23:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30588 * 125.42762 * 2 1 4 4 N 1.40422 * 107.01045 * 179.77173 * 3 2 1 5 5 H 0.97000 * 126.83833 * 180.29485 * 4 3 2 6 6 C 1.35070 * 106.33127 * 0.40946 * 4 3 2 7 7 S 1.76198 * 126.08895 * 179.85606 * 6 4 3 8 8 C 1.81002 * 99.99878 * 179.71493 * 7 6 4 9 9 C 1.53006 * 109.47089 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00025 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00035 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99801 * 359.97438 * 12 10 9 14 14 C 1.50699 * 109.46966 * 90.00763 * 13 12 10 15 15 H 1.07998 * 120.00312 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99914 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99482 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00084 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47081 * 90.00299 * 18 16 14 20 20 H 1.48499 * 109.46957 * 210.00081 * 18 16 14 21 21 H 1.48499 * 109.47068 * 329.99978 * 18 16 14 22 22 C 1.46504 * 119.99735 * 179.97438 * 12 10 9 23 23 C 1.52992 * 109.47259 * 89.99776 * 22 12 10 24 24 C 1.53001 * 109.47190 * 179.97438 * 23 22 12 25 25 C 1.53010 * 109.46744 * 65.00121 * 24 23 22 26 26 C 1.53000 * 109.47531 * 184.99662 * 24 23 22 27 27 N 1.31654 * 107.82505 * 359.59360 * 6 4 3 28 28 H 1.08999 * 109.46742 * 269.97102 * 1 2 3 29 29 H 1.08997 * 109.47091 * 29.96962 * 1 2 3 30 30 H 1.08993 * 109.46784 * 149.97134 * 1 2 3 31 31 H 1.09001 * 109.47446 * 60.00463 * 8 7 6 32 32 H 1.09001 * 109.47383 * 300.00236 * 8 7 6 33 33 H 1.09001 * 109.47002 * 299.99666 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00103 * 9 8 7 35 35 H 1.09000 * 109.47065 * 210.00008 * 13 12 10 36 36 H 1.08990 * 109.47304 * 330.00300 * 13 12 10 37 37 H 0.97004 * 119.99288 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46561 * 209.99850 * 22 12 10 39 39 H 1.08998 * 109.47073 * 329.99510 * 22 12 10 40 40 H 1.08995 * 109.47623 * 299.99682 * 23 22 12 41 41 H 1.09004 * 109.47537 * 59.99559 * 23 22 12 42 42 H 1.09001 * 109.47320 * 305.00282 * 24 23 22 43 43 H 1.08999 * 109.46482 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.46932 * 299.99672 * 25 24 23 45 45 H 1.09001 * 109.47080 * 60.00014 * 25 24 23 46 46 H 1.09009 * 109.46632 * 60.00257 * 26 24 23 47 47 H 1.08996 * 109.47802 * 180.02562 * 26 24 23 48 48 H 1.09001 * 109.47325 * 300.00617 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2641 1.0641 0.0000 4 7 3.5964 0.6205 0.0053 5 1 4.3934 1.1733 0.0107 6 6 3.5472 -0.7293 -0.0010 7 16 4.9324 -1.8183 -0.0018 8 6 4.0778 -3.4139 -0.0027 9 6 5.1086 -4.5446 -0.0029 10 6 4.3971 -5.8730 -0.0044 11 8 3.1849 -5.9117 -0.0047 12 7 5.1078 -7.0181 -0.0042 13 6 6.5720 -6.9714 -0.0033 14 6 7.0731 -6.9560 1.4179 15 1 6.3712 -6.9783 2.2383 16 6 8.4278 -6.9124 1.6708 17 7 8.8651 -6.8984 2.9111 18 14 9.6420 -6.8730 0.2518 19 1 9.9187 -5.4632 -0.1240 20 1 10.9069 -7.5327 0.6643 21 1 9.0658 -7.5919 -0.9128 22 6 4.4160 -8.3096 -0.0051 23 6 4.1761 -8.7587 -1.4478 24 6 3.4542 -10.1077 -1.4486 25 6 2.0605 -9.9406 -0.8396 26 6 3.3250 -10.6162 -2.8858 27 7 2.2801 -1.0865 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5143 31 1 3.4532 -3.4911 -0.8928 32 1 3.4533 -3.4922 0.8872 33 1 5.7333 -4.4665 -0.8927 34 1 5.7328 -4.4673 0.8873 35 1 6.9639 -7.8492 -0.5171 36 1 6.9071 -6.0702 -0.5165 37 1 9.8182 -6.8681 3.0889 38 1 5.0287 -9.0502 0.5090 39 1 3.4597 -8.2098 0.5082 40 1 3.5634 -8.0181 -1.9618 41 1 5.1325 -8.8585 -1.9612 42 1 4.0246 -10.8255 -0.8591 43 1 1.5461 -10.9016 -0.8406 44 1 2.1525 -9.5784 0.1843 45 1 1.4900 -9.2228 -1.4291 46 1 4.3179 -10.7352 -3.3197 47 1 2.8103 -11.5770 -2.8865 48 1 2.7545 -9.8984 -3.4753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073382488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:26 Heat of formation + Delta-G solvation = 5.210492 kcal Electronic energy + Delta-G solvation = -27019.978510 eV Core-core repulsion = 23236.454723 eV Total energy + Delta-G solvation = -3783.523787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.08638 -40.92365 -37.89659 -36.40735 -34.49786 -34.43053 -34.00841 -32.84307 -30.91458 -29.34332 -29.24098 -27.99056 -26.28821 -24.57493 -24.40985 -23.32611 -21.63810 -20.87881 -20.05638 -19.61964 -19.03914 -18.25179 -17.50364 -17.12769 -17.04234 -16.71403 -16.14210 -16.05559 -15.57149 -15.05036 -14.72583 -14.66922 -14.56847 -14.44179 -14.10780 -13.93863 -13.85084 -13.63117 -13.43269 -13.31936 -13.12326 -13.09703 -12.78528 -12.75781 -12.53916 -12.38790 -12.18672 -12.05199 -11.82436 -11.76319 -11.58676 -11.51855 -11.45012 -11.39253 -11.26975 -11.09802 -10.80651 -10.67769 -9.40450 -8.96200 -8.26464 -6.34455 -0.20787 0.27101 0.80071 1.43853 1.46005 1.54855 1.62302 1.71975 1.80238 2.31909 2.37963 3.07820 3.37702 3.49308 3.66709 3.74833 3.88955 3.98774 4.00859 4.09894 4.35809 4.47205 4.57867 4.69387 4.69596 4.71567 4.72051 4.72853 4.79946 4.81258 4.86663 4.90978 4.93940 4.98391 5.00294 5.05444 5.15024 5.16649 5.34763 5.37529 5.47563 5.48800 5.52971 5.73826 5.82900 6.20893 6.62025 6.72855 6.80748 7.24437 7.35731 8.89719 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.003290 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.130059 B = 8508.385353 C =11329.759523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.222 3.778 3 N -0.329 5.329 4 N -0.458 5.458 5 H 0.457 0.543 6 C 0.254 3.746 7 S 0.046 5.954 8 C -0.073 4.073 9 C -0.124 4.124 10 C 0.520 3.480 11 O -0.585 6.585 12 N -0.594 5.594 13 C 0.215 3.785 14 C -0.541 4.541 15 H 0.029 0.971 16 C 0.020 3.980 17 N -0.943 5.943 18 Si 0.938 3.062 19 H -0.257 1.257 20 H -0.290 1.290 21 H -0.237 1.237 22 C 0.116 3.884 23 C -0.116 4.116 24 C -0.093 4.093 25 C -0.146 4.146 26 C -0.140 4.140 27 N -0.563 5.563 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.268 0.732 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.048 0.952 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 6.176 -11.810 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.062 4.062 3 N -0.160 5.160 4 N -0.181 5.181 5 H 0.306 0.694 6 C -0.132 4.132 7 S 0.273 5.727 8 C -0.222 4.222 9 C -0.165 4.165 10 C 0.307 3.693 11 O -0.467 6.467 12 N -0.323 5.323 13 C 0.093 3.907 14 C -0.580 4.580 15 H 0.047 0.953 16 C -0.179 4.179 17 N -0.582 5.582 18 Si 0.760 3.240 19 H -0.182 1.182 20 H -0.216 1.216 21 H -0.160 1.160 22 C -0.007 4.007 23 C -0.155 4.155 24 C -0.112 4.112 25 C -0.203 4.203 26 C -0.198 4.198 27 N -0.298 5.298 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.996 6.796 -11.704 16.251 hybrid contribution 0.292 -0.001 0.408 0.502 sum -8.704 6.795 -11.296 15.796 Atomic orbital electron populations 1.20300 0.81195 1.05224 1.05010 1.25117 1.00002 0.84939 0.96184 1.77807 0.86945 1.22699 1.28587 1.47791 1.08199 1.04323 1.57761 0.69412 1.26561 0.98790 0.88226 0.99586 1.85620 0.98958 0.96566 1.91508 1.23155 0.99928 0.91449 1.07685 1.21377 0.98240 0.89943 1.06925 1.20519 0.86987 0.86377 0.75371 1.90623 1.14885 1.88140 1.53069 1.47972 1.07992 1.05638 1.70738 1.19693 0.76335 0.98966 0.95701 1.21512 0.92292 1.51908 0.92256 0.95261 1.25784 1.00236 0.93654 0.98194 1.70064 1.15344 1.51266 1.21523 0.85860 0.78111 0.79991 0.80021 1.18162 1.21587 1.16011 1.21505 0.97059 0.84224 0.97892 1.21894 1.00596 0.97348 0.95636 1.21066 0.96410 0.95732 0.98008 1.21857 0.96370 1.01790 1.00276 1.21784 1.01978 1.01167 0.94851 1.71022 0.99266 1.31878 1.27594 0.88477 0.88139 0.88956 0.88148 0.89483 0.86006 0.87684 0.93579 0.92960 0.92334 0.91038 0.91572 0.92828 0.91555 0.90789 0.91382 0.93723 0.93280 0.92379 0.91513 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.51 71.24 0.75 -0.25 16 2 C 0.22 5.81 8.13 138.64 1.13 6.94 16 3 N -0.33 -8.58 12.78 -51.33 -0.66 -9.24 16 4 N -0.46 -10.61 7.47 -57.58 -0.43 -11.04 16 5 H 0.46 7.33 8.96 -213.11 -1.91 5.42 16 6 C 0.25 6.79 8.31 179.91 1.50 8.29 16 7 S 0.05 1.11 22.31 -56.49 -1.26 -0.15 16 8 C -0.07 -2.14 4.50 71.98 0.32 -1.81 16 9 C -0.12 -3.92 4.26 29.85 0.13 -3.79 16 10 C 0.52 19.78 7.67 87.66 0.67 20.45 16 11 O -0.59 -24.65 15.56 -3.04 -0.05 -24.70 16 12 N -0.59 -22.75 2.46 -826.19 -2.03 -24.78 16 13 C 0.21 8.63 4.03 85.63 0.35 8.97 16 14 C -0.54 -27.55 9.83 25.60 0.25 -27.30 16 15 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 16 C 0.02 1.06 5.47 84.65 0.46 1.52 16 17 N -0.94 -54.47 13.96 21.45 0.30 -54.17 16 18 Si 0.94 37.87 27.47 68.60 1.88 39.75 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.24 -8.50 6.54 99.48 0.65 -7.85 16 22 C 0.12 4.01 5.16 86.38 0.45 4.46 16 23 C -0.12 -3.27 5.01 30.59 0.15 -3.12 16 24 C -0.09 -2.15 2.92 -10.79 -0.03 -2.18 16 25 C -0.15 -3.38 8.95 71.99 0.64 -2.74 16 26 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 27 N -0.56 -16.86 10.58 -188.25 -1.99 -18.85 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 3.03 8.10 -2.39 -0.02 3.01 16 32 H 0.09 2.90 8.10 -2.39 -0.02 2.88 16 33 H 0.12 3.24 7.40 -2.39 -0.02 3.22 16 34 H 0.10 3.66 8.00 -2.39 -0.02 3.65 16 35 H 0.05 1.78 7.13 -2.39 -0.02 1.76 16 36 H 0.05 1.89 5.87 -2.39 -0.01 1.88 16 37 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 39 H 0.07 2.43 5.84 -2.39 -0.01 2.41 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.04 1.16 6.57 -2.39 -0.02 1.14 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.07 407.25 2.19 -65.88 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -1.01 Total: 29.85 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 7.43 Total: 7.44 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -4.81 Total: -118.08 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.88 Total: 39.75 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -1.26 Total: -0.15 kcal Total: -68.07 2.19 -65.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073382488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.094 kcal (2) G-P(sol) polarization free energy of solvation -68.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds