Wall clock time and date at job start Tue Mar 31 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37727 * 119.95642 * 2 1 4 4 C 1.39752 * 119.91253 * 179.73265 * 3 2 1 5 5 C 1.47558 * 120.08507 * 180.26981 * 4 3 2 6 6 O 1.21624 * 119.99669 * 32.83262 * 5 4 3 7 7 N 1.34773 * 120.00698 * 212.82509 * 5 4 3 8 8 C 1.36888 * 119.99655 * 357.50619 * 7 5 4 9 9 H 1.07997 * 119.99739 * 236.15680 * 8 7 5 10 10 C 1.39036 * 120.00014 * 56.15449 * 8 7 5 11 11 N 1.31370 * 120.00301 * 6.56339 * 10 8 7 12 12 Si 1.86797 * 119.99979 * 186.56080 * 10 8 7 13 13 H 1.48508 * 109.46989 * 60.00182 * 12 10 8 14 14 H 1.48499 * 109.47364 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47231 * 300.00476 * 12 10 8 16 16 C 1.46498 * 120.00393 * 177.50081 * 7 5 4 17 17 C 1.54267 * 110.03068 * 241.55924 * 16 7 5 18 18 C 1.54957 * 104.15974 * 217.13443 * 17 16 7 19 19 C 1.54886 * 102.77920 * 37.89322 * 18 17 16 20 20 C 1.53869 * 110.03085 * 124.34606 * 16 7 5 21 21 C 1.39787 * 119.83123 * 0.54469 * 4 3 2 22 22 C 1.37683 * 119.91867 * 359.72798 * 21 4 3 23 23 C 1.39044 * 119.95935 * 180.27770 * 2 1 3 24 24 N 1.39863 * 119.91098 * 359.97438 * 23 2 1 25 25 C 1.34808 * 126.84235 * 182.67884 * 24 23 2 26 26 N 1.30825 * 108.01975 * 179.97438 * 25 24 23 27 27 C 1.33289 * 109.84507 * 359.97438 * 26 25 24 28 28 N 1.30726 * 109.01683 * 359.75305 * 27 26 25 29 29 H 1.09000 * 109.46822 * 262.58857 * 1 2 3 30 30 H 1.09000 * 109.47373 * 142.58995 * 1 2 3 31 31 H 1.08996 * 109.47437 * 22.58672 * 1 2 3 32 32 H 1.08001 * 120.04678 * 0.02562 * 3 2 1 33 33 H 0.96996 * 120.00432 * 184.99011 * 11 10 8 34 34 H 1.08998 * 110.01631 * 2.95128 * 16 7 5 35 35 H 1.08996 * 110.48845 * 335.78796 * 17 16 7 36 36 H 1.09009 * 110.48328 * 98.42770 * 17 16 7 37 37 H 1.08998 * 110.72382 * 279.57570 * 18 17 16 38 38 H 1.09005 * 110.92143 * 156.29893 * 18 17 16 39 39 H 1.09002 * 110.48474 * 203.40563 * 19 18 17 40 40 H 1.09000 * 110.60187 * 80.81679 * 19 18 17 41 41 H 1.09002 * 110.03110 * 238.56889 * 20 16 7 42 42 H 1.08998 * 110.03749 * 359.94965 * 20 16 7 43 43 H 1.08009 * 120.04114 * 179.75000 * 21 4 3 44 44 H 1.07992 * 119.96302 * 180.02562 * 22 21 4 45 45 H 1.08001 * 125.99285 * 359.93909 * 25 24 23 46 46 H 1.08000 * 125.48692 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1933 0.0000 4 6 3.5923 1.1922 0.0057 5 6 4.3329 2.4684 0.0117 6 8 3.8703 3.4372 0.5832 7 7 5.5220 2.5606 -0.6159 8 6 6.0668 1.4571 -1.2154 9 1 7.0563 1.1251 -0.9378 10 6 5.3463 0.7638 -2.1814 11 7 4.1997 1.2384 -2.6123 12 14 6.0088 -0.8427 -2.8667 13 1 6.1661 -1.8241 -1.7633 14 1 5.0603 -1.3791 -3.8755 15 1 7.3271 -0.6017 -3.5065 16 6 6.2314 3.8417 -0.6568 17 6 6.4011 4.3054 -2.1183 18 6 7.8039 4.9630 -2.1470 19 6 8.6305 4.0479 -1.2099 20 6 7.6482 3.6783 -0.0792 21 6 4.2867 -0.0209 -0.0002 22 6 3.5923 -1.2098 -0.0059 23 6 2.2014 -1.2046 -0.0058 24 7 1.4993 -2.4143 -0.0112 25 6 2.0257 -3.6546 0.0333 26 7 1.0394 -4.5138 0.0106 27 6 -0.1239 -3.8659 -0.0474 28 7 0.1053 -2.5789 -0.0571 29 1 -0.3633 -0.1326 1.0191 30 1 -0.3634 -0.8163 -0.6243 31 1 -0.3634 0.9488 -0.3947 32 1 1.6548 2.1286 0.0004 33 1 3.6623 0.7204 -3.2318 34 1 5.6808 4.5914 -0.0887 35 1 6.3659 3.4523 -2.7958 36 1 5.6324 5.0330 -2.3793 37 1 7.7615 5.9794 -1.7555 38 1 8.2164 4.9563 -3.1559 39 1 9.4883 4.5877 -0.8088 40 1 8.9576 3.1527 -1.7388 41 1 7.7854 4.3493 0.7688 42 1 7.8077 2.6460 0.2324 43 1 5.3668 -0.0257 0.0000 44 1 4.1280 -2.1474 -0.0101 45 1 3.0772 -3.8966 0.0791 46 1 -1.0990 -4.3294 -0.0767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173857093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:49 Heat of formation + Delta-G solvation = 89.629387 kcal Electronic energy + Delta-G solvation = -30448.811907 eV Core-core repulsion = 26533.504846 eV Total energy + Delta-G solvation = -3915.307061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.32493 -41.29209 -39.76096 -38.22032 -36.30375 -34.86169 -33.79118 -33.20161 -32.19090 -30.69611 -29.46334 -28.77845 -27.67339 -26.81927 -25.29398 -23.68982 -22.94128 -21.82274 -21.45459 -21.34125 -21.01323 -19.13618 -18.60812 -17.59968 -17.17666 -16.90197 -16.74975 -16.32618 -16.10306 -15.87489 -15.48921 -15.15326 -15.01310 -14.94194 -14.52647 -14.44854 -14.13341 -14.09788 -13.89476 -13.61796 -13.37262 -13.10335 -12.96636 -12.63082 -12.56078 -12.31337 -12.17593 -12.12785 -11.90462 -11.84885 -11.81987 -11.67246 -11.40192 -11.27406 -10.98664 -10.88159 -10.77753 -10.40492 -9.68725 -9.26444 -8.90694 -8.20162 -6.14445 -0.32913 0.49175 0.93040 1.21051 1.45879 1.50906 1.56208 1.89441 2.13985 2.31983 2.83297 3.09890 3.24373 3.36522 3.46138 3.83103 3.87572 3.93563 3.99145 4.04731 4.15275 4.29352 4.43662 4.53878 4.61998 4.66596 4.71739 4.74429 4.80918 4.83344 4.84556 4.93434 4.97070 5.08470 5.09330 5.16636 5.23369 5.26621 5.35891 5.41310 5.48628 5.53483 5.56224 5.61544 5.62760 5.73274 5.77182 6.10827 6.15322 6.69561 6.98359 7.04754 7.61346 8.08374 8.78829 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.003865 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.446097 B = 7242.012757 C = 8129.190014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.100 4.100 3 C -0.071 4.071 4 C -0.060 4.060 5 C 0.532 3.468 6 O -0.643 6.643 7 N -0.439 5.439 8 C -0.355 4.355 9 H 0.098 0.902 10 C 0.038 3.962 11 N -0.873 5.873 12 Si 0.939 3.061 13 H -0.230 1.230 14 H -0.299 1.299 15 H -0.271 1.271 16 C 0.121 3.879 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.046 4.046 22 C -0.148 4.148 23 C 0.134 3.866 24 N -0.325 5.325 25 C 0.258 3.742 26 N -0.558 5.558 27 C 0.196 3.804 28 N -0.337 5.337 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.265 0.735 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.166 0.834 44 H 0.160 0.840 45 H 0.253 0.747 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 -6.760 2.266 7.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.102 4.102 3 C -0.091 4.091 4 C -0.063 4.063 5 C 0.323 3.677 6 O -0.533 6.533 7 N -0.156 5.156 8 C -0.483 4.483 9 H 0.115 0.885 10 C -0.169 4.169 11 N -0.506 5.506 12 Si 0.763 3.237 13 H -0.152 1.152 14 H -0.226 1.226 15 H -0.196 1.196 16 C 0.018 3.982 17 C -0.156 4.156 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.158 4.158 21 C -0.065 4.065 22 C -0.168 4.168 23 C 0.041 3.959 24 N -0.108 5.108 25 C -0.036 4.036 26 N -0.284 5.284 27 C -0.105 4.105 28 N -0.164 5.164 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.183 0.817 44 H 0.177 0.823 45 H 0.269 0.731 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.639 -6.104 2.326 6.735 hybrid contribution -0.137 -0.159 -0.868 0.893 sum 1.501 -6.264 1.457 6.604 Atomic orbital electron populations 1.20976 0.89007 1.03005 1.02895 1.19557 0.97505 0.90508 1.02680 1.20763 0.93096 0.96830 0.98440 1.19672 0.93137 0.94072 0.99436 1.18745 0.83094 0.87486 0.78356 1.90560 1.71121 1.40979 1.50648 1.43351 1.17331 1.08517 1.46390 1.19247 1.04018 1.05260 1.19749 0.88486 1.26139 0.95627 1.01324 0.93835 1.69953 1.13164 1.37311 1.30214 0.85831 0.77967 0.80383 0.79563 1.15231 1.22588 1.19572 1.21828 0.93534 0.86603 0.96255 1.22483 0.97303 0.99228 0.96543 1.22419 0.93679 0.98737 1.00186 1.22224 0.97260 0.99341 0.95675 1.22326 0.93181 1.01839 0.98408 1.21869 1.02345 0.89638 0.92675 1.20980 0.90211 1.00223 1.05427 1.17550 0.90647 0.82273 1.05387 1.47673 1.04856 1.06002 1.52275 1.26922 1.02466 0.79344 0.94886 1.70661 0.98504 1.33815 1.25445 1.26966 0.99768 0.87544 0.96267 1.78186 0.90509 1.19949 1.27714 0.91382 0.88664 0.92430 0.87327 0.92481 0.92834 0.92174 0.94574 0.90841 0.90797 0.89746 0.91826 0.91522 0.91563 0.81720 0.82262 0.73121 0.73089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.36 8.86 71.24 0.63 -2.73 16 2 C -0.10 -3.80 5.89 -19.79 -0.12 -3.91 16 3 C -0.07 -3.11 9.21 22.51 0.21 -2.90 16 4 C -0.06 -2.70 3.81 -20.08 -0.08 -2.78 16 5 C 0.53 27.03 6.87 86.70 0.60 27.63 16 6 O -0.64 -36.23 16.12 -4.11 -0.07 -36.30 16 7 N -0.44 -20.40 2.36 -612.92 -1.45 -21.85 16 8 C -0.36 -15.47 4.86 84.10 0.41 -15.06 16 9 H 0.10 3.96 6.99 -2.91 -0.02 3.94 16 10 C 0.04 1.67 2.99 84.95 0.25 1.93 16 11 N -0.87 -43.07 11.35 21.68 0.25 -42.82 16 12 Si 0.94 34.42 28.30 68.60 1.94 36.37 16 13 H -0.23 -7.11 7.11 99.48 0.71 -6.40 16 14 H -0.30 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 16 C 0.12 5.09 3.29 45.71 0.15 5.24 16 17 C -0.12 -4.58 6.42 31.69 0.20 -4.38 16 18 C -0.11 -3.25 6.91 31.91 0.22 -3.03 16 19 C -0.11 -2.94 6.83 31.67 0.22 -2.72 16 20 C -0.12 -3.96 6.24 31.32 0.20 -3.77 16 21 C -0.05 -1.80 6.04 22.51 0.14 -1.66 16 22 C -0.15 -4.82 9.34 22.34 0.21 -4.61 16 23 C 0.13 4.63 6.68 38.26 0.26 4.88 16 24 N -0.33 -9.89 3.81 -191.13 -0.73 -10.62 16 25 C 0.26 6.41 11.97 180.24 2.16 8.57 16 26 N -0.56 -14.38 11.19 -203.68 -2.28 -16.66 16 27 C 0.20 4.71 13.03 180.75 2.35 7.07 16 28 N -0.34 -9.93 8.74 -61.21 -0.53 -10.47 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.10 3.13 5.48 -2.39 -0.01 3.11 16 31 H 0.06 1.83 8.03 -2.39 -0.02 1.81 16 32 H 0.11 4.95 7.95 -2.91 -0.02 4.93 16 33 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 34 H 0.05 2.48 6.94 -2.39 -0.02 2.46 16 35 H 0.06 2.68 7.18 -2.39 -0.02 2.66 16 36 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.29 6.70 -2.39 -0.02 2.27 16 43 H 0.17 6.26 5.06 -2.91 -0.01 6.24 16 44 H 0.16 3.82 6.79 -2.91 -0.02 3.80 16 45 H 0.25 4.03 7.09 -2.91 -0.02 4.01 16 46 H 0.25 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -63.32 364.02 6.14 -57.17 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 1.01 Total: 37.42 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 8.00 Total: 7.76 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -4.74 Total: -102.41 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.07 Total: -36.30 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 1.94 Total: 36.37 kcal Total: -63.32 6.14 -57.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173857093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.801 kcal (2) G-P(sol) polarization free energy of solvation -63.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds