Wall clock time and date at job start Tue Mar 31 2020 23:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31818 * 119.12045 * 2 1 4 4 C 1.32321 * 120.81361 * 180.02562 * 3 2 1 5 5 C 1.38615 * 119.10478 * 0.02562 * 4 3 2 6 6 C 1.38581 * 118.40139 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.44764 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46973 * 125.00080 * 7 6 5 9 9 C 1.50697 * 109.46973 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00523 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99732 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00344 * 0.02562 * 11 9 8 13 13 C 1.50704 * 109.47069 * 270.00164 * 12 11 9 14 14 H 1.08002 * 119.99987 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99570 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00489 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99692 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47040 * 60.00203 * 17 15 13 19 19 H 1.48497 * 109.46893 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47044 * 299.99978 * 17 15 13 21 21 C 1.46504 * 120.00113 * 180.02562 * 11 9 8 22 22 C 1.50703 * 109.46750 * 270.00384 * 21 11 9 23 23 C 1.38223 * 119.62264 * 95.02018 * 22 21 11 24 24 C 1.38628 * 119.16031 * 179.97438 * 23 22 21 25 25 C 1.38672 * 118.42475 * 359.97438 * 24 23 22 26 26 C 1.38186 * 119.15778 * 0.02562 * 25 24 23 27 27 N 1.31856 * 119.61279 * 274.99490 * 22 21 11 28 28 N 1.31781 * 119.12406 * 180.28909 * 2 1 3 29 29 H 1.09005 * 109.46650 * 89.99984 * 1 2 3 30 30 H 1.08999 * 109.47401 * 209.99976 * 1 2 3 31 31 H 1.08997 * 109.47344 * 330.00639 * 1 2 3 32 32 H 1.07999 * 120.44089 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.79833 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47101 * 5.00569 * 7 6 5 35 35 H 1.08994 * 109.47529 * 245.00419 * 7 6 5 36 36 H 1.08998 * 109.46856 * 59.99897 * 8 7 6 37 37 H 1.09002 * 109.47033 * 300.00385 * 8 7 6 38 38 H 1.08998 * 109.46706 * 29.99693 * 12 11 9 39 39 H 1.08994 * 109.47447 * 149.99761 * 12 11 9 40 40 H 0.96996 * 120.00180 * 179.97438 * 16 15 13 41 41 H 1.08989 * 109.47587 * 150.00049 * 21 11 9 42 42 H 1.08996 * 109.46786 * 29.99457 * 21 11 9 43 43 H 1.07995 * 120.41821 * 359.95030 * 23 22 21 44 44 H 1.08006 * 120.78822 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.42192 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.60956 * 180.27218 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1516 0.0000 4 6 3.4712 1.1907 -0.0005 5 6 4.1809 0.0000 -0.0016 6 6 3.4713 -1.1904 -0.0015 7 6 4.1961 -2.5115 -0.0021 8 6 3.7165 -3.3569 1.1796 9 6 4.4409 -4.6783 1.1786 10 8 5.2605 -4.9201 0.3180 11 7 4.1780 -5.5916 2.1343 12 6 3.1876 -5.2999 3.1737 13 6 3.8684 -4.6405 4.3454 14 1 4.9324 -4.4573 4.3187 15 6 3.1328 -4.2709 5.4514 16 7 1.8370 -4.4935 5.4838 17 14 3.9765 -3.4528 6.9035 18 1 4.6136 -2.1879 6.4574 19 1 2.9726 -3.1573 7.9570 20 1 5.0140 -4.3636 7.4505 21 6 4.8826 -6.8761 2.1338 22 6 4.1038 -7.8758 1.3183 23 6 4.4257 -8.0715 -0.0116 24 6 3.7034 -8.9939 -0.7527 25 6 2.6801 -9.6886 -0.1256 26 6 2.4159 -9.4396 1.2077 27 7 3.1236 -8.5541 1.8819 28 7 2.1484 -1.1512 -0.0058 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 3.9906 2.1375 -0.0001 33 1 5.2609 0.0000 -0.0024 34 1 5.2685 -2.3377 0.0872 35 1 3.9899 -3.0388 -0.9335 36 1 2.6442 -3.5307 1.0903 37 1 3.9228 -2.8296 2.1110 38 1 2.4261 -4.6312 2.7725 39 1 2.7199 -6.2285 3.5008 40 1 1.3196 -4.2338 6.2620 41 1 4.9788 -7.2382 3.1573 42 1 5.8739 -6.7464 1.6996 43 1 5.2294 -7.5126 -0.4677 44 1 3.9328 -9.1680 -1.7937 45 1 2.0966 -10.4143 -0.6724 46 1 1.6235 -9.9796 1.7046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339929757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:19 Heat of formation + Delta-G solvation = 38.594829 kcal Electronic energy + Delta-G solvation = -28833.070174 eV Core-core repulsion = 24915.550089 eV Total energy + Delta-G solvation = -3917.520085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01828 -40.05155 -38.92064 -35.31246 -34.79109 -33.34874 -32.84977 -32.17468 -31.70468 -30.89781 -28.50451 -27.61119 -26.64153 -24.96538 -23.34215 -23.10417 -22.74997 -22.00542 -21.22411 -18.36645 -17.49775 -16.88052 -16.74744 -16.32370 -16.01783 -15.53968 -15.51881 -15.26484 -15.17045 -15.08132 -14.69612 -14.36490 -13.77347 -13.42965 -13.27389 -13.05277 -12.93258 -12.72738 -12.44604 -12.37309 -12.24634 -12.17171 -11.74861 -11.57699 -11.50389 -11.23037 -10.95879 -10.92019 -10.78165 -10.61491 -10.34681 -10.15674 -9.80319 -9.64745 -9.35224 -9.22498 -9.13529 -9.10000 -8.73477 -8.49698 -7.77641 -6.13656 -4.21073 0.95907 1.13746 1.30935 1.51977 3.25642 3.30536 3.31127 3.36904 3.69500 3.82951 3.97243 4.13605 4.25687 4.35595 4.56804 4.62067 4.97619 5.01614 5.04712 5.09717 5.19544 5.25993 5.32952 5.38261 5.41130 5.47323 5.52516 5.55407 5.56664 5.79220 5.83498 5.92270 5.97949 6.02469 6.06273 6.22823 6.34185 6.36228 6.41482 6.45749 6.53456 6.80298 6.92929 7.10450 7.28271 7.53959 7.80447 8.09908 8.18932 8.26945 8.36118 8.79985 8.96876 9.45850 10.93225 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.004019 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.137878 B = 6965.474937 C = 9313.401326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.319 3.681 3 N -0.530 5.530 4 C 0.149 3.851 5 C -0.234 4.234 6 C 0.191 3.809 7 C -0.055 4.055 8 C -0.124 4.124 9 C 0.520 3.480 10 O -0.578 6.578 11 N -0.585 5.585 12 C 0.238 3.762 13 C -0.539 4.539 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.167 3.833 22 C 0.121 3.879 23 C -0.152 4.152 24 C -0.084 4.084 25 C -0.182 4.182 26 C 0.095 3.905 27 N -0.464 5.464 28 N -0.512 5.512 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 1.134 -12.523 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.246 5.246 4 C -0.017 4.017 5 C -0.256 4.256 6 C 0.045 3.955 7 C -0.093 4.093 8 C -0.164 4.164 9 C 0.309 3.691 10 O -0.460 6.460 11 N -0.314 5.314 12 C 0.118 3.882 13 C -0.578 4.578 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.043 3.957 22 C -0.018 4.018 23 C -0.173 4.173 24 C -0.110 4.110 25 C -0.202 4.202 26 C -0.063 4.063 27 N -0.173 5.173 28 N -0.227 5.227 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.183 0.817 33 H 0.165 0.835 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.505 1.186 -11.924 11.993 hybrid contribution 1.387 0.315 0.100 1.426 sum 1.892 1.501 -11.823 12.068 Atomic orbital electron populations 1.20566 0.85843 1.04383 1.03582 1.23266 0.98182 0.83373 0.89996 1.68237 1.10168 1.30603 1.15554 1.23163 0.89759 0.98494 0.90237 1.22772 1.02955 0.94194 1.05709 1.21842 0.89529 0.96063 0.88043 1.20397 0.98970 0.89684 1.00266 1.21472 1.01955 0.93497 0.99493 1.20473 0.82252 0.85795 0.80600 1.90559 1.36530 1.80306 1.38623 1.48192 1.41603 1.13344 1.28289 1.19512 0.86360 0.97913 0.84421 1.21426 0.95044 1.40331 1.00969 0.92204 1.24917 0.94767 0.95641 0.98333 1.69919 1.05701 1.46688 1.30257 0.86614 0.79246 0.79908 0.82027 1.20246 1.21164 1.20081 1.20138 0.93778 0.81683 1.00133 1.21890 0.93080 0.94570 0.92307 1.22123 1.01493 0.98587 0.95056 1.21542 0.94659 0.94873 0.99912 1.22086 0.99465 1.01882 0.96758 1.22767 0.97567 0.94423 0.91516 1.67601 1.04923 1.05405 1.39398 1.68112 1.09697 1.30388 1.14498 0.89872 0.89297 0.89768 0.81699 0.83533 0.89255 0.89052 0.88229 0.87900 0.94544 0.93523 0.92518 0.88564 0.89309 0.84419 0.85323 0.85323 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 10.32 36.01 0.37 -0.60 16 2 C 0.32 4.72 7.64 -157.18 -1.20 3.52 16 3 N -0.53 -7.52 10.34 -10.72 -0.11 -7.63 16 4 C 0.15 1.79 11.31 -17.20 -0.19 1.59 16 5 C -0.23 -2.90 9.80 -39.32 -0.39 -3.29 16 6 C 0.19 2.86 6.20 -82.25 -0.51 2.35 16 7 C -0.05 -0.83 4.94 -27.88 -0.14 -0.97 16 8 C -0.12 -2.26 4.12 -27.88 -0.11 -2.38 16 9 C 0.52 10.37 7.67 -10.99 -0.08 10.28 16 10 O -0.58 -11.73 15.52 5.56 0.09 -11.64 16 11 N -0.58 -12.24 2.44 -176.44 -0.43 -12.67 16 12 C 0.24 5.74 4.97 -5.19 -0.03 5.71 16 13 C -0.54 -14.02 9.28 -34.44 -0.32 -14.34 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.17 3.14 5.72 -5.19 -0.03 3.11 16 22 C 0.12 2.14 6.36 -82.59 -0.53 1.62 16 23 C -0.15 -2.35 9.72 -39.44 -0.38 -2.74 16 24 C -0.08 -1.08 10.18 -39.28 -0.40 -1.48 16 25 C -0.18 -2.26 10.11 -39.44 -0.40 -2.66 16 26 C 0.09 1.39 11.18 -17.55 -0.20 1.19 16 27 N -0.46 -8.45 10.27 -9.47 -0.10 -8.55 16 28 N -0.51 -8.28 9.94 -6.99 -0.07 -8.35 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.15 1.40 8.01 -52.49 -0.42 0.97 16 34 H 0.09 1.25 7.90 -51.93 -0.41 0.84 16 35 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 36 H 0.10 1.91 7.24 -51.93 -0.38 1.54 16 37 H 0.10 2.03 8.00 -51.93 -0.42 1.61 16 38 H 0.04 0.93 6.44 -51.93 -0.33 0.59 16 39 H 0.05 1.23 8.07 -51.93 -0.42 0.81 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.10 1.86 8.07 -51.93 -0.42 1.44 16 42 H 0.09 1.56 7.32 -51.93 -0.38 1.18 16 43 H 0.14 2.08 8.01 -52.49 -0.42 1.66 16 44 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -31.83 397.58 -10.07 -41.90 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.52 Total: 6.77 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -4.63 Total: 2.60 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.03 Total: -61.35 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.83 -10.07 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339929757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.492 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds