Wall clock time and date at job start Tue Mar 31 2020 22:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37727 * 119.95642 * 2 1 4 4 C 1.39752 * 119.91253 * 179.73265 * 3 2 1 5 5 C 1.47558 * 120.08507 * 180.26981 * 4 3 2 6 6 O 1.21624 * 119.99669 * 32.83262 * 5 4 3 7 7 N 1.34773 * 120.00698 * 212.82509 * 5 4 3 8 8 C 1.36888 * 119.99655 * 357.50619 * 7 5 4 9 9 H 1.07997 * 119.99739 * 236.15680 * 8 7 5 10 10 C 1.39036 * 120.00014 * 56.15449 * 8 7 5 11 11 N 1.31370 * 120.00301 * 6.56339 * 10 8 7 12 12 Si 1.86797 * 119.99979 * 186.56080 * 10 8 7 13 13 H 1.48508 * 109.46989 * 60.00182 * 12 10 8 14 14 H 1.48499 * 109.47364 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47231 * 300.00476 * 12 10 8 16 16 C 1.46498 * 120.00393 * 177.50081 * 7 5 4 17 17 C 1.54267 * 110.03068 * 241.55924 * 16 7 5 18 18 C 1.54957 * 104.15974 * 217.13443 * 17 16 7 19 19 C 1.54886 * 102.77920 * 37.89322 * 18 17 16 20 20 C 1.53869 * 110.03085 * 124.34606 * 16 7 5 21 21 C 1.39787 * 119.83123 * 0.54469 * 4 3 2 22 22 C 1.37683 * 119.91867 * 359.72798 * 21 4 3 23 23 C 1.39044 * 119.95935 * 180.27770 * 2 1 3 24 24 N 1.39863 * 119.91098 * 359.97438 * 23 2 1 25 25 C 1.34808 * 126.84235 * 182.67884 * 24 23 2 26 26 N 1.30825 * 108.01975 * 179.97438 * 25 24 23 27 27 C 1.33289 * 109.84507 * 359.97438 * 26 25 24 28 28 N 1.30726 * 109.01683 * 359.75305 * 27 26 25 29 29 H 1.09000 * 109.46822 * 262.58857 * 1 2 3 30 30 H 1.09000 * 109.47373 * 142.58995 * 1 2 3 31 31 H 1.08996 * 109.47437 * 22.58672 * 1 2 3 32 32 H 1.08001 * 120.04678 * 0.02562 * 3 2 1 33 33 H 0.96996 * 120.00432 * 184.99011 * 11 10 8 34 34 H 1.08998 * 110.01631 * 2.95128 * 16 7 5 35 35 H 1.08996 * 110.48845 * 335.78796 * 17 16 7 36 36 H 1.09009 * 110.48328 * 98.42770 * 17 16 7 37 37 H 1.08998 * 110.72382 * 279.57570 * 18 17 16 38 38 H 1.09005 * 110.92143 * 156.29893 * 18 17 16 39 39 H 1.09002 * 110.48474 * 203.40563 * 19 18 17 40 40 H 1.09000 * 110.60187 * 80.81679 * 19 18 17 41 41 H 1.09002 * 110.03110 * 238.56889 * 20 16 7 42 42 H 1.08998 * 110.03749 * 359.94965 * 20 16 7 43 43 H 1.08009 * 120.04114 * 179.75000 * 21 4 3 44 44 H 1.07992 * 119.96302 * 180.02562 * 22 21 4 45 45 H 1.08001 * 125.99285 * 359.93909 * 25 24 23 46 46 H 1.08000 * 125.48692 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1933 0.0000 4 6 3.5923 1.1922 0.0057 5 6 4.3329 2.4684 0.0117 6 8 3.8703 3.4372 0.5832 7 7 5.5220 2.5606 -0.6159 8 6 6.0668 1.4571 -1.2154 9 1 7.0563 1.1251 -0.9378 10 6 5.3463 0.7638 -2.1814 11 7 4.1997 1.2384 -2.6123 12 14 6.0088 -0.8427 -2.8667 13 1 6.1661 -1.8241 -1.7633 14 1 5.0603 -1.3791 -3.8755 15 1 7.3271 -0.6017 -3.5065 16 6 6.2314 3.8417 -0.6568 17 6 6.4011 4.3054 -2.1183 18 6 7.8039 4.9630 -2.1470 19 6 8.6305 4.0479 -1.2099 20 6 7.6482 3.6783 -0.0792 21 6 4.2867 -0.0209 -0.0002 22 6 3.5923 -1.2098 -0.0059 23 6 2.2014 -1.2046 -0.0058 24 7 1.4993 -2.4143 -0.0112 25 6 2.0257 -3.6546 0.0333 26 7 1.0394 -4.5138 0.0106 27 6 -0.1239 -3.8659 -0.0474 28 7 0.1053 -2.5789 -0.0571 29 1 -0.3633 -0.1326 1.0191 30 1 -0.3634 -0.8163 -0.6243 31 1 -0.3634 0.9488 -0.3947 32 1 1.6548 2.1286 0.0004 33 1 3.6623 0.7204 -3.2318 34 1 5.6808 4.5914 -0.0887 35 1 6.3659 3.4523 -2.7958 36 1 5.6324 5.0330 -2.3793 37 1 7.7615 5.9794 -1.7555 38 1 8.2164 4.9563 -3.1559 39 1 9.4883 4.5877 -0.8088 40 1 8.9576 3.1527 -1.7388 41 1 7.7854 4.3493 0.7688 42 1 7.8077 2.6460 0.2324 43 1 5.3668 -0.0257 0.0000 44 1 4.1280 -2.1474 -0.0101 45 1 3.0772 -3.8966 0.0791 46 1 -1.0990 -4.3294 -0.0767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173857093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:50 Heat of formation + Delta-G solvation = 100.392691 kcal Electronic energy + Delta-G solvation = -30448.345175 eV Core-core repulsion = 26533.504846 eV Total energy + Delta-G solvation = -3914.840329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18177 -39.67175 -38.28085 -36.62870 -34.63377 -33.52660 -32.41053 -31.51275 -30.98512 -29.28679 -28.04829 -27.28655 -26.30027 -25.09810 -23.92843 -22.45176 -21.60767 -20.50839 -20.08042 -19.76867 -19.44455 -17.84560 -16.97412 -15.98966 -15.72160 -15.66425 -15.34103 -14.79144 -14.68266 -14.45877 -14.02492 -13.93021 -13.53265 -13.44848 -13.10329 -12.92735 -12.75260 -12.68730 -12.57759 -12.06469 -11.90608 -11.57513 -11.32836 -11.17663 -11.09609 -10.88633 -10.70980 -10.56275 -10.55137 -10.45645 -10.43371 -10.28461 -10.04813 -9.85085 -9.75385 -9.72976 -9.09193 -8.65073 -8.22113 -7.62382 -7.30580 -6.49847 -4.38709 0.99676 1.97829 2.24367 2.41014 2.96000 2.99034 3.07475 3.10910 3.78852 3.92550 4.31138 4.44875 4.63528 4.76959 4.87887 5.00526 5.20050 5.27914 5.30473 5.40021 5.47903 5.71391 5.83488 5.99358 6.01313 6.02171 6.11868 6.16197 6.17887 6.22387 6.25668 6.26486 6.33824 6.36846 6.42958 6.46225 6.54633 6.63793 6.78268 6.83087 6.86415 6.90608 7.01155 7.10071 7.17783 7.27263 7.29153 7.53656 7.84922 8.09246 8.45927 8.76539 9.39739 9.83530 10.50622 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.003865 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.446097 B = 7242.012757 C = 8129.190014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.057 4.057 4 C -0.034 4.034 5 C 0.552 3.448 6 O -0.602 6.602 7 N -0.438 5.438 8 C -0.356 4.356 9 H 0.086 0.914 10 C 0.063 3.937 11 N -0.842 5.842 12 Si 0.895 3.105 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.271 1.271 16 C 0.135 3.865 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.126 4.126 21 C -0.044 4.044 22 C -0.156 4.156 23 C 0.124 3.876 24 N -0.306 5.306 25 C 0.251 3.749 26 N -0.546 5.546 27 C 0.186 3.814 28 N -0.309 5.309 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.127 0.873 33 H 0.274 0.726 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.165 0.835 44 H 0.120 0.880 45 H 0.218 0.782 46 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 -4.119 2.277 4.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.076 4.076 4 C -0.038 4.038 5 C 0.342 3.658 6 O -0.488 6.488 7 N -0.157 5.157 8 C -0.484 4.484 9 H 0.104 0.896 10 C -0.148 4.148 11 N -0.475 5.475 12 Si 0.720 3.280 13 H -0.189 1.189 14 H -0.207 1.207 15 H -0.196 1.196 16 C 0.031 3.969 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.164 4.164 21 C -0.063 4.063 22 C -0.176 4.176 23 C 0.032 3.968 24 N -0.088 5.088 25 C -0.044 4.044 26 N -0.273 5.273 27 C -0.116 4.116 28 N -0.137 5.137 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.182 0.818 44 H 0.138 0.862 45 H 0.235 0.765 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.066 -3.450 2.326 4.161 hybrid contribution 0.476 -0.913 -0.871 1.348 sum 0.410 -4.363 1.456 4.617 Atomic orbital electron populations 1.21024 0.90364 1.02887 1.02490 1.19378 0.96418 0.90677 1.02764 1.20838 0.93164 0.96568 0.97073 1.19733 0.92813 0.94184 0.97024 1.18179 0.82364 0.86824 0.78408 1.90619 1.70058 1.39428 1.48719 1.43129 1.17660 1.07547 1.47367 1.19020 1.03871 1.05365 1.20097 0.89625 1.25608 0.96016 0.99109 0.94048 1.69790 1.11796 1.36334 1.29560 0.86536 0.79214 0.82582 0.79631 1.18912 1.20736 1.19580 1.21601 0.92021 0.87792 0.95534 1.22587 0.94799 1.00364 0.98154 1.22447 0.96610 0.98191 0.98827 1.22251 0.97079 0.99188 0.96859 1.22385 0.95046 1.01819 0.97187 1.21927 1.02376 0.89676 0.92327 1.20678 0.90262 0.99570 1.07132 1.17531 0.90246 0.81819 1.07188 1.47694 1.04433 1.06103 1.50585 1.26099 1.00934 0.80339 0.97019 1.70568 0.98029 1.33721 1.24947 1.26164 0.98525 0.88204 0.98665 1.78212 0.90521 1.18582 1.26345 0.92035 0.88848 0.92536 0.85503 0.91556 0.90290 0.89419 0.93072 0.92498 0.92431 0.92943 0.91630 0.92865 0.90881 0.81752 0.86176 0.76549 0.76722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 8.86 36.01 0.32 -1.49 16 2 C -0.09 -1.69 5.89 -104.51 -0.62 -2.30 16 3 C -0.06 -1.17 9.21 -39.20 -0.36 -1.53 16 4 C -0.03 -0.74 3.81 -104.95 -0.40 -1.14 16 5 C 0.55 13.27 6.87 -12.46 -0.09 13.18 16 6 O -0.60 -15.78 16.12 5.26 0.08 -15.69 16 7 N -0.44 -9.83 2.36 -107.71 -0.25 -10.08 16 8 C -0.36 -7.71 4.86 -15.00 -0.07 -7.79 16 9 H 0.09 1.79 6.99 -52.49 -0.37 1.43 16 10 C 0.06 1.38 2.99 -17.45 -0.05 1.32 16 11 N -0.84 -20.20 11.35 55.50 0.63 -19.57 16 12 Si 0.89 17.54 28.30 -169.99 -4.81 12.73 16 13 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 C 0.13 2.73 3.29 -66.82 -0.22 2.51 16 17 C -0.12 -2.30 6.42 -25.04 -0.16 -2.46 16 18 C -0.12 -1.88 6.91 -24.70 -0.17 -2.05 16 19 C -0.12 -1.73 6.83 -25.07 -0.17 -1.91 16 20 C -0.13 -2.14 6.24 -25.61 -0.16 -2.30 16 21 C -0.04 -0.87 6.04 -39.21 -0.24 -1.10 16 22 C -0.16 -2.70 9.34 -39.47 -0.37 -3.07 16 23 C 0.12 2.22 6.68 -83.58 -0.56 1.66 16 24 N -0.31 -5.01 3.81 -11.76 -0.04 -5.05 16 25 C 0.25 3.57 11.97 -90.32 -1.08 2.49 16 26 N -0.55 -7.97 11.19 -15.73 -0.18 -8.15 16 27 C 0.19 2.52 13.03 -91.76 -1.20 1.33 16 28 N -0.31 -4.88 8.74 29.30 0.26 -4.62 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.55 5.48 -51.93 -0.28 1.27 16 31 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 32 H 0.13 2.64 7.95 -52.49 -0.42 2.22 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.08 1.72 6.94 -51.93 -0.36 1.36 16 35 H 0.09 1.90 7.18 -51.93 -0.37 1.52 16 36 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.29 6.70 -51.93 -0.35 0.94 16 43 H 0.17 3.21 5.06 -52.48 -0.27 2.94 16 44 H 0.12 1.72 6.79 -52.49 -0.36 1.36 16 45 H 0.22 2.28 7.09 -52.49 -0.37 1.91 16 46 H 0.22 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -27.57 364.02 -10.50 -38.07 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.08 Total: 11.53 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -5.59 Total: -4.65 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.41 Total: -47.47 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.08 Total: -15.69 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -4.81 Total: 12.73 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.57 -10.50 -38.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173857093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.465 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds