Wall clock time and date at job start Tue Mar 31 2020 22:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38283 * 119.92739 * 2 1 4 4 C 1.38114 * 120.06910 * 179.97438 * 3 2 1 5 5 C 1.38872 * 119.93200 * 0.02562 * 4 3 2 6 6 N 1.39926 * 120.07246 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00304 * 292.12811 * 6 5 4 8 8 C 1.50707 * 109.46991 * 269.99825 * 7 6 5 9 9 H 1.07998 * 119.99919 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00038 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99932 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00063 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46987 * 90.00323 * 12 10 8 14 14 H 1.48507 * 109.47419 * 209.99850 * 12 10 8 15 15 H 1.48494 * 109.47428 * 330.00294 * 12 10 8 16 16 C 1.34782 * 119.99697 * 112.12821 * 6 5 4 17 17 O 1.21284 * 119.99878 * 355.26322 * 16 6 5 18 18 C 1.50696 * 119.99995 * 175.26822 * 16 6 5 19 19 N 1.46493 * 109.47086 * 179.97438 * 18 16 6 20 20 C 1.35320 * 125.86691 * 125.32611 * 19 18 16 21 21 C 1.35351 * 106.17478 * 180.11760 * 20 19 18 22 22 C 1.50707 * 126.74676 * 179.84985 * 21 20 19 23 23 C 1.52995 * 117.49365 * 84.71760 * 22 21 20 24 24 C 1.53001 * 60.03128 * 252.49750 * 23 22 21 25 25 N 1.33761 * 106.49746 * 359.59371 * 21 20 19 26 26 N 1.28637 * 108.89029 * 0.25885 * 25 21 20 27 27 C 1.38873 * 119.85627 * 0.27520 * 5 4 3 28 28 C 1.38115 * 119.92974 * 359.41978 * 27 5 4 29 29 H 1.09003 * 109.46977 * 89.99784 * 1 2 3 30 30 H 1.09000 * 109.47169 * 209.99505 * 1 2 3 31 31 H 1.09000 * 109.47210 * 329.99662 * 1 2 3 32 32 H 1.08001 * 119.96481 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.03415 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47282 * 29.99662 * 7 6 5 35 35 H 1.08996 * 109.47086 * 150.00108 * 7 6 5 36 36 H 0.96999 * 119.99887 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47035 * 59.99415 * 18 16 6 38 38 H 1.08995 * 109.47014 * 300.00030 * 18 16 6 39 39 H 1.08003 * 126.90954 * 359.96953 * 20 19 18 40 40 H 1.09001 * 115.55658 * 230.40196 * 22 21 20 41 41 H 1.09000 * 117.50181 * 359.97438 * 23 22 21 42 42 H 1.09006 * 117.49923 * 144.99465 * 23 22 21 43 43 H 1.08995 * 117.50098 * 107.50436 * 24 23 22 44 44 H 1.09008 * 117.49436 * 252.52844 * 24 23 22 45 45 H 1.08001 * 120.03475 * 179.73167 * 27 5 4 46 46 H 1.07997 * 119.97054 * 180.29756 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6732 0.0001 0.0005 7 6 6.4057 0.4780 -1.1747 8 6 6.6570 -0.6744 -2.1128 9 1 6.3057 -1.6636 -1.8592 10 6 7.3343 -0.4655 -3.2954 11 7 7.7616 0.7393 -3.6045 12 14 7.6464 -1.8940 -4.4579 13 1 6.5162 -2.0098 -5.4143 14 1 8.9064 -1.6564 -5.2071 15 1 7.7645 -3.1513 -3.6767 16 6 6.3470 -0.4396 1.0818 17 8 5.7437 -0.7542 2.0858 18 6 7.8502 -0.5401 1.0434 19 7 8.3392 -1.0392 2.3310 20 6 9.1360 -2.1178 2.5123 21 6 9.3380 -2.2172 3.8470 22 6 10.1581 -3.2618 4.5594 23 6 11.6640 -3.0185 4.6766 24 6 11.1348 -4.0882 3.7192 25 7 8.6713 -1.2027 4.4087 26 7 8.0901 -0.5234 3.4837 27 6 3.5781 -1.2017 -0.0058 28 6 2.1970 -1.1984 0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6551 2.1327 -0.0004 33 1 4.1163 2.1382 0.0001 34 1 5.8167 1.2401 -1.6849 35 1 7.3581 0.9049 -0.8603 36 1 8.2385 0.8862 -4.4363 37 1 8.2754 0.4448 0.8506 38 1 8.1482 -1.2260 0.2505 39 1 9.5294 -2.7697 1.7463 40 1 9.6626 -3.7614 5.3919 41 1 12.0617 -2.1033 4.2381 42 1 12.1594 -3.3580 5.5864 43 1 11.1843 -3.8765 2.6511 44 1 11.2816 -5.1314 3.9993 45 1 4.1164 -2.1380 -0.0102 46 1 1.6552 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150966543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:26 Heat of formation + Delta-G solvation = 120.374296 kcal Electronic energy + Delta-G solvation = -28871.380099 eV Core-core repulsion = 24957.406238 eV Total energy + Delta-G solvation = -3913.973861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.03576 -40.07841 -38.35400 -37.30812 -35.45338 -34.17046 -32.99618 -31.61193 -30.64077 -30.51817 -28.62709 -27.66770 -25.82081 -23.98310 -23.42381 -22.80244 -22.24154 -22.12832 -21.05524 -20.40518 -19.08757 -17.41819 -17.02109 -16.89052 -16.41894 -15.67091 -15.55163 -15.17464 -15.09555 -14.59382 -14.54382 -14.45964 -14.22886 -13.81701 -13.55127 -13.14230 -12.93794 -12.78825 -12.47927 -12.22782 -12.04746 -11.87189 -11.66915 -11.59843 -11.41211 -11.37295 -11.16773 -11.05281 -10.96273 -10.81445 -10.75793 -10.42658 -10.30184 -10.03925 -10.01016 -9.36799 -8.84547 -8.77836 -8.62267 -8.59279 -7.77707 -6.40086 -4.50056 1.59477 1.75168 1.82969 2.44590 2.71211 2.90756 3.09203 3.17749 3.19114 3.53491 3.72233 4.05110 4.16203 4.29548 4.71220 4.79452 4.85445 4.93290 4.94595 5.01928 5.08812 5.10562 5.23529 5.30306 5.30619 5.45675 5.50728 5.51368 5.67116 5.71236 5.71865 5.82154 5.93662 5.98210 5.98761 6.03885 6.10953 6.32002 6.33706 6.47829 6.64367 6.70074 6.82736 6.85646 6.95087 7.10326 7.44263 7.54319 7.76498 7.88350 8.48434 8.63704 8.80304 9.19458 10.66463 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008029 B = 0.003789 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.552349 B = 7387.252491 C = 9884.403484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.117 4.117 5 C 0.169 3.831 6 N -0.554 5.554 7 C 0.234 3.766 8 C -0.549 4.549 9 H 0.064 0.936 10 C 0.070 3.930 11 N -0.886 5.886 12 Si 0.898 3.102 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.511 3.489 17 O -0.528 6.528 18 C 0.101 3.899 19 N -0.273 5.273 20 C -0.045 4.045 21 C 0.001 3.999 22 C -0.066 4.066 23 C -0.167 4.167 24 C -0.172 4.172 25 N -0.273 5.273 26 N -0.054 5.054 27 C -0.101 4.101 28 C -0.113 4.113 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.268 0.732 37 H 0.130 0.870 38 H 0.149 0.851 39 H 0.188 0.812 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 -4.674 6.502 8.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.136 4.136 5 C 0.078 3.922 6 N -0.283 5.283 7 C 0.116 3.884 8 C -0.587 4.587 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.523 5.523 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.297 3.703 17 O -0.404 6.404 18 C -0.023 4.023 19 N -0.066 5.066 20 C -0.196 4.196 21 C -0.137 4.137 22 C -0.086 4.086 23 C -0.204 4.204 24 C -0.209 4.209 25 N -0.139 5.139 26 N -0.033 5.033 27 C -0.121 4.121 28 C -0.131 4.131 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.166 0.834 39 H 0.205 0.795 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.137 0.863 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.423 -3.554 7.602 8.511 hybrid contribution 0.780 -1.473 -1.867 2.503 sum -0.643 -5.027 5.735 7.653 Atomic orbital electron populations 1.20727 0.91522 1.02328 1.01955 1.19826 0.95782 0.93215 1.01335 1.20784 0.93440 0.97374 1.01515 1.21177 0.94225 0.97411 1.00813 1.17461 0.82841 0.92992 0.98905 1.45791 1.03679 1.62205 1.16579 1.19683 0.91782 0.95985 0.80986 1.21414 1.37798 0.95114 1.04358 0.91821 1.24927 0.94934 0.96049 0.97524 1.69907 1.37199 1.20638 1.24557 0.86492 0.77992 0.82136 0.80907 1.20296 1.20873 1.19673 1.20068 0.88789 0.78166 0.83245 1.90775 1.69453 1.48916 1.31249 1.22053 0.94411 1.05038 0.80808 1.46909 1.31951 1.19568 1.08185 1.23261 1.02025 0.95072 0.99210 1.20909 1.03640 0.98655 0.90508 1.19947 0.90030 0.97400 1.01231 1.22988 0.95154 1.00693 1.01611 1.23032 1.02972 0.96950 0.97983 1.75025 1.09808 1.05319 1.23779 1.78410 1.17896 1.20646 0.86382 1.21176 0.94090 0.97517 0.99291 1.20809 0.93522 0.97389 1.01426 0.91475 0.91892 0.91854 0.86118 0.85901 0.93645 0.94086 0.92175 0.85225 0.83361 0.79528 0.86275 0.88694 0.88311 0.88463 0.88119 0.86347 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.00 0.36 -0.81 16 2 C -0.10 -1.47 5.88 -104.59 -0.62 -2.09 16 3 C -0.11 -1.70 9.69 -39.61 -0.38 -2.09 16 4 C -0.12 -2.05 9.69 -39.39 -0.38 -2.43 16 5 C 0.17 3.30 4.74 -83.69 -0.40 2.91 16 6 N -0.55 -11.10 2.50 -114.74 -0.29 -11.39 16 7 C 0.23 5.03 4.88 -5.19 -0.03 5.00 16 8 C -0.55 -12.86 9.16 -34.44 -0.32 -13.18 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -22.49 13.29 55.43 0.74 -21.76 16 12 Si 0.90 18.98 29.54 -169.99 -5.02 13.96 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 C 0.51 10.16 7.54 -10.98 -0.08 10.08 16 17 O -0.53 -12.06 15.44 5.55 0.09 -11.97 16 18 C 0.10 1.68 5.60 -5.20 -0.03 1.65 16 19 N -0.27 -4.74 3.20 -62.45 -0.20 -4.94 16 20 C -0.05 -0.67 10.89 -17.04 -0.19 -0.85 16 21 C 0.00 0.01 6.88 -82.78 -0.57 -0.56 16 22 C -0.07 -0.77 6.33 -91.73 -0.58 -1.35 16 23 C -0.17 -1.59 10.23 -26.73 -0.27 -1.87 16 24 C -0.17 -1.52 10.03 -26.69 -0.27 -1.79 16 25 N -0.27 -5.17 12.41 33.29 0.41 -4.76 16 26 N -0.05 -1.07 12.13 60.35 0.73 -0.34 16 27 C -0.10 -1.87 9.56 -39.39 -0.38 -2.25 16 28 C -0.11 -1.77 9.69 -39.61 -0.38 -2.16 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.05 1.06 7.86 -51.93 -0.41 0.65 16 35 H 0.04 0.86 6.47 -51.93 -0.34 0.53 16 36 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 37 H 0.13 1.97 7.26 -51.93 -0.38 1.59 16 38 H 0.15 2.25 7.84 -51.93 -0.41 1.84 16 39 H 0.19 2.05 7.45 -52.48 -0.39 1.66 16 40 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.82 7.23 -51.93 -0.38 0.44 16 44 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 46 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 395.45 15.07 5.96 5.96 Total: -1.00 -30.84 395.45 -8.67 -39.51 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.48 Total: 5.92 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -4.61 Total: -10.17 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 1.39 Total: -43.19 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.84 -8.67 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150966543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.883 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds