Wall clock time and date at job start Tue Mar 31 2020 23:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.32142 * 119.90261 * 2 1 4 4 C 1.32086 * 120.07149 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.05916 * 180.02562 * 4 3 2 6 6 C 1.39435 * 119.87479 * 359.97438 * 4 3 2 7 7 C 1.48153 * 120.10013 * 180.02562 * 6 4 3 8 8 O 1.21508 * 119.99825 * 285.13076 * 7 6 4 9 9 N 1.34777 * 119.99800 * 105.12544 * 7 6 4 10 10 C 1.46497 * 120.00168 * 354.97473 * 9 7 6 11 11 C 1.50705 * 109.47081 * 275.10019 * 10 9 7 12 12 H 1.08001 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99903 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99988 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00197 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46945 * 90.00211 * 15 13 11 17 17 H 1.48497 * 109.47308 * 209.99987 * 15 13 11 18 18 H 1.48502 * 109.46903 * 330.00099 * 15 13 11 19 19 C 1.46499 * 119.99803 * 174.97505 * 9 7 6 20 20 C 1.50706 * 109.47057 * 89.99888 * 19 9 7 21 21 C 1.38224 * 119.61913 * 94.97885 * 20 19 9 22 22 C 1.38625 * 119.16492 * 179.78921 * 21 20 19 23 23 C 1.38677 * 118.41473 * 0.47265 * 22 21 20 24 24 C 1.38186 * 119.16537 * 359.50901 * 23 22 21 25 25 N 1.31849 * 119.61619 * 274.99944 * 20 19 9 26 26 N 1.33007 * 119.80477 * 0.28054 * 6 4 3 27 27 C 1.31795 * 119.92640 * 359.44513 * 26 6 4 28 28 C 1.50699 * 119.93755 * 180.27613 * 27 26 6 29 29 H 1.09003 * 109.47324 * 90.00484 * 1 2 3 30 30 H 1.09004 * 109.47108 * 210.00425 * 1 2 3 31 31 H 1.09002 * 109.47721 * 330.00400 * 1 2 3 32 32 H 1.09004 * 109.46363 * 264.86961 * 5 4 3 33 33 H 1.08997 * 109.47203 * 24.86963 * 5 4 3 34 34 H 1.08997 * 109.46940 * 144.87716 * 5 4 3 35 35 H 1.09001 * 109.47278 * 35.09968 * 10 9 7 36 36 H 1.09004 * 109.47106 * 155.10467 * 10 9 7 37 37 H 0.97011 * 120.00298 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47170 * 330.00314 * 19 9 7 39 39 H 1.09001 * 109.47249 * 210.00039 * 19 9 7 40 40 H 1.08004 * 120.41991 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.79291 * 180.23741 * 22 21 20 42 42 H 1.08004 * 120.41404 * 179.77868 * 23 22 21 43 43 H 1.07994 * 119.61322 * 180.25082 * 24 23 22 44 44 H 1.09000 * 109.47271 * 270.27862 * 28 27 26 45 45 H 1.09001 * 109.47057 * 30.27717 * 28 27 26 46 46 H 1.08996 * 109.47563 * 150.28197 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2375 2.4560 0.0001 6 6 4.1846 -0.0576 -0.0005 7 6 5.6661 -0.0591 -0.0005 8 8 6.2739 0.2150 -1.0163 9 7 6.3397 -0.3643 1.1263 10 6 5.6112 -0.5867 2.3777 11 6 5.3609 0.7360 3.0552 12 1 5.7100 1.6508 2.5994 13 6 4.6873 0.7782 4.2573 14 7 4.4685 1.9325 4.8483 15 14 4.0840 -0.8041 5.0461 16 1 5.1391 -1.3450 5.9402 17 1 2.8587 -0.5267 5.8378 18 1 3.7748 -1.7984 3.9873 19 6 7.8003 -0.4737 1.0996 20 6 8.4103 0.8714 1.3997 21 6 8.7839 1.1785 2.6946 22 6 9.3482 2.4167 2.9593 23 6 9.5072 3.3076 1.9085 24 6 9.1102 2.9303 0.6398 25 7 8.5811 1.7417 0.4241 26 7 3.5165 -1.2077 -0.0056 27 6 2.1986 -1.2026 0.0004 28 6 1.4414 -2.5056 0.0008 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 4.4978 2.7257 -1.0235 33 1 3.6104 3.2353 0.4330 34 1 5.1475 2.3517 0.5909 35 1 4.6585 -1.0707 2.1624 36 1 6.2029 -1.2249 3.0340 37 1 3.9941 1.9623 5.6940 38 1 8.1218 -0.8063 0.1127 39 1 8.1244 -1.1951 1.8497 40 1 8.6416 0.4613 3.4895 41 1 9.6531 2.6827 3.9606 42 1 9.9398 4.2824 2.0789 43 1 9.2344 3.6169 -0.1845 44 1 1.2585 -2.8199 -1.0267 45 1 2.0286 -3.2668 0.5146 46 1 0.4896 -2.3725 0.5149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184963980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:35 Heat of formation + Delta-G solvation = 52.108158 kcal Electronic energy + Delta-G solvation = -30642.196564 eV Core-core repulsion = 26725.262461 eV Total energy + Delta-G solvation = -3916.934103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06733 -39.82352 -38.64095 -35.29495 -34.60467 -34.04848 -32.73122 -31.96955 -31.31819 -29.98366 -28.77493 -28.22712 -26.68468 -25.29341 -23.34711 -23.06427 -22.49725 -21.96620 -21.33451 -19.08218 -17.84796 -17.10711 -16.72705 -16.36082 -15.90945 -15.63406 -15.15647 -15.06424 -14.89178 -14.40876 -13.89835 -13.68650 -13.30921 -13.27000 -13.02851 -12.95075 -12.91555 -12.79224 -12.56757 -12.36615 -12.30571 -12.06385 -11.87129 -11.85065 -11.65133 -11.54901 -11.33757 -11.17539 -11.02631 -10.70994 -10.45299 -10.29140 -9.73122 -9.60243 -9.36653 -8.96377 -8.76189 -8.71439 -8.50498 -8.41303 -7.87841 -6.24155 -4.24801 1.01457 1.47148 1.53815 1.78960 3.05573 3.11940 3.21009 3.23566 3.49589 3.96001 4.23122 4.26304 4.36916 4.53274 4.71960 4.74361 4.88760 5.06379 5.14811 5.23647 5.26371 5.28719 5.44450 5.48822 5.52975 5.58325 5.62808 5.67365 5.78046 5.86534 5.91617 5.93131 6.04542 6.09142 6.12276 6.19645 6.27256 6.32871 6.49162 6.56579 6.63823 6.65225 6.77472 7.14195 7.20551 7.38943 7.61038 7.95727 8.12252 8.32317 8.51606 8.70552 8.82662 9.35150 10.87796 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.005222 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.504718 B = 5360.334576 C = 6519.111176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.088 3.912 3 N -0.437 5.437 4 C 0.140 3.860 5 C -0.097 4.097 6 C 0.070 3.930 7 C 0.590 3.410 8 O -0.527 6.527 9 N -0.574 5.574 10 C 0.206 3.794 11 C -0.534 4.534 12 H 0.080 0.920 13 C 0.081 3.919 14 N -0.885 5.885 15 Si 0.860 3.140 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.264 1.264 19 C 0.172 3.828 20 C 0.118 3.882 21 C -0.130 4.130 22 C -0.078 4.078 23 C -0.177 4.177 24 C 0.088 3.912 25 N -0.459 5.459 26 N -0.411 5.411 27 C 0.063 3.937 28 C -0.097 4.097 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.147 0.853 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -3.853 -5.426 6.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.054 4.054 3 N -0.153 5.153 4 C -0.001 4.001 5 C -0.155 4.155 6 C -0.073 4.073 7 C 0.374 3.626 8 O -0.402 6.402 9 N -0.305 5.305 10 C 0.085 3.915 11 C -0.572 4.572 12 H 0.098 0.902 13 C -0.123 4.123 14 N -0.523 5.523 15 Si 0.687 3.313 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.189 1.189 19 C 0.048 3.952 20 C -0.021 4.021 21 C -0.150 4.150 22 C -0.104 4.104 23 C -0.197 4.197 24 C -0.070 4.070 25 N -0.168 5.168 26 N -0.127 5.127 27 C -0.080 4.080 28 C -0.155 4.155 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.165 0.835 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.155 -3.871 -6.638 7.686 hybrid contribution -0.242 -0.273 1.881 1.916 sum -0.087 -4.143 -4.757 6.309 Atomic orbital electron populations 1.20744 0.88062 1.03937 1.03095 1.22177 0.98131 0.89048 0.96056 1.68159 1.07948 1.28718 1.10460 1.22004 0.89687 0.96106 0.92260 1.20708 1.00064 0.92012 1.02732 1.21718 0.95820 0.90097 0.99662 1.17474 0.84825 0.76706 0.83585 1.90779 1.68309 1.48266 1.32872 1.47750 1.05312 1.67441 1.09976 1.19932 0.92322 0.98158 0.81124 1.21295 1.37532 0.92520 1.05837 0.90209 1.24790 0.95160 0.95678 0.96651 1.69879 1.40794 1.24242 1.17350 0.87078 0.79270 0.84681 0.80272 1.19767 1.20892 1.18894 1.20199 0.79863 0.91719 1.03370 1.21502 0.94787 0.96424 0.89355 1.21915 0.97723 0.97909 0.97474 1.21476 0.96462 0.93413 0.99085 1.22045 1.02751 1.00420 0.94486 1.22631 0.95095 0.93357 0.95893 1.67542 1.11066 1.02452 1.35741 1.68166 1.08168 1.28377 1.08031 1.21958 0.90259 0.96591 0.99166 1.20694 0.99176 0.92593 1.03016 0.90160 0.90070 0.90173 0.90309 0.90064 0.89473 0.94680 0.94976 0.92485 0.88906 0.89103 0.84904 0.85387 0.85591 0.83531 0.90329 0.90344 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 9.78 36.00 0.35 -0.83 16 2 C 0.09 1.49 6.79 -82.28 -0.56 0.93 16 3 N -0.44 -8.67 10.34 -5.24 -0.05 -8.73 16 4 C 0.14 2.97 6.82 -82.04 -0.56 2.41 16 5 C -0.10 -1.96 9.69 36.01 0.35 -1.61 16 6 C 0.07 1.52 4.97 -82.84 -0.41 1.11 16 7 C 0.59 13.11 5.83 -12.19 -0.07 13.04 16 8 O -0.53 -12.37 16.73 5.36 0.09 -12.28 16 9 N -0.57 -12.12 2.45 -177.43 -0.44 -12.56 16 10 C 0.21 4.65 4.08 -5.19 -0.02 4.63 16 11 C -0.53 -13.72 9.90 -34.44 -0.34 -14.07 16 12 H 0.08 2.30 7.31 -52.49 -0.38 1.92 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.89 -25.28 13.96 55.43 0.77 -24.50 16 15 Si 0.86 20.02 27.47 -169.99 -4.67 15.36 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 19 C 0.17 3.13 5.72 -5.19 -0.03 3.10 16 20 C 0.12 2.21 6.36 -82.59 -0.53 1.68 16 21 C -0.13 -2.25 9.72 -39.44 -0.38 -2.63 16 22 C -0.08 -1.22 10.18 -39.28 -0.40 -1.62 16 23 C -0.18 -2.60 10.11 -39.44 -0.40 -3.00 16 24 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 25 N -0.46 -8.77 10.27 -9.47 -0.10 -8.87 16 26 N -0.41 -8.36 9.68 -5.88 -0.06 -8.42 16 27 C 0.06 1.08 6.79 -82.43 -0.56 0.52 16 28 C -0.10 -1.17 9.78 36.01 0.35 -0.81 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.76 5.94 -51.93 -0.31 0.45 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.09 1.97 6.52 -51.93 -0.34 1.63 16 35 H 0.04 0.84 5.53 -51.93 -0.29 0.56 16 36 H 0.03 0.68 7.26 -51.93 -0.38 0.31 16 37 H 0.27 7.18 8.31 -40.81 -0.34 6.85 16 38 H 0.09 1.67 7.50 -51.93 -0.39 1.28 16 39 H 0.09 1.37 7.76 -51.93 -0.40 0.97 16 40 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 41 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 43 H 0.15 1.96 8.06 -52.49 -0.42 1.53 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.08 0.76 5.94 -51.93 -0.31 0.45 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -33.44 387.99 -8.29 -41.73 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.19 Total: 6.30 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -3.50 Total: 6.13 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.13 Total: -63.08 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.44 -8.29 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184963980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.842 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds