Wall clock time and date at job start Tue Mar 31 2020 22:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38283 * 119.92739 * 2 1 4 4 C 1.38114 * 120.06910 * 179.97438 * 3 2 1 5 5 C 1.38872 * 119.93200 * 0.02562 * 4 3 2 6 6 N 1.39926 * 120.07246 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00304 * 292.12811 * 6 5 4 8 8 C 1.50707 * 109.46991 * 269.99825 * 7 6 5 9 9 H 1.07998 * 119.99919 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00038 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99932 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00063 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46987 * 90.00323 * 12 10 8 14 14 H 1.48507 * 109.47419 * 209.99850 * 12 10 8 15 15 H 1.48494 * 109.47428 * 330.00294 * 12 10 8 16 16 C 1.34782 * 119.99697 * 112.12821 * 6 5 4 17 17 O 1.21284 * 119.99878 * 355.26322 * 16 6 5 18 18 C 1.50696 * 119.99995 * 175.26822 * 16 6 5 19 19 N 1.46493 * 109.47086 * 179.97438 * 18 16 6 20 20 C 1.35320 * 125.86691 * 125.32611 * 19 18 16 21 21 C 1.35351 * 106.17478 * 180.11760 * 20 19 18 22 22 C 1.50707 * 126.74676 * 179.84985 * 21 20 19 23 23 C 1.52995 * 117.49365 * 84.71760 * 22 21 20 24 24 C 1.53001 * 60.03128 * 252.49750 * 23 22 21 25 25 N 1.33761 * 106.49746 * 359.59371 * 21 20 19 26 26 N 1.28637 * 108.89029 * 0.25885 * 25 21 20 27 27 C 1.38873 * 119.85627 * 0.27520 * 5 4 3 28 28 C 1.38115 * 119.92974 * 359.41978 * 27 5 4 29 29 H 1.09003 * 109.46977 * 89.99784 * 1 2 3 30 30 H 1.09000 * 109.47169 * 209.99505 * 1 2 3 31 31 H 1.09000 * 109.47210 * 329.99662 * 1 2 3 32 32 H 1.08001 * 119.96481 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.03415 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47282 * 29.99662 * 7 6 5 35 35 H 1.08996 * 109.47086 * 150.00108 * 7 6 5 36 36 H 0.96999 * 119.99887 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47035 * 59.99415 * 18 16 6 38 38 H 1.08995 * 109.47014 * 300.00030 * 18 16 6 39 39 H 1.08003 * 126.90954 * 359.96953 * 20 19 18 40 40 H 1.09001 * 115.55658 * 230.40196 * 22 21 20 41 41 H 1.09000 * 117.50181 * 359.97438 * 23 22 21 42 42 H 1.09006 * 117.49923 * 144.99465 * 23 22 21 43 43 H 1.08995 * 117.50098 * 107.50436 * 24 23 22 44 44 H 1.09008 * 117.49436 * 252.52844 * 24 23 22 45 45 H 1.08001 * 120.03475 * 179.73167 * 27 5 4 46 46 H 1.07997 * 119.97054 * 180.29756 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6732 0.0001 0.0005 7 6 6.4057 0.4780 -1.1747 8 6 6.6570 -0.6744 -2.1128 9 1 6.3057 -1.6636 -1.8592 10 6 7.3343 -0.4655 -3.2954 11 7 7.7616 0.7393 -3.6045 12 14 7.6464 -1.8940 -4.4579 13 1 6.5162 -2.0098 -5.4143 14 1 8.9064 -1.6564 -5.2071 15 1 7.7645 -3.1513 -3.6767 16 6 6.3470 -0.4396 1.0818 17 8 5.7437 -0.7542 2.0858 18 6 7.8502 -0.5401 1.0434 19 7 8.3392 -1.0392 2.3310 20 6 9.1360 -2.1178 2.5123 21 6 9.3380 -2.2172 3.8470 22 6 10.1581 -3.2618 4.5594 23 6 11.6640 -3.0185 4.6766 24 6 11.1348 -4.0882 3.7192 25 7 8.6713 -1.2027 4.4087 26 7 8.0901 -0.5234 3.4837 27 6 3.5781 -1.2017 -0.0058 28 6 2.1970 -1.1984 0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6551 2.1327 -0.0004 33 1 4.1163 2.1382 0.0001 34 1 5.8167 1.2401 -1.6849 35 1 7.3581 0.9049 -0.8603 36 1 8.2385 0.8862 -4.4363 37 1 8.2754 0.4448 0.8506 38 1 8.1482 -1.2260 0.2505 39 1 9.5294 -2.7697 1.7463 40 1 9.6626 -3.7614 5.3919 41 1 12.0617 -2.1033 4.2381 42 1 12.1594 -3.3580 5.5864 43 1 11.1843 -3.8765 2.6511 44 1 11.2816 -5.1314 3.9993 45 1 4.1164 -2.1380 -0.0102 46 1 1.6552 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150966543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:25 Heat of formation + Delta-G solvation = 104.607081 kcal Electronic energy + Delta-G solvation = -28872.063817 eV Core-core repulsion = 24957.406238 eV Total energy + Delta-G solvation = -3914.657579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.32504 -41.55903 -39.70436 -38.15623 -37.03242 -35.51908 -34.74251 -32.91362 -31.92849 -31.72121 -29.93581 -29.38850 -27.04545 -25.15444 -25.03064 -23.91099 -23.59125 -23.10620 -22.27986 -21.52683 -20.45544 -18.89057 -18.66910 -18.35337 -17.83228 -17.05438 -16.75802 -16.43261 -16.40249 -16.18802 -15.73686 -15.69754 -15.30354 -15.08591 -14.55182 -14.47857 -14.42421 -14.33732 -13.88489 -13.58718 -13.27849 -13.12250 -12.98318 -12.82959 -12.65474 -12.58281 -12.49108 -12.29796 -12.15595 -12.12720 -12.08479 -11.84091 -11.74783 -11.39842 -11.16565 -10.88319 -10.62545 -10.12038 -9.99987 -9.89848 -9.20150 -8.25050 -6.40776 0.28422 0.44631 0.56013 1.17012 1.36076 1.41656 1.46796 1.47162 1.53746 2.05761 2.39000 2.76093 2.89597 3.06502 3.21014 3.39972 3.71085 3.88780 3.91681 3.97378 4.00174 4.01882 4.04407 4.04898 4.29778 4.39648 4.43588 4.47762 4.51467 4.77205 4.80008 4.85208 4.86277 4.89420 4.98611 5.04822 5.11322 5.17525 5.20118 5.24160 5.31921 5.36232 5.43241 5.52411 5.64211 5.64989 5.71760 5.95163 6.08639 6.28989 6.68657 7.01875 7.32199 7.48899 8.80667 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008029 B = 0.003789 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.552349 B = 7387.252491 C = 9884.403484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C -0.112 4.112 4 C -0.135 4.135 5 C 0.129 3.871 6 N -0.551 5.551 7 C 0.248 3.752 8 C -0.550 4.550 9 H 0.057 0.943 10 C 0.031 3.969 11 N -0.915 5.915 12 Si 0.954 3.046 13 H -0.283 1.283 14 H -0.279 1.279 15 H -0.264 1.264 16 C 0.508 3.492 17 O -0.562 6.562 18 C 0.108 3.892 19 N -0.277 5.277 20 C -0.039 4.039 21 C -0.002 4.002 22 C -0.093 4.093 23 C -0.162 4.162 24 C -0.150 4.150 25 N -0.303 5.303 26 N -0.101 5.101 27 C -0.124 4.124 28 C -0.116 4.116 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.024 0.976 35 H 0.045 0.955 36 H 0.270 0.730 37 H 0.142 0.858 38 H 0.166 0.834 39 H 0.226 0.774 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.105 0.895 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -6.278 5.855 8.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.130 4.130 4 C -0.154 4.154 5 C 0.038 3.962 6 N -0.279 5.279 7 C 0.129 3.871 8 C -0.588 4.588 9 H 0.075 0.925 10 C -0.170 4.170 11 N -0.553 5.553 12 Si 0.779 3.221 13 H -0.209 1.209 14 H -0.205 1.205 15 H -0.188 1.188 16 C 0.296 3.704 17 O -0.441 6.441 18 C -0.016 4.016 19 N -0.070 5.070 20 C -0.190 4.190 21 C -0.141 4.141 22 C -0.113 4.113 23 C -0.199 4.199 24 C -0.187 4.187 25 N -0.169 5.169 26 N -0.080 5.080 27 C -0.143 4.143 28 C -0.135 4.135 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.141 0.859 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.243 0.757 40 H 0.139 0.861 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.141 0.859 45 H 0.123 0.877 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.698 -5.148 6.964 8.825 hybrid contribution 0.780 -0.980 -1.640 2.064 sum -0.918 -6.128 5.324 8.170 Atomic orbital electron populations 1.20807 0.88215 1.03894 1.03320 1.20336 0.98109 0.92325 0.98900 1.21198 0.92513 0.99223 1.00066 1.21369 0.95650 0.96798 1.01604 1.17836 0.82726 0.94235 1.01371 1.45731 1.04239 1.61856 1.16043 1.19392 0.91570 0.94952 0.81198 1.21548 1.37292 0.95182 1.04757 0.92458 1.25557 0.94796 0.97934 0.98752 1.69992 1.38045 1.22185 1.25084 0.85615 0.77573 0.79900 0.79005 1.20863 1.20472 1.18804 1.20547 0.90025 0.77320 0.82533 1.90743 1.70516 1.50558 1.32303 1.22075 0.92143 1.06244 0.81153 1.46986 1.32162 1.20204 1.07678 1.23958 1.00674 0.94275 1.00090 1.21585 1.03075 0.98336 0.91063 1.20089 0.90785 0.97914 1.02559 1.23062 0.93235 1.00869 1.02782 1.23185 0.99685 0.97748 0.98066 1.74959 1.10776 1.06715 1.24436 1.78371 1.19906 1.22319 0.87385 1.21250 0.95545 0.96650 1.00891 1.21165 0.92510 0.99294 1.00494 0.90004 0.90544 0.90188 0.82967 0.85948 0.95824 0.93681 0.92107 0.84069 0.81669 0.75713 0.86051 0.89627 0.86453 0.87759 0.85856 0.87692 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.01 71.24 0.71 -1.19 16 2 C -0.10 -2.62 5.88 -19.84 -0.12 -2.73 16 3 C -0.11 -3.24 9.69 22.25 0.22 -3.03 16 4 C -0.13 -4.84 9.69 22.39 0.22 -4.62 16 5 C 0.13 5.21 4.74 38.15 0.18 5.40 16 6 N -0.55 -22.94 2.50 -635.31 -1.59 -24.53 16 7 C 0.25 10.97 4.88 85.64 0.42 11.38 16 8 C -0.55 -25.95 9.16 25.60 0.23 -25.72 16 9 H 0.06 2.75 7.81 -2.91 -0.02 2.72 16 10 C 0.03 1.50 5.46 84.65 0.46 1.96 16 11 N -0.91 -46.55 13.29 21.45 0.28 -46.26 16 12 Si 0.95 38.37 29.54 68.60 2.03 40.40 16 13 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 16 C 0.51 20.95 7.54 87.65 0.66 21.61 16 17 O -0.56 -26.87 15.44 -3.04 -0.05 -26.91 16 18 C 0.11 3.63 5.60 85.63 0.48 4.11 16 19 N -0.28 -9.74 3.20 -351.49 -1.12 -10.87 16 20 C -0.04 -1.13 10.89 83.49 0.91 -0.22 16 21 C 0.00 -0.07 6.88 41.60 0.29 0.22 16 22 C -0.09 -2.05 6.33 -11.52 -0.07 -2.12 16 23 C -0.16 -2.77 10.23 30.59 0.31 -2.46 16 24 C -0.15 -2.20 10.03 30.62 0.31 -1.89 16 25 N -0.30 -11.84 12.41 -48.60 -0.60 -12.44 16 26 N -0.10 -4.19 12.13 37.02 0.45 -3.74 16 27 C -0.12 -4.71 9.56 22.39 0.21 -4.49 16 28 C -0.12 -3.56 9.69 22.25 0.22 -3.34 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 31 H 0.08 1.20 8.08 -2.39 -0.02 1.19 16 32 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 33 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.02 1.15 7.86 -2.39 -0.02 1.13 16 35 H 0.05 1.94 6.47 -2.39 -0.02 1.93 16 36 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 37 H 0.14 4.37 7.26 -2.39 -0.02 4.35 16 38 H 0.17 4.93 7.84 -2.39 -0.02 4.91 16 39 H 0.23 4.35 7.45 -2.91 -0.02 4.33 16 40 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.10 1.40 7.23 -2.39 -0.02 1.38 16 44 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 46 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -69.33 395.45 6.02 -63.31 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.99 Total: 28.19 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.64 Total: -7.13 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -2.58 Total: -97.85 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.91 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -69.33 6.02 -63.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150966543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.916 kcal (2) G-P(sol) polarization free energy of solvation -69.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds