Wall clock time and date at job start Tue Mar 31 2020 22:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38292 * 119.97065 * 2 1 4 4 C 1.38261 * 120.13192 * 179.97438 * 3 2 1 5 5 C 1.38144 * 120.06573 * 359.97438 * 4 3 2 6 6 C 1.38804 * 119.93354 * 0.02562 * 5 4 3 7 7 N 1.40226 * 120.06353 * 179.97438 * 6 5 4 8 8 C 1.35075 * 126.61461 * 4.71359 * 7 6 5 9 9 C 1.36623 * 106.79182 * 179.90490 * 8 7 6 10 10 C 1.47513 * 125.76331 * 180.13363 * 9 8 7 11 11 O 1.21597 * 120.00220 * 354.02935 * 10 9 8 12 12 N 1.34769 * 119.99915 * 174.02360 * 10 9 8 13 13 C 1.46506 * 120.00211 * 4.19410 * 12 10 9 14 14 C 1.50697 * 109.47090 * 83.42952 * 13 12 10 15 15 H 1.08008 * 119.99909 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00301 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99836 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99550 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47410 * 90.00367 * 18 16 14 20 20 H 1.48507 * 109.46524 * 210.00304 * 18 16 14 21 21 H 1.48498 * 109.47343 * 329.99849 * 18 16 14 22 22 C 1.46496 * 120.00227 * 184.19541 * 12 10 9 23 23 C 1.53010 * 109.47346 * 94.91872 * 22 12 10 24 24 C 1.52998 * 117.49710 * 243.74972 * 23 22 12 25 25 C 1.52999 * 117.49848 * 175.08727 * 23 22 12 26 26 N 1.34417 * 108.46706 * 0.36206 * 9 8 7 27 27 N 1.28744 * 109.57681 * 359.77128 * 26 9 8 28 28 C 1.38108 * 119.96465 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46957 * 270.02768 * 1 2 3 30 30 H 1.09000 * 109.47035 * 30.02384 * 1 2 3 31 31 H 1.09000 * 109.47517 * 150.02610 * 1 2 3 32 32 H 1.07997 * 119.93313 * 359.97170 * 3 2 1 33 33 H 1.08003 * 119.96426 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.03093 * 180.27603 * 5 4 3 35 35 H 1.07993 * 126.60107 * 0.03296 * 8 7 6 36 36 H 1.08997 * 109.47342 * 203.43161 * 13 12 10 37 37 H 1.09003 * 109.46951 * 323.43071 * 13 12 10 38 38 H 0.97005 * 119.99190 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47554 * 214.91762 * 22 12 10 40 40 H 1.09005 * 109.47289 * 334.91996 * 22 12 10 41 41 H 1.09004 * 115.54483 * 29.41942 * 23 22 12 42 42 H 1.08994 * 117.50214 * 0.02562 * 24 23 22 43 43 H 1.09003 * 117.49477 * 145.02257 * 24 23 22 44 44 H 1.08994 * 117.49747 * 214.97720 * 25 23 22 45 45 H 1.08995 * 117.50152 * 0.02562 * 25 23 22 46 46 H 1.08005 * 120.02976 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5804 1.2019 0.0005 5 6 4.2759 0.0083 0.0016 6 6 3.5852 -1.1957 0.0016 7 7 4.2884 -2.4089 0.0021 8 6 5.6272 -2.5641 0.0918 9 6 5.8721 -3.9077 0.0563 10 6 7.2010 -4.5441 0.1290 11 8 8.2049 -3.8581 0.1206 12 7 7.3023 -5.8858 0.2049 13 6 6.0988 -6.7172 0.1227 14 6 5.7381 -6.9371 -1.3239 15 1 6.3445 -6.5009 -2.1040 16 6 4.6335 -7.6944 -1.6516 17 7 4.3185 -7.8859 -2.9140 18 14 3.5844 -8.4483 -0.3023 19 1 2.5099 -7.4968 0.0793 20 1 2.9761 -9.7102 -0.7952 21 1 4.4331 -8.7373 0.8815 22 6 8.6159 -6.5130 0.3697 23 6 8.8741 -6.7733 1.8553 24 6 10.0404 -6.0305 2.5102 25 6 10.1498 -7.5312 2.2284 26 7 4.6980 -4.5515 -0.0612 27 7 3.7378 -3.6947 -0.0962 28 6 2.1968 -1.1965 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6563 2.1324 -0.0005 33 1 4.1172 2.1391 0.0010 34 1 5.3559 0.0120 0.0065 35 1 6.3623 -1.7776 0.1774 36 1 6.2879 -7.6785 0.6002 37 1 5.2751 -6.2152 0.6303 38 1 3.5415 -8.4190 -3.1444 39 1 8.6383 -7.4576 -0.1738 40 1 9.3870 -5.8498 -0.0223 41 1 7.9866 -6.9520 2.4624 42 1 10.6234 -5.3562 1.8831 43 1 9.9204 -5.7210 3.5485 44 1 10.1017 -8.2081 3.0812 45 1 10.8053 -7.8440 1.4157 46 1 1.6567 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:52 Heat of formation + Delta-G solvation = 133.426635 kcal Electronic energy + Delta-G solvation = -29010.370325 eV Core-core repulsion = 25096.962455 eV Total energy + Delta-G solvation = -3913.407869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.05979 -39.65910 -38.95326 -36.95272 -35.07046 -34.51658 -32.66735 -32.26454 -30.90407 -29.94213 -28.24051 -27.28964 -26.52984 -24.19631 -23.34083 -22.48943 -22.15616 -21.69605 -20.85170 -20.35315 -19.12616 -17.70156 -16.87436 -16.64815 -16.07937 -15.88926 -15.73508 -15.22692 -15.05744 -14.66820 -14.41888 -14.10282 -14.01874 -13.91040 -13.51230 -13.41714 -13.12790 -12.59301 -12.52232 -12.45579 -12.18441 -12.01693 -11.91106 -11.73094 -11.44879 -11.31620 -11.24992 -10.89410 -10.75817 -10.67911 -10.35543 -10.08398 -10.04943 -9.66007 -9.43340 -9.36362 -9.21924 -9.08701 -8.52244 -8.41692 -7.72816 -5.99930 -3.96750 0.48552 1.00395 1.83003 2.19382 2.29579 3.37378 3.41962 3.44802 3.46064 3.66051 3.86793 4.07947 4.30672 4.47244 4.49831 4.56307 4.77949 4.86742 4.93336 5.00994 5.04938 5.08981 5.17498 5.22148 5.32194 5.34028 5.35788 5.40504 5.43288 5.65297 5.70770 5.79706 5.80250 5.88827 6.02780 6.07481 6.10113 6.19119 6.20738 6.27943 6.31222 6.42329 6.49994 6.64959 6.87600 7.07061 7.42054 7.67508 8.11744 8.36973 8.56920 8.83457 9.03419 9.61888 11.13529 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.003658 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.895807 B = 7653.016572 C = 9750.790497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.125 4.125 4 C -0.092 4.092 5 C -0.137 4.137 6 C 0.154 3.846 7 N -0.326 5.326 8 C 0.077 3.923 9 C -0.076 4.076 10 C 0.605 3.395 11 O -0.566 6.566 12 N -0.571 5.571 13 C 0.198 3.802 14 C -0.515 4.515 15 H 0.072 0.928 16 C 0.083 3.917 17 N -0.899 5.899 18 Si 0.870 3.130 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.147 3.853 23 C -0.163 4.163 24 C -0.176 4.176 25 C -0.178 4.178 26 N -0.137 5.137 27 N -0.072 5.072 28 C -0.110 4.110 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.201 0.799 36 H 0.030 0.970 37 H 0.059 0.941 38 H 0.263 0.737 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 16.015 9.704 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.111 4.111 5 C -0.158 4.158 6 C 0.061 3.939 7 N -0.104 5.104 8 C -0.075 4.075 9 C -0.212 4.212 10 C 0.391 3.609 11 O -0.446 6.446 12 N -0.299 5.299 13 C 0.077 3.923 14 C -0.553 4.553 15 H 0.090 0.910 16 C -0.120 4.120 17 N -0.538 5.538 18 Si 0.697 3.303 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.192 1.192 22 C 0.024 3.976 23 C -0.183 4.183 24 C -0.213 4.213 25 C -0.216 4.216 26 N -0.011 5.011 27 N -0.050 5.050 28 C -0.130 4.130 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.217 0.783 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.874 15.371 9.445 18.138 hybrid contribution 0.133 0.058 0.527 0.547 sum -1.742 15.429 9.972 18.454 Atomic orbital electron populations 1.20830 0.90318 1.03357 1.02766 1.19825 0.96574 0.92119 0.98045 1.21148 0.94225 0.97762 1.01232 1.20962 0.94158 0.97278 0.98685 1.20949 1.00601 0.90600 1.03672 1.17610 0.91666 0.81919 1.02681 1.47760 1.05378 1.07526 1.49737 1.23180 0.85582 0.98985 0.99793 1.21477 0.94669 0.90298 1.14786 1.16666 0.85383 0.82399 0.76429 1.90697 1.36483 1.63464 1.53998 1.47721 1.08919 1.05044 1.68210 1.20269 0.82591 0.90279 0.99148 1.21157 1.11781 1.32104 0.90289 0.91037 1.24705 0.96591 0.95662 0.95001 1.69901 1.27247 1.40048 1.16556 0.86944 0.81742 0.78841 0.82772 1.19493 1.21516 1.19168 1.20964 0.85263 0.98743 0.92607 1.22798 0.92991 1.04529 0.97945 1.22995 1.02579 0.94446 1.01303 1.22919 1.00778 0.94655 1.03234 1.75230 0.97143 1.22546 1.06171 1.82217 1.18455 0.81540 1.22815 1.20883 0.91457 0.99555 1.01103 0.90726 0.91131 0.90941 0.85353 0.84798 0.84847 0.78273 0.95181 0.92360 0.92754 0.89641 0.89964 0.87828 0.88589 0.89478 0.89113 0.88733 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.01 36.00 0.36 -0.48 16 2 C -0.06 -0.63 5.88 -104.65 -0.62 -1.25 16 3 C -0.12 -1.03 9.70 -39.55 -0.38 -1.41 16 4 C -0.09 -0.77 10.04 -39.61 -0.40 -1.16 16 5 C -0.14 -1.44 9.47 -39.41 -0.37 -1.81 16 6 C 0.15 2.08 6.69 -83.58 -0.56 1.52 16 7 N -0.33 -5.48 3.82 -10.43 -0.04 -5.52 16 8 C 0.08 1.29 10.60 -16.71 -0.18 1.11 16 9 C -0.08 -1.56 6.68 -83.54 -0.56 -2.12 16 10 C 0.61 13.04 7.61 -12.48 -0.09 12.94 16 11 O -0.57 -12.29 16.36 5.28 0.09 -12.21 16 12 N -0.57 -12.28 2.48 -176.29 -0.44 -12.72 16 13 C 0.20 4.73 3.85 -5.19 -0.02 4.71 16 14 C -0.51 -14.39 8.94 -34.44 -0.31 -14.70 16 15 H 0.07 2.24 8.06 -52.48 -0.42 1.82 16 16 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 17 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 18 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 22 C 0.15 2.69 5.74 -4.04 -0.02 2.67 16 23 C -0.16 -2.54 6.01 -90.62 -0.54 -3.09 16 24 C -0.18 -2.38 10.18 -26.69 -0.27 -2.65 16 25 C -0.18 -2.25 10.26 -26.69 -0.27 -2.52 16 26 N -0.14 -3.13 8.08 32.85 0.27 -2.86 16 27 N -0.07 -1.49 13.13 60.35 0.79 -0.70 16 28 C -0.11 -1.38 9.33 -39.40 -0.37 -1.75 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 34 H 0.13 1.16 6.83 -52.49 -0.36 0.80 16 35 H 0.20 2.51 7.15 -52.49 -0.38 2.14 16 36 H 0.03 0.70 7.08 -51.93 -0.37 0.34 16 37 H 0.06 1.43 4.72 -51.93 -0.24 1.18 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 40 H 0.08 1.49 6.96 -51.93 -0.36 1.13 16 41 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 42 H 0.10 1.32 8.03 -51.93 -0.42 0.90 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.14 1.89 7.74 -52.48 -0.41 1.49 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -34.10 388.47 -8.42 -42.52 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.34 Total: 3.19 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -4.70 Total: -7.71 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 1.36 Total: -48.65 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.10 -8.42 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.944 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds