Wall clock time and date at job start Tue Mar 31 2020 23:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31791 * 119.08200 * 2 1 4 4 C 1.32556 * 121.00613 * 180.02562 * 3 2 1 5 5 C 1.38108 * 119.20335 * 359.97438 * 4 3 2 6 6 C 1.39626 * 118.33308 * 359.97438 * 5 4 3 7 7 N 1.38537 * 120.53103 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47262 * 179.97438 * 8 7 6 10 10 C 1.38382 * 119.92673 * 269.97249 * 9 8 7 11 11 C 1.38339 * 120.29486 * 180.02562 * 10 9 8 12 12 C 1.37981 * 120.14356 * 359.73941 * 11 10 9 13 13 C 1.39556 * 119.85074 * 0.53781 * 12 11 10 14 14 C 1.47846 * 120.14398 * 179.74157 * 13 12 11 15 15 O 1.21554 * 120.00284 * 179.72298 * 14 13 12 16 16 N 1.34781 * 119.99994 * 359.72118 * 14 13 12 17 17 C 1.46499 * 119.99874 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.47391 * 325.00213 * 17 16 14 19 19 C 1.53000 * 109.46840 * 85.00543 * 17 16 14 20 20 C 1.50699 * 109.47060 * 205.00285 * 17 16 14 21 21 H 1.07999 * 120.00019 * 0.02562 * 20 17 16 22 22 C 1.37877 * 120.00129 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99723 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 119.99900 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47147 * 90.00197 * 24 22 20 26 26 H 1.48499 * 109.46797 * 209.99607 * 24 22 20 27 27 H 1.48500 * 109.47032 * 329.99738 * 24 22 20 28 28 C 1.37940 * 119.93202 * 89.99843 * 9 8 7 29 29 N 1.31749 * 119.08535 * 180.25617 * 2 1 3 30 30 H 1.09000 * 109.47110 * 90.00108 * 1 2 3 31 31 H 1.08998 * 109.47163 * 209.99777 * 1 2 3 32 32 H 1.09003 * 109.47328 * 329.99977 * 1 2 3 33 33 H 1.08006 * 120.39218 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.83381 * 179.97438 * 5 4 3 35 35 H 0.97001 * 119.99902 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47286 * 59.99311 * 8 7 6 37 37 H 1.09006 * 109.46971 * 299.99328 * 8 7 6 38 38 H 1.07998 * 119.85551 * 0.02849 * 10 9 8 39 39 H 1.08000 * 119.92829 * 180.02562 * 11 10 9 40 40 H 1.08002 * 120.07289 * 180.25312 * 12 11 10 41 41 H 0.97002 * 119.99716 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.47194 * 299.99493 * 19 17 16 43 43 H 1.08992 * 109.47399 * 59.99666 * 19 17 16 44 44 H 1.09004 * 109.46724 * 180.02562 * 19 17 16 45 45 H 0.97003 * 119.99231 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.07116 * 0.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1475 1.1518 0.0000 4 6 3.4723 1.1963 -0.0005 5 6 4.1863 0.0140 -0.0005 6 6 3.4768 -1.1885 0.0006 7 7 4.1469 -2.4010 0.0001 8 6 5.6117 -2.4285 -0.0010 9 6 6.0873 -3.8584 -0.0007 10 6 6.3067 -4.5127 1.1987 11 6 6.7439 -5.8252 1.2079 12 6 6.9589 -6.4922 0.0193 13 6 6.7452 -5.8363 -1.1938 14 6 6.9791 -6.5430 -2.4712 15 8 6.7873 -5.9708 -3.5264 16 7 7.4050 -7.8217 -2.4657 17 6 7.6362 -8.5222 -3.7315 18 1 6.9039 -8.1923 -4.4684 19 6 9.0457 -8.2089 -4.2376 20 6 7.4983 -10.0073 -3.5163 21 1 7.2616 -10.3910 -2.5349 22 6 7.6742 -10.8762 -4.5722 23 7 7.9619 -10.4089 -5.7674 24 14 7.5039 -12.7172 -4.3052 25 1 6.0930 -13.1217 -4.5306 26 1 8.3841 -13.4391 -5.2587 27 1 7.8994 -13.0543 -2.9140 28 6 6.3036 -4.5121 -1.1960 29 7 2.1474 -1.1513 -0.0051 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 3.9872 2.1457 -0.0001 34 1 5.2663 0.0196 -0.0013 35 1 3.6463 -3.2319 0.0005 36 1 5.9853 -1.9214 0.8886 37 1 5.9839 -1.9216 -0.8914 38 1 6.1358 -3.9966 2.1319 39 1 6.9128 -6.3303 2.1474 40 1 7.2963 -7.5182 0.0278 41 1 7.5577 -8.2784 -1.6237 42 1 9.1455 -7.1347 -4.3933 43 1 9.7780 -8.5387 -3.5008 44 1 9.2175 -8.7297 -5.1796 45 1 8.0860 -11.0203 -6.5102 46 1 6.1329 -4.0000 -2.1314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348733764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:39 Heat of formation + Delta-G solvation = 34.840784 kcal Electronic energy + Delta-G solvation = -27405.343967 eV Core-core repulsion = 23487.661095 eV Total energy + Delta-G solvation = -3917.682873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16038 -40.03272 -38.37766 -36.71838 -34.89992 -33.69171 -33.13838 -32.39726 -31.21669 -30.79385 -28.78914 -28.58287 -26.34363 -25.31730 -23.99468 -23.94793 -22.50406 -21.69007 -20.96155 -19.49276 -18.58860 -17.62967 -17.50986 -16.43303 -16.06418 -15.65027 -15.56201 -15.46061 -15.24682 -14.98191 -14.76732 -14.39668 -14.25958 -13.93567 -13.73347 -13.41698 -13.37238 -12.94596 -12.77320 -12.63864 -12.54837 -12.42641 -11.83308 -11.69081 -11.42588 -11.22313 -11.13008 -11.02466 -10.93229 -10.80781 -10.36139 -10.28470 -9.99534 -9.42738 -9.25295 -9.12329 -9.11739 -9.02987 -8.60254 -8.45258 -7.99923 -6.17064 -4.26793 0.79629 0.81980 1.09905 1.16420 2.66649 3.21361 3.23034 3.28186 3.29671 3.64568 3.88422 3.90029 4.03491 4.12807 4.28364 4.32554 4.50719 4.60784 4.80214 4.93331 4.95729 5.05381 5.12969 5.15320 5.15570 5.19569 5.24643 5.30961 5.46315 5.51592 5.63873 5.67747 5.80915 6.02911 6.21252 6.23476 6.29231 6.46581 6.68795 6.77767 6.90639 6.96654 7.08690 7.26891 7.36182 7.49011 7.63372 7.85125 8.07683 8.09034 8.55762 8.70951 8.99918 9.40595 10.88919 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.001870 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.988430 B =14966.678099 C =15371.065791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.359 3.641 3 N -0.567 5.567 4 C 0.178 3.822 5 C -0.302 4.302 6 C 0.442 3.558 7 N -0.705 5.705 8 C 0.171 3.829 9 C -0.127 4.127 10 C -0.083 4.083 11 C -0.129 4.129 12 C -0.076 4.076 13 C -0.120 4.120 14 C 0.539 3.461 15 O -0.549 6.549 16 N -0.700 5.700 17 C 0.263 3.737 18 H 0.050 0.950 19 C -0.147 4.147 20 C -0.535 4.535 21 H 0.061 0.939 22 C 0.066 3.934 23 N -0.882 5.882 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.043 4.043 29 N -0.579 5.579 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.411 0.589 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.388 0.612 42 H 0.015 0.985 43 H 0.027 0.973 44 H 0.091 0.909 45 H 0.265 0.735 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 18.409 16.866 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 N -0.287 5.287 4 C 0.016 3.984 5 C -0.330 4.330 6 C 0.198 3.802 7 N -0.337 5.337 8 C 0.048 3.952 9 C -0.128 4.128 10 C -0.102 4.102 11 C -0.147 4.147 12 C -0.095 4.095 13 C -0.123 4.123 14 C 0.325 3.675 15 O -0.429 6.429 16 N -0.347 5.347 17 C 0.162 3.838 18 H 0.068 0.932 19 C -0.206 4.206 20 C -0.574 4.574 21 H 0.079 0.921 22 C -0.137 4.137 23 N -0.519 5.519 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.063 4.063 29 N -0.304 5.304 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.181 0.819 34 H 0.159 0.841 35 H 0.247 0.753 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.222 0.778 42 H 0.034 0.966 43 H 0.046 0.954 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.760 18.715 15.864 25.449 hybrid contribution 0.988 -1.719 0.486 2.041 sum -5.772 16.996 16.350 24.280 Atomic orbital electron populations 1.20560 0.85950 1.03963 1.03874 1.22932 0.97662 0.82599 0.87800 1.68276 1.09991 1.29760 1.20623 1.22870 0.89499 0.97912 0.88077 1.22141 1.02285 0.93007 1.15599 1.18526 0.88317 0.86727 0.86631 1.44662 1.05691 1.05250 1.78116 1.20292 0.78627 0.93650 1.02676 1.19600 1.04187 0.95462 0.93503 1.21175 0.97056 0.94722 0.97228 1.21092 1.00672 0.94742 0.98167 1.21528 0.96280 0.99968 0.91738 1.20362 1.02596 0.95198 0.94160 1.18213 0.78497 0.82794 0.88037 1.90737 1.53087 1.66831 1.32285 1.46511 1.64790 1.11517 1.11922 1.18805 0.94209 0.90572 0.80220 0.93198 1.22078 0.97917 0.97511 1.03056 1.21186 1.49921 0.90236 0.96017 0.92067 1.24897 0.94588 0.99315 0.94928 1.69904 1.46834 1.35027 1.00180 0.86426 0.78112 0.84369 0.78059 1.20524 1.21030 1.19846 1.21208 0.93807 0.93192 0.98045 1.67773 1.07615 1.31458 1.23582 0.89621 0.89780 0.89635 0.81859 0.84086 0.75268 0.90534 0.90383 0.85717 0.85256 0.85057 0.77843 0.96593 0.95400 0.89014 0.92506 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.32 36.00 0.37 -0.28 16 2 C 0.36 3.97 7.64 -157.24 -1.20 2.77 16 3 N -0.57 -6.21 10.33 -10.81 -0.11 -6.32 16 4 C 0.18 1.59 11.29 -17.29 -0.20 1.39 16 5 C -0.30 -2.69 9.40 -39.11 -0.37 -3.06 16 6 C 0.44 4.76 7.71 -154.78 -1.19 3.56 16 7 N -0.71 -6.64 5.70 -61.45 -0.35 -6.99 16 8 C 0.17 1.35 5.05 -5.20 -0.03 1.32 16 9 C -0.13 -1.24 5.24 -104.68 -0.55 -1.79 16 10 C -0.08 -0.72 9.69 -39.49 -0.38 -1.11 16 11 C -0.13 -1.21 10.03 -39.64 -0.40 -1.61 16 12 C -0.08 -0.91 9.54 -39.18 -0.37 -1.29 16 13 C -0.12 -1.80 5.87 -104.97 -0.62 -2.42 16 14 C 0.54 10.80 7.74 -12.33 -0.10 10.71 16 15 O -0.55 -13.13 16.01 5.32 0.09 -13.05 16 16 N -0.70 -14.41 5.02 -55.88 -0.28 -14.69 16 17 C 0.26 6.64 2.56 -69.08 -0.18 6.47 16 18 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 19 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 20 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 23 N -0.88 -24.61 11.32 55.43 0.63 -23.98 16 24 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C -0.04 -0.56 9.24 -39.19 -0.36 -0.93 16 29 N -0.58 -6.96 10.37 -9.97 -0.10 -7.07 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.14 0.91 6.87 -52.49 -0.36 0.55 16 35 H 0.41 4.07 8.59 -40.82 -0.35 3.72 16 36 H 0.08 0.47 7.92 -51.93 -0.41 0.06 16 37 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.13 1.43 6.41 -52.49 -0.34 1.10 16 41 H 0.39 6.80 6.57 -40.82 -0.27 6.53 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 45 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.14 1.92 7.65 -52.49 -0.40 1.52 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -32.91 390.72 -11.05 -43.96 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.17 Total: 9.04 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -5.62 Total: -2.15 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.22 Total: -59.05 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.91 -11.05 -43.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348733764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.802 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds