Wall clock time and date at job start Tue Mar 31 2020 23:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38289 * 126.32078 * 2 1 4 4 C 1.46968 * 126.43757 * 0.02562 * 3 2 1 5 5 C 1.35044 * 119.99557 * 179.70998 * 4 3 2 6 6 C 1.41833 * 119.99693 * 179.97438 * 5 4 3 7 7 O 1.21743 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99940 * 179.72985 * 6 5 4 9 9 C 1.46496 * 119.99875 * 0.27183 * 8 6 5 10 10 C 1.50703 * 109.47067 * 90.00619 * 9 8 6 11 11 H 1.08005 * 119.99711 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00208 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99511 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46837 * 89.99940 * 14 12 10 16 16 H 1.48492 * 109.46987 * 209.99702 * 14 12 10 17 17 H 1.48497 * 109.47110 * 330.00327 * 14 12 10 18 18 C 1.46504 * 119.99854 * 180.27927 * 8 6 5 19 19 C 1.50695 * 109.47163 * 89.99960 * 18 8 6 20 20 C 1.38683 * 120.41625 * 269.71882 * 19 18 8 21 21 C 1.38623 * 118.42040 * 179.78428 * 20 19 18 22 22 C 1.38226 * 119.16255 * 0.51263 * 21 20 19 23 23 N 1.31862 * 120.76289 * 359.72473 * 22 21 20 24 24 C 1.31888 * 121.72242 * 0.02562 * 23 22 21 25 25 C 1.41433 * 107.11968 * 179.74041 * 3 2 1 26 26 N 1.30450 * 108.03570 * 0.26276 * 25 3 2 27 27 N 1.34398 * 126.31880 * 180.19846 * 2 1 3 28 28 C 1.46503 * 125.74089 * 359.94881 * 27 2 1 29 29 H 1.08997 * 109.46805 * 89.99529 * 1 2 3 30 30 H 1.09000 * 109.47046 * 209.99893 * 1 2 3 31 31 H 1.09005 * 109.46810 * 329.99564 * 1 2 3 32 32 H 1.08001 * 119.99889 * 359.70947 * 4 3 2 33 33 H 1.08001 * 120.00551 * 0.02562 * 5 4 3 34 34 H 1.08997 * 109.47346 * 210.00204 * 9 8 6 35 35 H 1.09004 * 109.47612 * 330.00302 * 9 8 6 36 36 H 0.97009 * 119.99538 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.46626 * 210.00015 * 18 8 6 38 38 H 1.08996 * 109.47068 * 329.99428 * 18 8 6 39 39 H 1.08006 * 120.78659 * 0.02562 * 20 19 18 40 40 H 1.08000 * 120.41749 * 180.21904 * 21 20 19 41 41 H 1.07996 * 119.62209 * 179.74428 * 22 21 20 42 42 H 1.08001 * 119.61449 * 179.97438 * 24 23 22 43 43 H 1.07993 * 125.98399 * 180.26567 * 25 3 2 44 44 H 1.08996 * 109.47346 * 270.34043 * 28 27 2 45 45 H 1.08999 * 109.46912 * 30.34557 * 28 27 2 46 46 H 1.09007 * 109.47019 * 150.33627 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1142 0.0000 4 6 1.8905 2.5179 0.0005 5 6 2.8074 3.5093 0.0064 6 6 2.3870 4.8639 0.0063 7 8 1.1997 5.1328 0.0015 8 7 3.3020 5.8534 0.0177 9 6 4.7308 5.5298 0.0240 10 6 5.2290 5.4277 -1.3946 11 1 4.5491 5.5874 -2.2185 12 6 6.5524 5.1293 -1.6407 13 7 7.3798 4.9333 -0.6374 14 14 7.1697 5.0019 -3.3992 15 1 7.6430 6.3336 -3.8552 16 1 8.2910 4.0303 -3.4610 17 1 6.0660 4.5409 -4.2791 18 6 2.8677 7.2526 0.0238 19 6 2.7107 7.7236 1.4467 20 6 1.4937 7.5939 2.0989 21 6 1.3967 8.0368 3.4089 22 6 2.5053 8.5989 4.0137 23 7 3.6456 8.7107 3.3610 24 6 3.7756 8.2958 2.1158 25 6 3.6617 0.6491 0.0061 26 7 3.6352 -0.6552 0.0038 27 7 2.3030 -1.0829 -0.0038 28 6 1.8517 -2.4767 -0.0075 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 0.8371 2.7563 -0.0038 33 1 3.8607 3.2708 0.0103 34 1 5.2787 6.3144 0.5459 35 1 4.8857 4.5784 0.5330 36 1 8.3110 4.7237 -0.8106 37 1 3.6130 7.8665 -0.4820 38 1 1.9131 7.3390 -0.4950 39 1 0.6428 7.1545 1.5994 40 1 0.4654 7.9482 3.9485 41 1 2.4369 8.9502 5.0326 42 1 4.7254 8.4045 1.6134 43 1 4.5483 1.2656 0.0118 44 1 1.7348 -2.8235 1.0191 45 1 0.8957 -2.5476 -0.5262 46 1 2.5891 -3.0959 -0.5185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161359420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:21 Heat of formation + Delta-G solvation = 93.890922 kcal Electronic energy + Delta-G solvation = -28672.939033 eV Core-core repulsion = 24757.816766 eV Total energy + Delta-G solvation = -3915.122266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15647 -40.01559 -38.95217 -35.27236 -34.19546 -33.20443 -32.89791 -32.08148 -31.42305 -30.84302 -27.59985 -27.16437 -26.80153 -25.69327 -23.42329 -23.15690 -22.64396 -21.62697 -20.36120 -19.27059 -17.79269 -16.92972 -16.71535 -16.49132 -16.22593 -15.73525 -15.72893 -15.39421 -15.04169 -14.50627 -14.28055 -14.02364 -13.76162 -13.50979 -13.43640 -13.15858 -12.93811 -12.81658 -12.68677 -12.62695 -12.56479 -12.32781 -11.97213 -11.77671 -11.70740 -11.36600 -11.08821 -10.94840 -10.66368 -10.41745 -10.14034 -9.97381 -9.77114 -9.54309 -9.28430 -9.19614 -9.16878 -8.69967 -8.51277 -7.84106 -7.48172 -6.15609 -4.22999 1.27592 1.36990 1.58235 2.11377 2.44594 3.19708 3.25323 3.33124 3.36777 3.90049 4.19203 4.32166 4.37492 4.45722 4.52763 4.72702 4.85819 4.91709 5.07830 5.11208 5.17461 5.20427 5.23847 5.29384 5.30139 5.36947 5.38300 5.55758 5.63017 5.69434 5.86632 5.94082 5.95193 6.09415 6.20030 6.28389 6.40949 6.64282 6.67976 6.73793 6.82934 6.92768 6.99485 7.06349 7.24411 7.55722 7.75455 7.79139 8.07610 8.24046 8.34463 8.82451 9.05192 9.44992 10.90749 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007352 B = 0.003959 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.357784 B = 7070.583795 C = 9921.841676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.098 3.902 3 C -0.217 4.217 4 C 0.003 3.997 5 C -0.204 4.204 6 C 0.554 3.446 7 O -0.586 6.586 8 N -0.587 5.587 9 C 0.237 3.763 10 C -0.536 4.536 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.890 5.890 14 Si 0.894 3.106 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.161 3.839 19 C -0.143 4.143 20 C -0.056 4.056 21 C -0.182 4.182 22 C 0.088 3.912 23 N -0.490 5.490 24 C 0.114 3.886 25 C 0.082 3.918 26 N -0.304 5.304 27 N -0.371 5.371 28 C 0.100 3.900 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.265 0.735 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.194 0.806 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 -6.860 4.364 15.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.032 4.032 3 C -0.228 4.228 4 C -0.018 4.018 5 C -0.226 4.226 6 C 0.347 3.653 7 O -0.471 6.471 8 N -0.315 5.315 9 C 0.118 3.882 10 C -0.575 4.575 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.528 5.528 14 Si 0.722 3.278 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 C 0.036 3.964 19 C -0.146 4.146 20 C -0.082 4.082 21 C -0.202 4.202 22 C -0.069 4.069 23 N -0.198 5.198 24 C -0.043 4.043 25 C -0.105 4.105 26 N -0.123 5.123 27 N -0.152 5.152 28 C -0.041 4.041 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.166 0.834 42 H 0.175 0.825 43 H 0.211 0.789 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.509 -7.635 4.816 15.426 hybrid contribution -0.444 0.133 -1.359 1.436 sum -12.953 -7.502 3.457 15.363 Atomic orbital electron populations 1.20492 0.86959 1.04067 1.03580 1.21577 0.94365 0.87098 1.00139 1.19240 0.92060 0.92977 1.18561 1.21426 0.99121 0.88603 0.92672 1.22084 1.01558 0.92496 1.06414 1.17066 0.85243 0.86547 0.76394 1.90663 1.17070 1.85492 1.53827 1.48152 1.09222 1.03954 1.70210 1.19487 0.73703 0.97479 0.97547 1.21492 0.94660 1.49094 0.92245 0.92030 1.24912 0.96583 0.94852 0.97281 1.69924 1.04944 1.47314 1.30623 0.86551 0.78570 0.77993 0.84728 1.20549 1.21101 1.19786 1.20108 1.01865 0.83687 0.90701 1.21455 0.94476 0.99423 0.99283 1.21667 0.97890 0.94631 0.94035 1.22094 1.00300 1.01630 0.96181 1.22679 0.88554 0.96104 0.99572 1.67703 1.25761 1.17298 1.09046 1.22810 0.98422 0.93031 0.90056 1.24304 0.98174 0.91423 0.96595 1.77169 0.95621 1.13790 1.25752 1.48238 1.04266 1.05915 1.56759 1.21833 1.00957 0.78066 1.03275 0.89861 0.91103 0.89086 0.85636 0.84479 0.94627 0.94163 0.92511 0.89165 0.89814 0.84431 0.85343 0.83377 0.82518 0.78935 0.90790 0.89616 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.70 36.01 0.35 -0.42 16 2 C 0.10 1.24 7.02 -81.45 -0.57 0.67 16 3 C -0.22 -3.37 6.08 -105.13 -0.64 -4.01 16 4 C 0.00 0.05 9.33 -37.18 -0.35 -0.29 16 5 C -0.20 -3.92 8.60 -39.34 -0.34 -4.26 16 6 C 0.55 11.46 7.45 -14.89 -0.11 11.35 16 7 O -0.59 -12.46 15.33 5.15 0.08 -12.38 16 8 N -0.59 -12.10 2.44 -179.79 -0.44 -12.53 16 9 C 0.24 5.50 4.85 -5.19 -0.03 5.48 16 10 C -0.54 -13.61 9.39 -34.44 -0.32 -13.93 16 11 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 12 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 14 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.16 2.89 5.56 -5.19 -0.03 2.86 16 19 C -0.14 -2.41 5.48 -104.48 -0.57 -2.98 16 20 C -0.06 -0.87 9.86 -39.27 -0.39 -1.25 16 21 C -0.18 -2.45 10.11 -39.44 -0.40 -2.85 16 22 C 0.09 1.24 11.18 -17.54 -0.20 1.04 16 23 N -0.49 -8.18 10.36 -13.25 -0.14 -8.32 16 24 C 0.11 1.94 10.86 -17.55 -0.19 1.75 16 25 C 0.08 1.34 11.39 -16.92 -0.19 1.15 16 26 N -0.30 -4.87 12.49 30.89 0.39 -4.49 16 27 N -0.37 -4.75 3.98 -63.24 -0.25 -5.00 16 28 C 0.10 0.76 11.06 59.85 0.66 1.42 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.42 7.72 -51.93 -0.40 0.02 16 31 H 0.09 0.75 7.61 -51.93 -0.40 0.36 16 32 H 0.13 1.97 7.02 -52.49 -0.37 1.60 16 33 H 0.14 2.77 4.96 -52.49 -0.26 2.51 16 34 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.04 0.98 6.08 -51.93 -0.32 0.66 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.09 1.57 8.02 -51.93 -0.42 1.15 16 38 H 0.08 1.48 7.37 -51.93 -0.38 1.09 16 39 H 0.14 2.14 7.70 -52.48 -0.40 1.73 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.16 2.60 8.06 -52.49 -0.42 2.18 16 43 H 0.19 3.11 7.31 -52.49 -0.38 2.73 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.42 7.64 -51.93 -0.40 0.02 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -32.22 396.37 -8.31 -40.53 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.23 Total: 6.81 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.41 Total: -2.66 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.29 Total: -53.74 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.22 -8.31 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161359420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.425 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds