Wall clock time and date at job start Tue Mar 31 2020 23:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31818 * 119.12045 * 2 1 4 4 C 1.32321 * 120.81361 * 180.02562 * 3 2 1 5 5 C 1.38615 * 119.10478 * 0.02562 * 4 3 2 6 6 C 1.38581 * 118.40139 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.44764 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46973 * 125.00080 * 7 6 5 9 9 C 1.50697 * 109.46973 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00523 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99732 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00344 * 0.02562 * 11 9 8 13 13 C 1.50704 * 109.47069 * 270.00164 * 12 11 9 14 14 H 1.08002 * 119.99987 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99570 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00489 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99692 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47040 * 60.00203 * 17 15 13 19 19 H 1.48497 * 109.46893 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47044 * 299.99978 * 17 15 13 21 21 C 1.46504 * 120.00113 * 180.02562 * 11 9 8 22 22 C 1.50703 * 109.46750 * 270.00384 * 21 11 9 23 23 C 1.38223 * 119.62264 * 95.02018 * 22 21 11 24 24 C 1.38628 * 119.16031 * 179.97438 * 23 22 21 25 25 C 1.38672 * 118.42475 * 359.97438 * 24 23 22 26 26 C 1.38186 * 119.15778 * 0.02562 * 25 24 23 27 27 N 1.31856 * 119.61279 * 274.99490 * 22 21 11 28 28 N 1.31781 * 119.12406 * 180.28909 * 2 1 3 29 29 H 1.09005 * 109.46650 * 89.99984 * 1 2 3 30 30 H 1.08999 * 109.47401 * 209.99976 * 1 2 3 31 31 H 1.08997 * 109.47344 * 330.00639 * 1 2 3 32 32 H 1.07999 * 120.44089 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.79833 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47101 * 5.00569 * 7 6 5 35 35 H 1.08994 * 109.47529 * 245.00419 * 7 6 5 36 36 H 1.08998 * 109.46856 * 59.99897 * 8 7 6 37 37 H 1.09002 * 109.47033 * 300.00385 * 8 7 6 38 38 H 1.08998 * 109.46706 * 29.99693 * 12 11 9 39 39 H 1.08994 * 109.47447 * 149.99761 * 12 11 9 40 40 H 0.96996 * 120.00180 * 179.97438 * 16 15 13 41 41 H 1.08989 * 109.47587 * 150.00049 * 21 11 9 42 42 H 1.08996 * 109.46786 * 29.99457 * 21 11 9 43 43 H 1.07995 * 120.41821 * 359.95030 * 23 22 21 44 44 H 1.08006 * 120.78822 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.42192 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.60956 * 180.27218 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1516 0.0000 4 6 3.4712 1.1907 -0.0005 5 6 4.1809 0.0000 -0.0016 6 6 3.4713 -1.1904 -0.0015 7 6 4.1961 -2.5115 -0.0021 8 6 3.7165 -3.3569 1.1796 9 6 4.4409 -4.6783 1.1786 10 8 5.2605 -4.9201 0.3180 11 7 4.1780 -5.5916 2.1343 12 6 3.1876 -5.2999 3.1737 13 6 3.8684 -4.6405 4.3454 14 1 4.9324 -4.4573 4.3187 15 6 3.1328 -4.2709 5.4514 16 7 1.8370 -4.4935 5.4838 17 14 3.9765 -3.4528 6.9035 18 1 4.6136 -2.1879 6.4574 19 1 2.9726 -3.1573 7.9570 20 1 5.0140 -4.3636 7.4505 21 6 4.8826 -6.8761 2.1338 22 6 4.1038 -7.8758 1.3183 23 6 4.4257 -8.0715 -0.0116 24 6 3.7034 -8.9939 -0.7527 25 6 2.6801 -9.6886 -0.1256 26 6 2.4159 -9.4396 1.2077 27 7 3.1236 -8.5541 1.8819 28 7 2.1484 -1.1512 -0.0058 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 3.9906 2.1375 -0.0001 33 1 5.2609 0.0000 -0.0024 34 1 5.2685 -2.3377 0.0872 35 1 3.9899 -3.0388 -0.9335 36 1 2.6442 -3.5307 1.0903 37 1 3.9228 -2.8296 2.1110 38 1 2.4261 -4.6312 2.7725 39 1 2.7199 -6.2285 3.5008 40 1 1.3196 -4.2338 6.2620 41 1 4.9788 -7.2382 3.1573 42 1 5.8739 -6.7464 1.6996 43 1 5.2294 -7.5126 -0.4677 44 1 3.9328 -9.1680 -1.7937 45 1 2.0966 -10.4143 -0.6724 46 1 1.6235 -9.9796 1.7046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339929757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:18 Heat of formation + Delta-G solvation = 20.618944 kcal Electronic energy + Delta-G solvation = -28833.849667 eV Core-core repulsion = 24915.550089 eV Total energy + Delta-G solvation = -3918.299578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07211 -41.35479 -40.40901 -36.90264 -36.08612 -34.71674 -34.35012 -33.39984 -33.08508 -32.15630 -29.50966 -29.36783 -28.13001 -26.28952 -24.92221 -24.31773 -24.08604 -23.17703 -22.44920 -19.97368 -18.72061 -18.57741 -18.17504 -17.70262 -17.14580 -17.11638 -16.79585 -16.62395 -16.34585 -16.26085 -16.05763 -15.92135 -15.06266 -14.76656 -14.46179 -14.24713 -14.18721 -14.04568 -13.86905 -13.60586 -13.55358 -13.45978 -13.23949 -13.03420 -13.01629 -12.74077 -12.61797 -12.53816 -12.25281 -12.05174 -11.80398 -11.75090 -11.52263 -10.87018 -10.77737 -10.59714 -10.36861 -10.31872 -10.20562 -9.93696 -9.49574 -8.20157 -6.35377 -0.07469 0.10759 0.15093 0.40818 1.40173 1.41351 1.49065 1.71512 2.23161 2.41908 2.74293 2.95406 3.00551 3.10062 3.16500 3.38690 3.49947 3.79316 3.86024 4.02581 4.06576 4.13339 4.15543 4.22064 4.25524 4.27472 4.47993 4.50731 4.59830 4.60945 4.68229 4.69164 4.78569 4.82567 4.88306 4.90881 5.00764 5.06971 5.11130 5.22744 5.25643 5.28423 5.50812 5.61403 5.77746 5.83552 6.04729 6.08283 6.53698 6.78983 7.13710 7.14031 7.25281 7.38130 8.85851 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.004019 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.137878 B = 6965.474937 C = 9313.401326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.299 3.701 3 N -0.542 5.542 4 C 0.149 3.851 5 C -0.228 4.228 6 C 0.167 3.833 7 C -0.042 4.042 8 C -0.113 4.113 9 C 0.518 3.482 10 O -0.578 6.578 11 N -0.590 5.590 12 C 0.261 3.739 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.020 3.980 16 N -0.921 5.921 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.168 3.832 22 C 0.094 3.906 23 C -0.160 4.160 24 C -0.079 4.079 25 C -0.164 4.164 26 C 0.078 3.922 27 N -0.507 5.507 28 N -0.543 5.543 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.207 0.793 33 H 0.178 0.822 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.167 0.833 45 H 0.172 0.828 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 1.632 -13.962 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 N -0.258 5.258 4 C -0.016 4.016 5 C -0.249 4.249 6 C 0.022 3.978 7 C -0.080 4.080 8 C -0.153 4.153 9 C 0.308 3.692 10 O -0.460 6.460 11 N -0.319 5.319 12 C 0.140 3.860 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.181 4.181 16 N -0.560 5.560 17 Si 0.782 3.218 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.044 3.956 22 C -0.044 4.044 23 C -0.180 4.180 24 C -0.105 4.105 25 C -0.184 4.184 26 C -0.079 4.079 27 N -0.217 5.217 28 N -0.259 5.259 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.224 0.776 33 H 0.196 0.804 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.156 0.844 44 H 0.184 0.816 45 H 0.189 0.811 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.425 1.672 -13.382 13.561 hybrid contribution 1.089 0.088 0.475 1.191 sum 2.514 1.760 -12.908 13.267 Atomic orbital electron populations 1.20635 0.84298 1.04471 1.04726 1.23776 0.99436 0.83330 0.90219 1.68316 1.11411 1.30179 1.15858 1.23893 0.89190 1.00055 0.88511 1.23097 1.04490 0.93209 1.04119 1.21913 0.89609 0.96752 0.89546 1.20278 0.99730 0.89572 0.98445 1.21335 1.00804 0.92976 1.00221 1.20717 0.82235 0.86066 0.80229 1.90541 1.36615 1.80465 1.38418 1.48127 1.41265 1.14624 1.27896 1.18972 0.86488 0.95741 0.84759 1.21644 0.94946 1.40150 1.01663 0.92423 1.25699 0.95286 0.96158 1.00934 1.70036 1.07061 1.47776 1.31081 0.85623 0.78306 0.79116 0.78759 1.19465 1.20802 1.19459 1.20151 0.94384 0.81271 0.99787 1.21647 0.94051 0.95446 0.93285 1.22170 1.02047 0.99522 0.94274 1.21993 0.93737 0.93344 1.01391 1.22518 0.98748 1.01395 0.95743 1.23265 0.97721 0.93962 0.92963 1.67494 1.06002 1.07006 1.41233 1.68079 1.10666 1.31492 1.15700 0.88156 0.90137 0.88638 0.77635 0.80427 0.87751 0.89286 0.89899 0.89680 0.96362 0.96351 0.92447 0.90250 0.88390 0.84446 0.81593 0.81093 0.81026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.32 71.24 0.74 -1.16 16 2 C 0.30 8.82 7.64 138.75 1.06 9.88 16 3 N -0.54 -14.69 10.34 -187.83 -1.94 -16.63 16 4 C 0.15 3.22 11.31 84.71 0.96 4.17 16 5 C -0.23 -5.18 9.80 22.44 0.22 -4.96 16 6 C 0.17 4.94 6.20 42.56 0.26 5.20 16 7 C -0.04 -1.27 4.94 29.85 0.15 -1.13 16 8 C -0.11 -4.28 4.12 29.85 0.12 -4.16 16 9 C 0.52 21.25 7.67 87.66 0.67 21.92 16 10 O -0.58 -23.52 15.52 -3.03 -0.05 -23.56 16 11 N -0.59 -25.81 2.44 -830.51 -2.03 -27.84 16 12 C 0.26 13.34 4.97 85.63 0.43 13.77 16 13 C -0.55 -29.33 9.28 25.60 0.24 -29.09 16 14 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.02 1.06 5.46 84.65 0.46 1.53 16 16 N -0.92 -53.11 13.29 21.45 0.28 -52.83 16 17 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.17 6.62 5.72 85.63 0.49 7.11 16 22 C 0.09 3.42 6.36 42.55 0.27 3.69 16 23 C -0.16 -4.85 9.72 22.36 0.22 -4.63 16 24 C -0.08 -1.83 10.18 22.47 0.23 -1.60 16 25 C -0.16 -3.62 10.11 22.36 0.23 -3.39 16 26 C 0.08 2.23 11.18 84.67 0.95 3.18 16 27 N -0.51 -19.01 10.27 -183.88 -1.89 -20.90 16 28 N -0.54 -17.87 9.94 -176.02 -1.75 -19.62 16 29 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.18 2.80 8.01 -2.91 -0.02 2.78 16 34 H 0.10 2.80 7.90 -2.38 -0.02 2.78 16 35 H 0.09 2.71 8.10 -2.39 -0.02 2.69 16 36 H 0.08 3.40 7.24 -2.39 -0.02 3.38 16 37 H 0.08 3.51 8.00 -2.39 -0.02 3.49 16 38 H 0.02 1.00 6.44 -2.39 -0.02 0.98 16 39 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 40 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.08 3.30 8.07 -2.39 -0.02 3.28 16 42 H 0.10 3.57 7.32 -2.39 -0.02 3.55 16 43 H 0.14 4.09 8.01 -2.91 -0.02 4.06 16 44 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 45 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 46 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -71.43 397.58 3.32 -68.10 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.98 Total: 28.03 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 7.68 Total: 20.32 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -7.32 Total: -137.82 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.43 3.32 -68.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339929757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.721 kcal (2) G-P(sol) polarization free energy of solvation -71.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds