Wall clock time and date at job start Tue Mar 31 2020 22:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38292 * 119.97065 * 2 1 4 4 C 1.38261 * 120.13192 * 179.97438 * 3 2 1 5 5 C 1.38144 * 120.06573 * 359.97438 * 4 3 2 6 6 C 1.38804 * 119.93354 * 0.02562 * 5 4 3 7 7 N 1.40226 * 120.06353 * 179.97438 * 6 5 4 8 8 C 1.35075 * 126.61461 * 4.71359 * 7 6 5 9 9 C 1.36623 * 106.79182 * 179.90490 * 8 7 6 10 10 C 1.47513 * 125.76331 * 180.13363 * 9 8 7 11 11 O 1.21597 * 120.00220 * 354.02935 * 10 9 8 12 12 N 1.34769 * 119.99915 * 174.02360 * 10 9 8 13 13 C 1.46506 * 120.00211 * 4.19410 * 12 10 9 14 14 C 1.50697 * 109.47090 * 83.42952 * 13 12 10 15 15 H 1.08008 * 119.99909 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00301 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99836 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99550 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47410 * 90.00367 * 18 16 14 20 20 H 1.48507 * 109.46524 * 210.00304 * 18 16 14 21 21 H 1.48498 * 109.47343 * 329.99849 * 18 16 14 22 22 C 1.46496 * 120.00227 * 184.19541 * 12 10 9 23 23 C 1.53010 * 109.47346 * 94.91872 * 22 12 10 24 24 C 1.52998 * 117.49710 * 243.74972 * 23 22 12 25 25 C 1.52999 * 117.49848 * 175.08727 * 23 22 12 26 26 N 1.34417 * 108.46706 * 0.36206 * 9 8 7 27 27 N 1.28744 * 109.57681 * 359.77128 * 26 9 8 28 28 C 1.38108 * 119.96465 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46957 * 270.02768 * 1 2 3 30 30 H 1.09000 * 109.47035 * 30.02384 * 1 2 3 31 31 H 1.09000 * 109.47517 * 150.02610 * 1 2 3 32 32 H 1.07997 * 119.93313 * 359.97170 * 3 2 1 33 33 H 1.08003 * 119.96426 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.03093 * 180.27603 * 5 4 3 35 35 H 1.07993 * 126.60107 * 0.03296 * 8 7 6 36 36 H 1.08997 * 109.47342 * 203.43161 * 13 12 10 37 37 H 1.09003 * 109.46951 * 323.43071 * 13 12 10 38 38 H 0.97005 * 119.99190 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47554 * 214.91762 * 22 12 10 40 40 H 1.09005 * 109.47289 * 334.91996 * 22 12 10 41 41 H 1.09004 * 115.54483 * 29.41942 * 23 22 12 42 42 H 1.08994 * 117.50214 * 0.02562 * 24 23 22 43 43 H 1.09003 * 117.49477 * 145.02257 * 24 23 22 44 44 H 1.08994 * 117.49747 * 214.97720 * 25 23 22 45 45 H 1.08995 * 117.50152 * 0.02562 * 25 23 22 46 46 H 1.08005 * 120.02976 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5804 1.2019 0.0005 5 6 4.2759 0.0083 0.0016 6 6 3.5852 -1.1957 0.0016 7 7 4.2884 -2.4089 0.0021 8 6 5.6272 -2.5641 0.0918 9 6 5.8721 -3.9077 0.0563 10 6 7.2010 -4.5441 0.1290 11 8 8.2049 -3.8581 0.1206 12 7 7.3023 -5.8858 0.2049 13 6 6.0988 -6.7172 0.1227 14 6 5.7381 -6.9371 -1.3239 15 1 6.3445 -6.5009 -2.1040 16 6 4.6335 -7.6944 -1.6516 17 7 4.3185 -7.8859 -2.9140 18 14 3.5844 -8.4483 -0.3023 19 1 2.5099 -7.4968 0.0793 20 1 2.9761 -9.7102 -0.7952 21 1 4.4331 -8.7373 0.8815 22 6 8.6159 -6.5130 0.3697 23 6 8.8741 -6.7733 1.8553 24 6 10.0404 -6.0305 2.5102 25 6 10.1498 -7.5312 2.2284 26 7 4.6980 -4.5515 -0.0612 27 7 3.7378 -3.6947 -0.0962 28 6 2.1968 -1.1965 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.6563 2.1324 -0.0005 33 1 4.1172 2.1391 0.0010 34 1 5.3559 0.0120 0.0065 35 1 6.3623 -1.7776 0.1774 36 1 6.2879 -7.6785 0.6002 37 1 5.2751 -6.2152 0.6303 38 1 3.5415 -8.4190 -3.1444 39 1 8.6383 -7.4576 -0.1738 40 1 9.3870 -5.8498 -0.0223 41 1 7.9866 -6.9520 2.4624 42 1 10.6234 -5.3562 1.8831 43 1 9.9204 -5.7210 3.5485 44 1 10.1017 -8.2081 3.0812 45 1 10.8053 -7.8440 1.4157 46 1 1.6567 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:51 Heat of formation + Delta-G solvation = 113.446791 kcal Electronic energy + Delta-G solvation = -29011.236716 eV Core-core repulsion = 25096.962455 eV Total energy + Delta-G solvation = -3914.274260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.47030 -40.79984 -40.26442 -38.22064 -36.62093 -35.81212 -34.39891 -33.44896 -32.27883 -31.07526 -30.12138 -28.15762 -27.90905 -25.37565 -24.90981 -24.11214 -23.18246 -22.93357 -21.90308 -21.61054 -20.52438 -19.08935 -18.93421 -17.82897 -17.52808 -17.22419 -16.99394 -16.34020 -16.26101 -16.17670 -15.79728 -15.63461 -15.01999 -14.89223 -14.84179 -14.61791 -14.41434 -14.22722 -13.99171 -13.51184 -13.43213 -13.42413 -13.09472 -12.90916 -12.66286 -12.54629 -12.50201 -12.29911 -12.12606 -12.07052 -11.99225 -11.81048 -11.62680 -11.33554 -11.03412 -10.81425 -10.67447 -10.57935 -9.89996 -9.53196 -9.43090 -8.24318 -6.24962 -0.58832 0.23254 0.61992 0.80386 0.98208 1.35363 1.42546 1.46071 2.10522 2.25566 2.38991 2.64422 2.94364 3.14302 3.19468 3.26474 3.65382 3.74890 3.84470 3.85859 4.01269 4.03653 4.08435 4.14780 4.24036 4.25089 4.37922 4.47830 4.53770 4.66547 4.78059 4.79227 4.80548 4.81675 4.84359 4.87023 5.04381 5.12743 5.20578 5.27735 5.29816 5.30976 5.31568 5.43931 5.53755 5.57430 5.69904 5.92427 6.19794 6.49878 6.71759 6.89219 7.18000 7.38329 8.93154 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.003658 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.895807 B = 7653.016572 C = 9750.790497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.110 4.110 4 C -0.085 4.085 5 C -0.134 4.134 6 C 0.107 3.893 7 N -0.308 5.308 8 C 0.101 3.899 9 C -0.112 4.112 10 C 0.602 3.398 11 O -0.573 6.573 12 N -0.579 5.579 13 C 0.213 3.787 14 C -0.505 4.505 15 H 0.022 0.978 16 C 0.029 3.971 17 N -0.949 5.949 18 Si 0.930 3.070 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.240 1.240 22 C 0.146 3.854 23 C -0.186 4.186 24 C -0.170 4.170 25 C -0.155 4.155 26 N -0.180 5.180 27 N -0.105 5.105 28 C -0.130 4.130 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.166 0.834 33 H 0.173 0.827 34 H 0.152 0.848 35 H 0.242 0.758 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.264 0.736 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 18.903 11.965 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.128 4.128 4 C -0.103 4.103 5 C -0.154 4.154 6 C 0.016 3.984 7 N -0.085 5.085 8 C -0.054 4.054 9 C -0.251 4.251 10 C 0.388 3.612 11 O -0.454 6.454 12 N -0.307 5.307 13 C 0.090 3.910 14 C -0.544 4.544 15 H 0.041 0.959 16 C -0.169 4.169 17 N -0.590 5.590 18 Si 0.754 3.246 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.163 1.163 22 C 0.023 3.977 23 C -0.205 4.205 24 C -0.206 4.206 25 C -0.192 4.192 26 N -0.052 5.052 27 N -0.083 5.083 28 C -0.150 4.150 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.183 0.817 33 H 0.191 0.809 34 H 0.170 0.830 35 H 0.258 0.742 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.703 18.263 11.723 21.769 hybrid contribution 0.051 -0.505 -0.246 0.564 sum -1.653 17.758 11.478 21.209 Atomic orbital electron populations 1.20894 0.88743 1.03993 1.03621 1.20138 0.97832 0.91672 0.97450 1.21649 0.94563 0.98374 0.98207 1.21459 0.94407 0.97780 0.96675 1.21295 1.01721 0.89949 1.02456 1.18094 0.92218 0.81471 1.06573 1.47904 1.05601 1.07623 1.47391 1.23706 0.86046 0.98431 0.97193 1.21631 0.94018 0.91959 1.17445 1.16855 0.85859 0.82398 0.76039 1.90663 1.36762 1.63437 1.54575 1.47749 1.09300 1.05150 1.68467 1.19945 0.83823 0.90996 0.96210 1.21231 1.10844 1.30943 0.91378 0.95934 1.25493 0.97897 0.96331 0.97131 1.70048 1.28275 1.41743 1.18945 0.85969 0.80059 0.77829 0.80702 1.19886 1.20876 1.16334 1.21082 0.83701 0.98003 0.94876 1.22608 0.94105 1.08008 0.95829 1.23047 1.00718 0.95190 1.01695 1.23043 0.97980 0.94422 1.03801 1.75126 0.98109 1.24209 1.07807 1.82087 1.18595 0.83154 1.24498 1.20939 0.91480 1.00076 1.02524 0.89697 0.88818 0.92016 0.81686 0.80941 0.82993 0.74177 0.94200 0.92241 0.92726 0.90341 0.90285 0.88606 0.88984 0.88057 0.87111 0.87836 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.07 -1.23 5.88 -19.88 -0.12 -1.34 16 3 C -0.11 -1.34 9.70 22.29 0.22 -1.12 16 4 C -0.08 -1.03 10.04 22.25 0.22 -0.81 16 5 C -0.13 -2.42 9.47 22.38 0.21 -2.21 16 6 C 0.11 2.85 6.69 38.08 0.25 3.10 16 7 N -0.31 -10.53 3.82 -186.90 -0.71 -11.24 16 8 C 0.10 3.34 10.60 83.82 0.89 4.23 16 9 C -0.11 -4.78 6.68 40.82 0.27 -4.51 16 10 C 0.60 26.62 7.61 86.69 0.66 27.28 16 11 O -0.57 -25.08 16.36 -4.02 -0.07 -25.14 16 12 N -0.58 -25.69 2.48 -829.92 -2.05 -27.75 16 13 C 0.21 10.43 3.85 85.63 0.33 10.76 16 14 C -0.51 -29.67 8.94 25.60 0.23 -29.44 16 15 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 16 C 0.03 1.74 5.47 84.66 0.46 2.20 16 17 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 18 Si 0.93 45.78 27.47 68.60 1.88 47.67 16 19 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 20 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 21 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 22 C 0.15 5.42 5.74 86.38 0.50 5.91 16 23 C -0.19 -5.66 6.01 -10.79 -0.06 -5.72 16 24 C -0.17 -4.28 10.18 30.62 0.31 -3.97 16 25 C -0.16 -3.57 10.26 30.62 0.31 -3.25 16 26 N -0.18 -8.60 8.08 -49.98 -0.40 -9.01 16 27 N -0.11 -4.58 13.13 37.02 0.49 -4.10 16 28 C -0.13 -3.30 9.33 22.38 0.21 -3.09 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.15 2.10 6.83 -2.91 -0.02 2.08 16 35 H 0.24 5.56 7.15 -2.91 -0.02 5.54 16 36 H 0.04 1.87 7.08 -2.39 -0.02 1.85 16 37 H 0.06 3.00 4.72 -2.39 -0.01 2.98 16 38 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 39 H 0.08 2.94 8.11 -2.39 -0.02 2.92 16 40 H 0.08 2.94 6.96 -2.38 -0.02 2.92 16 41 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 42 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 43 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.12 3.46 7.74 -2.91 -0.02 3.43 16 Total: -1.00 -80.23 388.47 5.98 -74.25 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.94 Total: 18.81 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.61 Total: -2.73 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -2.39 Total: -112.86 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.07 Total: -25.14 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Total: -80.23 5.98 -74.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.697 kcal (2) G-P(sol) polarization free energy of solvation -80.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds