Wall clock time and date at job start Tue Mar 31 2020 23:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.32142 * 119.90261 * 2 1 4 4 C 1.32086 * 120.07149 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.05916 * 180.02562 * 4 3 2 6 6 C 1.39435 * 119.87479 * 359.97438 * 4 3 2 7 7 C 1.48153 * 120.10013 * 180.02562 * 6 4 3 8 8 O 1.21508 * 119.99825 * 285.13076 * 7 6 4 9 9 N 1.34777 * 119.99800 * 105.12544 * 7 6 4 10 10 C 1.46497 * 120.00168 * 354.97473 * 9 7 6 11 11 C 1.50705 * 109.47081 * 275.10019 * 10 9 7 12 12 H 1.08001 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99903 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99988 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00197 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46945 * 90.00211 * 15 13 11 17 17 H 1.48497 * 109.47308 * 209.99987 * 15 13 11 18 18 H 1.48502 * 109.46903 * 330.00099 * 15 13 11 19 19 C 1.46499 * 119.99803 * 174.97505 * 9 7 6 20 20 C 1.50706 * 109.47057 * 89.99888 * 19 9 7 21 21 C 1.38224 * 119.61913 * 94.97885 * 20 19 9 22 22 C 1.38625 * 119.16492 * 179.78921 * 21 20 19 23 23 C 1.38677 * 118.41473 * 0.47265 * 22 21 20 24 24 C 1.38186 * 119.16537 * 359.50901 * 23 22 21 25 25 N 1.31849 * 119.61619 * 274.99944 * 20 19 9 26 26 N 1.33007 * 119.80477 * 0.28054 * 6 4 3 27 27 C 1.31795 * 119.92640 * 359.44513 * 26 6 4 28 28 C 1.50699 * 119.93755 * 180.27613 * 27 26 6 29 29 H 1.09003 * 109.47324 * 90.00484 * 1 2 3 30 30 H 1.09004 * 109.47108 * 210.00425 * 1 2 3 31 31 H 1.09002 * 109.47721 * 330.00400 * 1 2 3 32 32 H 1.09004 * 109.46363 * 264.86961 * 5 4 3 33 33 H 1.08997 * 109.47203 * 24.86963 * 5 4 3 34 34 H 1.08997 * 109.46940 * 144.87716 * 5 4 3 35 35 H 1.09001 * 109.47278 * 35.09968 * 10 9 7 36 36 H 1.09004 * 109.47106 * 155.10467 * 10 9 7 37 37 H 0.97011 * 120.00298 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47170 * 330.00314 * 19 9 7 39 39 H 1.09001 * 109.47249 * 210.00039 * 19 9 7 40 40 H 1.08004 * 120.41991 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.79291 * 180.23741 * 22 21 20 42 42 H 1.08004 * 120.41404 * 179.77868 * 23 22 21 43 43 H 1.07994 * 119.61322 * 180.25082 * 24 23 22 44 44 H 1.09000 * 109.47271 * 270.27862 * 28 27 26 45 45 H 1.09001 * 109.47057 * 30.27717 * 28 27 26 46 46 H 1.08996 * 109.47563 * 150.28197 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2375 2.4560 0.0001 6 6 4.1846 -0.0576 -0.0005 7 6 5.6661 -0.0591 -0.0005 8 8 6.2739 0.2150 -1.0163 9 7 6.3397 -0.3643 1.1263 10 6 5.6112 -0.5867 2.3777 11 6 5.3609 0.7360 3.0552 12 1 5.7100 1.6508 2.5994 13 6 4.6873 0.7782 4.2573 14 7 4.4685 1.9325 4.8483 15 14 4.0840 -0.8041 5.0461 16 1 5.1391 -1.3450 5.9402 17 1 2.8587 -0.5267 5.8378 18 1 3.7748 -1.7984 3.9873 19 6 7.8003 -0.4737 1.0996 20 6 8.4103 0.8714 1.3997 21 6 8.7839 1.1785 2.6946 22 6 9.3482 2.4167 2.9593 23 6 9.5072 3.3076 1.9085 24 6 9.1102 2.9303 0.6398 25 7 8.5811 1.7417 0.4241 26 7 3.5165 -1.2077 -0.0056 27 6 2.1986 -1.2026 0.0004 28 6 1.4414 -2.5056 0.0008 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 4.4978 2.7257 -1.0235 33 1 3.6104 3.2353 0.4330 34 1 5.1475 2.3517 0.5909 35 1 4.6585 -1.0707 2.1624 36 1 6.2029 -1.2249 3.0340 37 1 3.9941 1.9623 5.6940 38 1 8.1218 -0.8063 0.1127 39 1 8.1244 -1.1951 1.8497 40 1 8.6416 0.4613 3.4895 41 1 9.6531 2.6827 3.9606 42 1 9.9398 4.2824 2.0789 43 1 9.2344 3.6169 -0.1845 44 1 1.2585 -2.8199 -1.0267 45 1 2.0286 -3.2668 0.5146 46 1 0.4896 -2.3725 0.5149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184963980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:34 Heat of formation + Delta-G solvation = 29.842964 kcal Electronic energy + Delta-G solvation = -30643.162055 eV Core-core repulsion = 26725.262461 eV Total energy + Delta-G solvation = -3917.899594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.52939 -41.19875 -40.19690 -37.00372 -36.02879 -35.40301 -34.65829 -33.31837 -32.73677 -31.34437 -30.06980 -29.94655 -28.10451 -26.71800 -24.84438 -24.41135 -24.13219 -23.42447 -22.71990 -20.64027 -19.39226 -18.98601 -18.33295 -17.84375 -17.41262 -17.00912 -16.54028 -16.41623 -16.33978 -16.11122 -15.39023 -15.24651 -14.76088 -14.61820 -14.51140 -14.27237 -14.10188 -14.02211 -13.96193 -13.86250 -13.76374 -13.63014 -13.39319 -13.29206 -13.11105 -12.80432 -12.73270 -12.65260 -12.47645 -12.39497 -12.15778 -11.84785 -11.66285 -11.33260 -10.79613 -10.68226 -10.32843 -10.16253 -9.87684 -9.82247 -9.55028 -8.29578 -6.33754 -0.43278 0.01500 0.23135 0.49964 1.29590 1.33181 1.40131 1.41147 1.96293 2.28969 2.51303 2.89380 3.00546 3.04623 3.11725 3.36172 3.45723 3.50501 3.85031 3.91062 4.00402 4.07290 4.15424 4.25431 4.33129 4.45267 4.46509 4.47688 4.52424 4.61788 4.62716 4.70693 4.74765 4.79110 4.80705 4.85273 4.93192 4.98853 5.04735 5.07717 5.28741 5.36053 5.40537 5.47965 5.54207 5.89116 6.11604 6.19253 6.39355 6.67382 6.69677 7.03390 7.20397 7.29454 8.85437 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.005222 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.504718 B = 5360.334576 C = 6519.111176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.087 3.913 3 N -0.456 5.456 4 C 0.112 3.888 5 C -0.084 4.084 6 C 0.039 3.961 7 C 0.588 3.412 8 O -0.551 6.551 9 N -0.574 5.574 10 C 0.217 3.783 11 C -0.516 4.516 12 H 0.037 0.963 13 C 0.030 3.970 14 N -0.931 5.931 15 Si 0.920 3.080 16 H -0.255 1.255 17 H -0.286 1.286 18 H -0.254 1.254 19 C 0.166 3.834 20 C 0.098 3.902 21 C -0.144 4.144 22 C -0.086 4.086 23 C -0.168 4.168 24 C 0.074 3.926 25 N -0.493 5.493 26 N -0.430 5.430 27 C 0.062 3.938 28 C -0.095 4.095 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.027 0.973 36 H 0.053 0.947 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.170 0.830 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 -5.646 -4.910 7.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.056 4.056 3 N -0.171 5.171 4 C -0.027 4.027 5 C -0.142 4.142 6 C -0.101 4.101 7 C 0.373 3.627 8 O -0.429 6.429 9 N -0.303 5.303 10 C 0.095 3.905 11 C -0.555 4.555 12 H 0.055 0.945 13 C -0.170 4.170 14 N -0.570 5.570 15 Si 0.744 3.256 16 H -0.179 1.179 17 H -0.212 1.212 18 H -0.178 1.178 19 C 0.044 3.956 20 C -0.040 4.040 21 C -0.165 4.165 22 C -0.112 4.112 23 C -0.188 4.188 24 C -0.084 4.084 25 N -0.203 5.203 26 N -0.147 5.147 27 C -0.082 4.082 28 C -0.152 4.152 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.155 0.845 41 H 0.171 0.829 42 H 0.181 0.819 43 H 0.187 0.813 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.290 -5.662 -6.125 8.440 hybrid contribution 0.146 0.339 1.642 1.683 sum -1.144 -5.323 -4.483 7.052 Atomic orbital electron populations 1.20975 0.83918 1.05399 1.05263 1.23158 1.00685 0.88207 0.93552 1.68200 1.07232 1.30468 1.11244 1.22018 0.90647 0.96011 0.94009 1.20513 0.98594 0.92362 1.02720 1.21618 0.95570 0.90915 1.02012 1.17694 0.85393 0.76101 0.83500 1.90735 1.69060 1.49451 1.33646 1.47765 1.06467 1.66974 1.09136 1.19714 0.92560 0.96516 0.81698 1.21238 1.36430 0.92363 1.05430 0.94463 1.25521 0.95459 0.98727 0.97275 1.70025 1.42401 1.26604 1.18014 0.86116 0.78961 0.80894 0.79628 1.17931 1.21230 1.17827 1.20448 0.78269 0.92724 1.04184 1.21533 0.95913 0.96627 0.89965 1.22068 0.98302 0.99026 0.97076 1.21876 0.95827 0.92907 1.00616 1.22431 1.01314 1.01602 0.93453 1.23137 0.94696 0.92948 0.97597 1.67503 1.12278 1.03808 1.36721 1.68201 1.09877 1.27729 1.08913 1.22945 0.89504 0.99027 0.96742 1.20926 0.99666 0.89509 1.05133 0.87366 0.86823 0.90451 0.89248 0.89969 0.92741 0.95504 0.92859 0.92569 0.89347 0.86160 0.84467 0.82935 0.81940 0.81268 0.87695 0.90558 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.78 71.23 0.70 -1.24 16 2 C 0.09 2.80 6.79 42.63 0.29 3.09 16 3 N -0.46 -18.10 10.34 -170.48 -1.76 -19.86 16 4 C 0.11 4.91 6.82 42.81 0.29 5.21 16 5 C -0.08 -3.61 9.69 71.24 0.69 -2.91 16 6 C 0.04 1.76 4.97 41.89 0.21 1.97 16 7 C 0.59 27.21 5.83 86.88 0.51 27.71 16 8 O -0.55 -27.22 16.73 -3.74 -0.06 -27.28 16 9 N -0.57 -24.86 2.45 -833.57 -2.04 -26.91 16 10 C 0.22 9.82 4.08 85.64 0.35 10.17 16 11 C -0.52 -27.20 9.90 25.60 0.25 -26.94 16 12 H 0.04 2.27 7.31 -2.91 -0.02 2.25 16 13 C 0.03 1.60 5.47 84.65 0.46 2.06 16 14 N -0.93 -54.33 13.96 21.44 0.30 -54.03 16 15 Si 0.92 40.61 27.47 68.60 1.88 42.50 16 16 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 19 C 0.17 6.19 5.72 85.63 0.49 6.68 16 20 C 0.10 3.76 6.36 42.55 0.27 4.03 16 21 C -0.14 -5.07 9.72 22.36 0.22 -4.85 16 22 C -0.09 -2.65 10.18 22.47 0.23 -2.42 16 23 C -0.17 -4.79 10.11 22.36 0.23 -4.57 16 24 C 0.07 2.40 11.18 84.67 0.95 3.35 16 25 N -0.49 -19.57 10.27 -183.89 -1.89 -21.46 16 26 N -0.43 -17.36 9.68 -172.53 -1.67 -19.03 16 27 C 0.06 2.00 6.79 42.68 0.29 2.29 16 28 C -0.10 -1.89 9.78 71.24 0.70 -1.20 16 29 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.50 5.94 -2.38 -0.01 1.49 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 33 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.05 2.66 6.52 -2.39 -0.02 2.65 16 35 H 0.03 1.28 5.53 -2.39 -0.01 1.27 16 36 H 0.05 2.19 7.26 -2.38 -0.02 2.18 16 37 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 38 H 0.09 3.32 7.50 -2.39 -0.02 3.30 16 39 H 0.12 3.60 7.76 -2.39 -0.02 3.58 16 40 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 41 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 42 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 43 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 44 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.11 1.51 5.94 -2.39 -0.01 1.50 16 Total: -1.00 -77.05 387.99 2.82 -74.23 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.95 Total: 29.42 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 7.11 Total: 22.43 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -7.07 Total: -141.30 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.06 Total: -27.28 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.88 Total: 42.50 kcal Total: -77.05 2.82 -74.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184963980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.074 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds