Wall clock time and date at job start Tue Mar 31 2020 23:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38289 * 126.32078 * 2 1 4 4 C 1.46968 * 126.43757 * 0.02562 * 3 2 1 5 5 C 1.35044 * 119.99557 * 179.70998 * 4 3 2 6 6 C 1.41833 * 119.99693 * 179.97438 * 5 4 3 7 7 O 1.21743 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99940 * 179.72985 * 6 5 4 9 9 C 1.46496 * 119.99875 * 0.27183 * 8 6 5 10 10 C 1.50703 * 109.47067 * 90.00619 * 9 8 6 11 11 H 1.08005 * 119.99711 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00208 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99511 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46837 * 89.99940 * 14 12 10 16 16 H 1.48492 * 109.46987 * 209.99702 * 14 12 10 17 17 H 1.48497 * 109.47110 * 330.00327 * 14 12 10 18 18 C 1.46504 * 119.99854 * 180.27927 * 8 6 5 19 19 C 1.50695 * 109.47163 * 89.99960 * 18 8 6 20 20 C 1.38683 * 120.41625 * 269.71882 * 19 18 8 21 21 C 1.38623 * 118.42040 * 179.78428 * 20 19 18 22 22 C 1.38226 * 119.16255 * 0.51263 * 21 20 19 23 23 N 1.31862 * 120.76289 * 359.72473 * 22 21 20 24 24 C 1.31888 * 121.72242 * 0.02562 * 23 22 21 25 25 C 1.41433 * 107.11968 * 179.74041 * 3 2 1 26 26 N 1.30450 * 108.03570 * 0.26276 * 25 3 2 27 27 N 1.34398 * 126.31880 * 180.19846 * 2 1 3 28 28 C 1.46503 * 125.74089 * 359.94881 * 27 2 1 29 29 H 1.08997 * 109.46805 * 89.99529 * 1 2 3 30 30 H 1.09000 * 109.47046 * 209.99893 * 1 2 3 31 31 H 1.09005 * 109.46810 * 329.99564 * 1 2 3 32 32 H 1.08001 * 119.99889 * 359.70947 * 4 3 2 33 33 H 1.08001 * 120.00551 * 0.02562 * 5 4 3 34 34 H 1.08997 * 109.47346 * 210.00204 * 9 8 6 35 35 H 1.09004 * 109.47612 * 330.00302 * 9 8 6 36 36 H 0.97009 * 119.99538 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.46626 * 210.00015 * 18 8 6 38 38 H 1.08996 * 109.47068 * 329.99428 * 18 8 6 39 39 H 1.08006 * 120.78659 * 0.02562 * 20 19 18 40 40 H 1.08000 * 120.41749 * 180.21904 * 21 20 19 41 41 H 1.07996 * 119.62209 * 179.74428 * 22 21 20 42 42 H 1.08001 * 119.61449 * 179.97438 * 24 23 22 43 43 H 1.07993 * 125.98399 * 180.26567 * 25 3 2 44 44 H 1.08996 * 109.47346 * 270.34043 * 28 27 2 45 45 H 1.08999 * 109.46912 * 30.34557 * 28 27 2 46 46 H 1.09007 * 109.47019 * 150.33627 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1142 0.0000 4 6 1.8905 2.5179 0.0005 5 6 2.8074 3.5093 0.0064 6 6 2.3870 4.8639 0.0063 7 8 1.1997 5.1328 0.0015 8 7 3.3020 5.8534 0.0177 9 6 4.7308 5.5298 0.0240 10 6 5.2290 5.4277 -1.3946 11 1 4.5491 5.5874 -2.2185 12 6 6.5524 5.1293 -1.6407 13 7 7.3798 4.9333 -0.6374 14 14 7.1697 5.0019 -3.3992 15 1 7.6430 6.3336 -3.8552 16 1 8.2910 4.0303 -3.4610 17 1 6.0660 4.5409 -4.2791 18 6 2.8677 7.2526 0.0238 19 6 2.7107 7.7236 1.4467 20 6 1.4937 7.5939 2.0989 21 6 1.3967 8.0368 3.4089 22 6 2.5053 8.5989 4.0137 23 7 3.6456 8.7107 3.3610 24 6 3.7756 8.2958 2.1158 25 6 3.6617 0.6491 0.0061 26 7 3.6352 -0.6552 0.0038 27 7 2.3030 -1.0829 -0.0038 28 6 1.8517 -2.4767 -0.0075 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 0.8371 2.7563 -0.0038 33 1 3.8607 3.2708 0.0103 34 1 5.2787 6.3144 0.5459 35 1 4.8857 4.5784 0.5330 36 1 8.3110 4.7237 -0.8106 37 1 3.6130 7.8665 -0.4820 38 1 1.9131 7.3390 -0.4950 39 1 0.6428 7.1545 1.5994 40 1 0.4654 7.9482 3.9485 41 1 2.4369 8.9502 5.0326 42 1 4.7254 8.4045 1.6134 43 1 4.5483 1.2656 0.0118 44 1 1.7348 -2.8235 1.0191 45 1 0.8957 -2.5476 -0.5262 46 1 2.5891 -3.0959 -0.5185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161359420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:20 Heat of formation + Delta-G solvation = 75.497910 kcal Electronic energy + Delta-G solvation = -28673.736614 eV Core-core repulsion = 24757.816766 eV Total energy + Delta-G solvation = -3915.919847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.26233 -41.34425 -40.41953 -36.88450 -35.43829 -34.75510 -34.15288 -33.53542 -32.63491 -31.92785 -29.32705 -28.43971 -27.66144 -26.98178 -25.07850 -24.42044 -24.14113 -22.88249 -21.53176 -20.41422 -19.32487 -18.57814 -18.25302 -17.84987 -17.47460 -17.02392 -16.82636 -16.66369 -16.45194 -16.29095 -15.40329 -15.33474 -15.06764 -14.73040 -14.34818 -14.30559 -14.22984 -14.02286 -14.00220 -13.87404 -13.50034 -13.42990 -13.32961 -13.17483 -12.89900 -12.84141 -12.73996 -12.60653 -12.38076 -11.99610 -11.70143 -11.58192 -11.25307 -10.92204 -10.69213 -10.50549 -10.43009 -10.32641 -9.93829 -9.46532 -8.79338 -8.16895 -6.31224 0.01017 0.16447 0.36555 0.91886 1.41241 1.43494 1.52734 1.54562 1.88611 2.35631 2.51770 2.74067 3.00781 3.13147 3.49290 3.57012 3.65843 3.87493 3.92945 4.01828 4.09510 4.12956 4.14043 4.25303 4.38375 4.40183 4.50730 4.59507 4.66393 4.70999 4.73137 4.77114 4.79929 4.88706 4.93217 4.98576 5.06011 5.22123 5.24926 5.36368 5.44141 5.50621 5.66105 5.70666 5.80805 5.90732 6.04255 6.09378 6.60050 6.61063 6.85915 7.03554 7.35998 7.47447 8.88091 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007352 B = 0.003959 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.357784 B = 7070.583795 C = 9921.841676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.127 3.873 3 C -0.261 4.261 4 C 0.048 3.952 5 C -0.252 4.252 6 C 0.554 3.446 7 O -0.597 6.597 8 N -0.593 5.593 9 C 0.257 3.743 10 C -0.540 4.540 11 H 0.053 0.947 12 C 0.024 3.976 13 N -0.919 5.919 14 Si 0.952 3.048 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.162 3.838 19 C -0.154 4.154 20 C -0.064 4.064 21 C -0.169 4.169 22 C 0.088 3.912 23 N -0.511 5.511 24 C 0.098 3.902 25 C 0.066 3.934 26 N -0.334 5.334 27 N -0.365 5.365 28 C 0.085 3.915 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.020 0.980 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.168 0.832 41 H 0.186 0.814 42 H 0.147 0.853 43 H 0.178 0.822 44 H 0.093 0.907 45 H 0.122 0.878 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.598 -8.499 4.784 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.005 4.005 3 C -0.272 4.272 4 C 0.027 3.973 5 C -0.274 4.274 6 C 0.348 3.652 7 O -0.483 6.483 8 N -0.321 5.321 9 C 0.136 3.864 10 C -0.579 4.579 11 H 0.071 0.929 12 C -0.176 4.176 13 N -0.558 5.558 14 Si 0.778 3.222 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.198 1.198 18 C 0.039 3.961 19 C -0.158 4.158 20 C -0.090 4.090 21 C -0.188 4.188 22 C -0.070 4.070 23 N -0.220 5.220 24 C -0.058 4.058 25 C -0.120 4.120 26 N -0.154 5.154 27 N -0.145 5.145 28 C -0.054 4.054 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.155 0.845 40 H 0.185 0.815 41 H 0.203 0.797 42 H 0.165 0.835 43 H 0.195 0.805 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.551 -9.286 5.229 18.852 hybrid contribution 0.342 0.421 -1.408 1.509 sum -15.209 -8.865 3.821 18.014 Atomic orbital electron populations 1.20758 0.83136 1.05993 1.05359 1.22247 0.96306 0.85936 0.96015 1.19320 0.92323 0.93371 1.22185 1.21571 0.99100 0.88694 0.87937 1.21831 1.01077 0.92601 1.11849 1.17235 0.85090 0.86927 0.75909 1.90626 1.17022 1.85727 1.54917 1.48082 1.08080 1.05215 1.70699 1.19038 0.75220 0.95977 0.96122 1.21655 0.94707 1.48619 0.92899 0.92913 1.25586 0.96771 0.94589 1.00644 1.70022 1.05182 1.48279 1.32357 0.85638 0.77883 0.78128 0.80548 1.19798 1.20831 1.19767 1.20144 1.01645 0.82357 0.91997 1.21296 0.95352 1.00468 0.98653 1.21784 0.97175 0.94916 0.95156 1.22473 1.01643 0.99562 0.95132 1.23345 0.87719 0.95036 1.00856 1.67709 1.27449 1.18007 1.08850 1.22701 0.98282 0.94141 0.90693 1.24212 0.98558 0.91895 0.97297 1.77095 0.98077 1.13384 1.26843 1.48719 1.03154 1.07906 1.54688 1.22352 1.02617 0.75156 1.05229 0.87875 0.87700 0.88718 0.84177 0.86614 0.96208 0.95786 0.92444 0.89481 0.89561 0.84452 0.81476 0.79698 0.83549 0.80546 0.88819 0.85980 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.70 71.24 0.69 -0.45 16 2 C 0.13 2.91 7.02 42.18 0.30 3.21 16 3 C -0.26 -8.06 6.08 -20.19 -0.12 -8.18 16 4 C 0.05 1.62 9.33 23.82 0.22 1.84 16 5 C -0.25 -10.20 8.60 22.42 0.19 -10.01 16 6 C 0.55 23.82 7.45 85.13 0.63 24.46 16 7 O -0.60 -25.68 15.33 -4.49 -0.07 -25.75 16 8 N -0.59 -25.80 2.44 -840.92 -2.05 -27.85 16 9 C 0.26 12.75 4.85 85.63 0.42 13.16 16 10 C -0.54 -28.74 9.39 25.60 0.24 -28.50 16 11 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 12 C 0.02 1.31 5.46 84.66 0.46 1.77 16 13 N -0.92 -51.82 13.29 21.45 0.28 -51.54 16 14 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 C 0.16 6.12 5.56 85.63 0.48 6.60 16 19 C -0.15 -5.36 5.48 -19.77 -0.11 -5.47 16 20 C -0.06 -1.94 9.86 22.47 0.22 -1.72 16 21 C -0.17 -4.15 10.11 22.36 0.23 -3.92 16 22 C 0.09 2.29 11.18 84.69 0.95 3.23 16 23 N -0.51 -17.04 10.36 -195.84 -2.03 -19.07 16 24 C 0.10 3.48 10.86 84.67 0.92 4.40 16 25 C 0.07 2.27 11.39 85.69 0.98 3.25 16 26 N -0.33 -10.73 12.49 -56.18 -0.70 -11.43 16 27 N -0.37 -8.51 3.98 -353.99 -1.41 -9.92 16 28 C 0.09 0.97 11.06 127.77 1.41 2.39 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.62 7.72 -2.39 -0.02 0.61 16 31 H 0.09 1.17 7.61 -2.38 -0.02 1.15 16 32 H 0.14 4.21 7.02 -2.91 -0.02 4.19 16 33 H 0.12 5.14 4.96 -2.91 -0.01 5.13 16 34 H 0.02 1.03 8.07 -2.39 -0.02 1.02 16 35 H 0.02 1.27 6.08 -2.38 -0.01 1.26 16 36 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 37 H 0.09 3.24 8.02 -2.39 -0.02 3.22 16 38 H 0.09 3.16 7.37 -2.39 -0.02 3.14 16 39 H 0.14 4.18 7.70 -2.91 -0.02 4.16 16 40 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.19 3.35 8.06 -2.91 -0.02 3.32 16 42 H 0.15 5.29 8.06 -2.91 -0.02 5.27 16 43 H 0.18 6.40 7.31 -2.91 -0.02 6.38 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.12 0.55 7.64 -2.39 -0.02 0.53 16 46 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -72.99 396.37 5.15 -67.85 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.99 Total: 26.61 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 8.10 Total: 6.05 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -5.91 Total: -119.80 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.07 Total: -25.75 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.99 5.15 -67.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161359420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.344 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds